Wall clock time and date at job start Wed Apr 1 2020 03:11:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09006 * 109.46749 * 2 1 4 4 C 1.53000 * 109.47030 * 119.99362 * 2 1 3 5 5 N 1.46902 * 109.46995 * 175.00023 * 4 2 1 6 6 C 1.46897 * 110.99896 * 180.02562 * 5 4 2 7 7 C 1.50701 * 109.47168 * 180.02562 * 6 5 4 8 8 C 1.38299 * 119.93217 * 269.73195 * 7 6 5 9 9 C 1.38093 * 120.06953 * 179.72477 * 8 7 6 10 10 C 1.38883 * 119.92808 * 0.56550 * 9 8 7 11 11 O 1.35754 * 120.06438 * 179.68623 * 10 9 8 12 12 C 1.34826 * 116.99724 * 174.49160 * 11 10 9 13 13 H 1.07998 * 120.00100 * 5.04739 * 12 11 10 14 14 C 1.38654 * 119.99970 * 185.05457 * 12 11 10 15 15 N 1.31557 * 120.00012 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 119.99959 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47303 * 60.00249 * 16 14 12 18 18 H 1.48499 * 109.46956 * 179.97438 * 16 14 12 19 19 H 1.48498 * 109.47359 * 299.99968 * 16 14 12 20 20 C 1.38871 * 119.86468 * 359.70509 * 10 9 8 21 21 C 1.38101 * 119.93230 * 0.02562 * 20 10 9 22 22 N 1.46496 * 109.47344 * 239.99920 * 2 1 3 23 23 C 1.34779 * 120.00026 * 85.00082 * 22 2 1 24 24 O 1.21697 * 119.99812 * 359.97438 * 23 22 2 25 25 C 1.46652 * 120.00032 * 179.97438 * 23 22 2 26 26 C 1.36549 * 125.98879 * 179.71027 * 25 23 22 27 27 C 1.40367 * 106.70659 * 179.85016 * 26 25 23 28 28 C 1.35128 * 107.11303 * 0.41423 * 27 26 25 29 29 O 1.33926 * 108.77272 * 359.74418 * 28 27 26 30 30 H 1.09006 * 109.46749 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47942 * 300.00119 * 1 2 3 32 32 H 1.09006 * 109.47149 * 60.00553 * 1 2 3 33 33 H 1.09004 * 109.46650 * 55.00374 * 4 2 1 34 34 H 1.09000 * 109.47310 * 295.00851 * 4 2 1 35 35 H 1.00895 * 111.00199 * 303.96329 * 5 4 2 36 36 H 1.09002 * 109.46852 * 60.00232 * 6 5 4 37 37 H 1.09001 * 109.47162 * 300.00674 * 6 5 4 38 38 H 1.08005 * 119.96050 * 359.97425 * 8 7 6 39 39 H 1.07999 * 120.03730 * 180.26989 * 9 8 7 40 40 H 0.97002 * 120.00021 * 179.97438 * 15 14 12 41 41 H 1.08002 * 120.03853 * 179.97438 * 20 10 9 42 42 H 1.07997 * 119.96732 * 179.97438 * 21 20 10 43 43 H 0.96994 * 120.00085 * 264.99352 * 22 2 1 44 44 H 1.07998 * 126.64403 * 359.96895 * 26 25 23 45 45 H 1.08000 * 126.43697 * 180.15592 * 27 26 25 46 46 H 1.08001 * 125.61098 * 179.70541 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 7 3.5040 -0.8265 1.1905 6 6 4.0303 -1.5156 2.3763 7 6 5.5316 -1.6041 2.2809 8 6 6.1213 -2.6984 1.6748 9 6 7.4966 -2.7797 1.5808 10 6 8.2881 -1.7666 2.1062 11 8 9.6406 -1.8468 2.0209 12 6 10.3451 -0.7792 2.4473 13 1 9.8364 0.0539 2.9096 14 6 11.7226 -0.7507 2.2923 15 7 12.3423 -1.7656 1.7295 16 14 12.6986 0.7288 2.8824 17 1 12.4984 