Wall clock time and date at job start Wed Apr 1 2020 03:03:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08993 * 109.47070 * 2 1 4 4 N 1.46499 * 109.47095 * 239.99386 * 2 1 3 5 5 C 1.36940 * 119.99752 * 85.00880 * 4 2 1 6 6 H 1.08003 * 119.99772 * 359.97438 * 5 4 2 7 7 C 1.38806 * 120.00133 * 179.97438 * 5 4 2 8 8 N 1.31626 * 119.99931 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00211 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.46942 * 359.97438 * 9 7 5 11 11 H 1.48494 * 109.47535 * 119.99946 * 9 7 5 12 12 H 1.48505 * 109.46783 * 239.99706 * 9 7 5 13 13 C 1.53007 * 109.46693 * 120.00026 * 2 1 3 14 14 H 1.09000 * 109.55389 * 175.12747 * 13 2 1 15 15 C 1.53719 * 109.44069 * 295.38818 * 13 2 1 16 16 N 1.47150 * 108.16101 * 172.37494 * 15 13 2 17 17 C 1.34776 * 120.98185 * 129.42979 * 16 15 13 18 18 O 1.21659 * 120.00062 * 2.95938 * 17 16 15 19 19 C 1.46983 * 120.00006 * 182.96169 * 17 16 15 20 20 C 1.35810 * 125.12944 * 172.86151 * 19 17 16 21 21 C 1.46243 * 106.07527 * 180.22551 * 20 19 17 22 22 C 1.39712 * 134.18904 * 180.56326 * 21 20 19 23 23 C 1.36618 * 119.71364 * 179.54478 * 22 21 20 24 24 C 1.38838 * 120.44297 * 359.64512 * 23 22 21 25 25 C 1.37804 * 120.74595 * 0.04771 * 24 23 22 26 26 C 1.39026 * 119.85063 * 359.97438 * 25 24 23 27 27 O 1.34718 * 133.24042 * 180.02562 * 26 25 24 28 28 C 1.47151 * 118.03650 * 309.16016 * 16 15 13 29 29 C 1.53290 * 108.38715 * 50.78161 * 28 16 15 30 30 O 1.42959 * 109.22591 * 307.70188 * 29 28 16 31 31 H 1.09000 * 109.47460 * 300.00549 * 1 2 3 32 32 H 1.09008 * 109.46788 * 60.00502 * 1 2 3 33 33 H 1.09001 * 109.47829 * 179.97438 * 1 2 3 34 34 H 0.96997 * 120.00629 * 265.00127 * 4 2 1 35 35 H 0.96999 * 119.99939 * 179.97438 * 8 7 5 36 36 H 1.09000 * 109.83956 * 52.69453 * 15 13 2 37 37 H 1.09004 * 109.74488 * 291.99989 * 15 13 2 38 38 H 1.07994 * 126.95866 * 359.96707 * 20 19 17 39 39 H 1.07997 * 120.13842 * 359.18896 * 22 21 20 40 40 H 1.07994 * 119.77886 * 179.67339 * 23 22 21 41 41 H 1.07997 * 119.63188 * 180.02562 * 24 23 22 42 42 H 1.08000 * 120.07441 * 179.97438 * 25 24 23 43 43 H 1.09002 * 109.68482 * 170.51016 * 28 16 15 44 44 H 1.09001 * 109.67888 * 291.05877 * 28 16 15 45 45 H 1.09006 * 109.51073 * 67.62428 * 29 28 16 46 46 H 1.09004 * 109.51680 * 187.72298 * 29 28 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1961 5 6 2.1493 -0.0076 -2.3757 6 1 1.8921 1.0402 -2.4243 7 6 2.6124 -0.6619 -3.5089 8 7 2.9263 -1.9388 -3.4495 9 14 2.7904 0.2698 -5.1182 10 1 2.3745 1.6816 -4.9213 11 1 4.2073 0.2277 -5.5605 12 1 1.9301 -0.3597 -6.1522 13 6 2.0399 -0.7213 1.2493 14 1 3.1264 -0.7983 1.2082 15 6 1.6245 0.0680 2.5012 16 7 1.9644 -0.7372 3.6850 17 6 2.6670 -0.2076 4.7059 18 8 2.9835 0.9669 4.6819 19 6 3.0509 -1.0489 5.8484 20 6 3.8700 -0.6650 6.8614 21 6 3.9710 -1.8153 7.7586 22 6 4.6393 -2.0563 8.9617 23 6 4.5183 -3.2727 9.5717 24 6 3.7303 -4.2671 9.0078 25 6 3.0580 -4.0475 7.8252 26 6 3.1662 -2.8177 7.1858 27 8 2.6417 -2.3190 6.0495 28 6 1.5095 -2.1361 3.7238 29 6 1.9258 -2.8165 2.4148 30 8 1.4703 -2.0311 1.3105 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 -0.3635 -1.0276 -0.0005 34 1 2.2490 -1.6319 -1.1525 35 1 3.2496 -2.3961 -4.2415 36 1 0.5509 0.2557 2.4809 37 1 2.1627 1.0153 2.5347 38 1 4.3526 0.2941 6.9781 39 1 5.2535 -1.2862 9.4044 40 1 5.0386 -3.4619 10.4989 41 1 3.6436 -5.2238 9.5014 42 1 2.4483 -4.8288 7.3960 43 1 1.9715 -2.6492 4.5673 44 1 0.4246 -2.1666 3.8245 45 1 3.0120 -2.9011 2.3779 46 1 1.4813 -3.8104 2.3636 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001506848433.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:03:50 Heat of formation + Delta-G solvation = -12.130243 kcal Electronic energy + Delta-G solvation = -29893.347889 eV Core-core repulsion = 25750.879397 eV Total energy + Delta-G solvation = -4142.468492 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.94932 -40.31607 -38.54581 -38.20099 -35.58453 -34.66801 -33.19895 -32.52676 -30.94411 -30.47721 -