0.9031 4.3435 18 1 14.1411 0.5135 2.6031 19 1 12.2322 1.9456 2.1702 20 6 7.6932 -0.6717 2.7192 21 6 6.3171 -0.5936 2.8051 22 7 2.0184 -0.6906 -1.1961 23 6 2.1471 -0.0182 -2.3571 24 8 1.8572 1.1624 -2.4119 25 6 2.6366 -0.7094 -3.5543 26 6 2.8081 -0.1519 -4.7890 27 6 3.2940 -1.1681 -5.6266 28 6 3.3876 -2.2894 -4.8784 29 8 2.9906 -2.0091 -3.6304 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3635 0.5138 0.8899 32 1 -0.3634 0.5138 -0.8901 33 1 1.6053 -1.7197 1.2952 34 1 1.7515 -0.1582 2.1370 35 1 3.7996 -1.2881 0.3434 36 1 3.6094 -2.5197 2.4296 37 1 3.7556 -0.9586 3.2720 38 1 5.5053 -3.4884 1.2710 39 1 7.9564 -3.6324 1.1035 40 1 13.3060 -1.7455 1.6207 41 1 8.3060 0.1175 3.1291 42 1 5.8538 0.2575 3.2821 43 1 2.2492 -1.6317 -1.1525 44 1 2.6103 0.8729 -5.0666 45 1 3.5419 -1.0726 -6.6734 46 1 3.7262 -3.2530 -5.2292 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001406444127.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:11:56 Heat of formation + Delta-G solvation = -44.870047 kcal Electronic energy + Delta-G solvation = -28594.689586 eV Core-core repulsion = 24450.801389 eV Total energy + Delta-G solvation = -4143.888196 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.63493 -40.86354 -40.70118 -38.77929 -37.71958 -35.45096 -34.27465 -34.04317 -32.68457 -31.78249 -30.99305 -30.34459 -27.71219 -26.74220 -24.95029 -24.30152 -23.60478 -22.75498 -22.08736 -21.78130 -21.41474 -19.83376 -19.66016 -18.81979 -17.58904 -17.40658 -17.19122 -16.82638 -16.43504 -16.15948 -16.03551 -15.73544 -15.59978 -15.44455 -15.26599 -14.89666 -14.62504 -14.33080 -14.21501 -13.97680 -13.94907 -13.63512 -13.58254 -13.47611 -13.21187 -13.01952 -12.84495 -12.75906 -12.36915 -12.36385 -12.15274 -12.10524 -11.78022 -11.43528 -11.17276 -11.05722 -10.79186 -10.31760 -9.76408 -9.64819 -9.32702 -8.89415 -8.47737 -6.15739 0.02532 0.61683 0.68908 1.34031 1.42077 1.44626 1.50062 1.66230 2.09496 2.17406 2.20474 2.77986 3.08998 3.40703 3.53159 3.72452 3.88839 3.94723 4.04851 4.08889 4.12360 4.19654 4.24830 4.33402 4.51956 4.61078 4.61674 4.66987 4.72873 4.77120 4.79537 4.86121 4.87941 4.94708 5.04751 5.10732 5.16265 5.26914 5.31701 5.36564 5.41324 5.57586 5.73007 5.82131 5.82898 6.02877 6.08983 6.26372 6.37853 6.43313 6.97174 6.98727 7.78170 8.75349 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.010180 B = 0.002338 C = 0.002091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2749.730204 B =11972.578971 C =13389.432300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.143 3.857 3 H 0.073 0.927 4 C 0.058 3.942 5 N -0.700 5.700 6 C 0.123 3.877 7 C -0.159 4.159 8 C -0.059 4.059 9 C -0.205 4.205 10 C 0.113 3.887 11 O -0.233 6.233 12 C -0.415 4.415 13 H 0.099 0.901 14 C -0.022 4.022 15 N -0.921 5.921 16 Si 1.017 2.983 17 H -0.257 1.257 18 H -0.270 1.270 19 H -0.259 1.259 20 C -0.247 4.247 21 C -0.052 4.052 22 N -0.701 5.701 23 C 0.604 3.396 24 O -0.560 6.560 25 C -0.110 4.110 26 C -0.131 4.131 27 C -0.237 4.237 28 C 0.009 3.991 29 O -0.169 6.169 30 H 0.072 0.928 31 H 0.086 0.914 32 H 0.044 0.956 33 H 0.058 0.942 34 H 0.101 0.899 35 H 0.339 0.661 36 H 0.055 0.945 37 H 0.086 0.914 38 H 0.150 0.850 39 H 0.113 0.887 40 H 0.273 0.727 41 H 0.114 0.886 42 H 0.134 0.866 43 H 0.411 0.589 44 H 0.157 0.843 45 H 0.181 0.819 46 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.644 -1.826 -7.903 26.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.039 3.961 3 H 0.091 0.909 4 C -0.071 4.071 5 N -0.332 5.332 6 C -0.005 4.005 7 C -0.161 4.161 8 C -0.077 4.077 9 C -0.225 4.225 10 C 0.062 3.938 11 O -0.139 6.139 12 C -0.491 4.491 13 H 0.117 0.883 14 C -0.219 4.219 15 N -0.559 5.559 16 Si 0.836 3.164 17 H -0.181 1.181 18 H -0.194 1.194 19 H -0.184 1.184 20 C -0.266 4.266 21 C -0.070 4.070 22 N -0.352 5.352 23 C 0.391 3.609 24 O -0.441 6.441 25 C -0.162 4.162 26 C -0.152 4.152 27 C -0.256 4.256 28 C -0.061 4.061 29 O -0.064 6.064 30 H 0.091 0.909 31 H 0.105 0.895 32 H 0.063 0.937 33 H 0.076 0.924 34 H 0.119 0.881 35 H 0.157 0.843 36 H 0.073 0.927 37 H 0.104 0.896 38 H 0.167 0.833 39 H 0.131 0.869 40 H 0.082 0.918 41 H 0.132 0.868 42 H 0.152 0.848 43 H 0.248 0.752 44 H 0.174 0.826 45 H 0.198 0.802 46 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges -25.444 -0.805 -7.487 26.534 hybrid contribution 1.031 -0.519 -0.366 1.211 sum -24.413 -1.324 -7.853 25.679 Atomic orbital electron populations 1.22096 0.93284 1.03177 1.02838 1.21151 0.94784 0.97215 0.82924 0.90910 1.22302 0.87104 1.00342 0.97396 1.60434 1.10040 1.57746 1.05010 1.20632 0.88491 0.97597 0.93735 1.19673 0.96087 0.95615 1.04675 1.20912 0.92159 0.97934 0.96713 1.20454 0.94274 0.99774 1.07956 1.19970 0.84214 0.95255 0.94321 1.83934 1.13911 1.40746 1.75354 1.21761 0.90118 0.97039 1.40153 0.88348 1.26561 0.96659 1.02005 0.96703 1.70172 1.10218 1.32571 1.42931 0.84680 0.76713 0.75814 0.79226 1.18095 1.19446 1.18380 1.21261 0.96595 1.00329 1.08421 1.20925 0.91416 0.97977 0.96711 1.45867 1.65906 1.14432 1.09000 1.16681 0.77023 0.85304 0.81889 1.90851 1.52678 1.15836 1.84730 1.21958 1.13290 0.83661 0.97264 1.22261 0.99376 1.01797 0.91758 1.22222 1.07849 0.92418 1.03089 1.25346 0.98307 1.02358 0.80066 1.84046 1.64018 1.25587 1.32766 0.90888 0.89527 0.93719 0.92432 0.88080 0.84261 0.92718 0.89613 0.83267 0.86919 0.91813 0.86788 0.84817 0.75225 0.82569 0.80197 0.73163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.02 9.48 71.98 0.68 -1.34 16 2 C 0.14 2.37 2.88 44.99 0.13 2.50 16 3 H 0.07 1.65 7.58 -2.38 -0.02 1.63 16 4 C 0.06 0.77 5.30 86.30 0.46 1.23 16 5 N -0.70 -13.67 6.48 -517.92 -3.36 -17.03 16 6 C 0.12 2.48 5.81 85.56 0.50 2.98 16 7 C -0.16 -4.73 5.40 -19.83 -0.11 -4.84 16 8 C -0.06 -1.86 9.69 22.25 0.22 -1.65 16 9 C -0.21 -8.64 9.99 22.39 0.22 -8.42 16 10 C 0.11 5.68 6.65 22.58 0.15 5.83 16 11 O -0.23 -14.23 9.76 -22.74 -0.22 -14.46 16 12 C -0.41 -24.63 9.49 67.92 0.64 -23.99 16 13 H 0.10 5.41 5.20 -2.91 -0.02 5.39 16 14 C -0.02 -1.26 5.49 84.83 0.47 -0.79 16 15 N -0.92 -57.13 13.67 21.61 0.30 -56.83 16 16 Si 1.02 43.61 29.55 68.60 2.03 45.64 16 17 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 18 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 19 H -0.26 -10.55 7.11 99.48 0.71 -9.85 16 20 C -0.25 -11.01 9.17 22.39 0.21 -10.80 16 21 C -0.05 -1.81 9.69 22.25 0.22 -1.60 16 22 N -0.70 -12.60 4.35 -446.52 -1.94 -14.54 16 23 C 0.60 14.74 7.75 86.44 0.67 15.41 16 24 O -0.56 -17.50 16.53 -4.34 -0.07 -17.57 16 25 C -0.11 -2.43 7.13 24.07 0.17 -2.26 16 26 C -0.13 -2.68 10.62 22.39 0.24 -2.44 16 27 C -0.24 -3.42 10.87 22.07 0.24 -3.18 16 28 C 0.01 0.11 12.08 67.10 0.81 0.92 16 29 O -0.17 -3.00 10.40 -5.04 -0.05 -3.05 16 30 H 0.07 0.73 8.14 -2.38 -0.02 0.71 16 31 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.04 0.77 8.14 -2.38 -0.02 0.75 16 33 H 0.06 0.55 8.14 -2.38 -0.02 0.53 16 34 H 0.10 1.17 8.14 -2.39 -0.02 1.16 16 35 H 0.34 6.88 7.57 -89.70 -0.68 6.20 16 36 H 0.05 0.88 8.08 -2.39 -0.02 0.86 16 37 H 0.09 1.58 8.08 -2.39 -0.02 1.56 16 38 H 0.15 3.47 8.06 -2.91 -0.02 3.45 16 39 H 0.11 4.69 8.06 -2.91 -0.02 4.66 16 40 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 41 H 0.11 5.24 5.64 -2.91 -0.02 5.22 16 42 H 0.13 3.96 8.06 -2.91 -0.02 3.94 16 43 H 0.41 5.73 7.91 -92.71 -0.73 4.99 16 44 H 0.16 3.13 8.06 -2.91 -0.02 3.11 16 45 H 0.18 1.60 8.06 -2.91 -0.02 1.57 16 46 H 0.25 0.68 8.06 -2.91 -0.02 0.66 16 Total: -1.00 -80.33 396.99 2.20 -78.13 By element: Atomic # 1 Polarization: 32.53 SS G_CDS: -0.39 Total: 32.14 kcal Atomic # 6 Polarization: -38.34 SS G_CDS: 5.91 Total: -32.43 kcal Atomic # 7 Polarization: -83.39 SS G_CDS: -5.00 Total: -88.40 kcal Atomic # 8 Polarization: -34.73 SS G_CDS: -0.35 Total: -35.08 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.64 kcal Total: -80.33 2.20 -78.13 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001406444127.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.257 kcal (2) G-P(sol) polarization free energy of solvation -80.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds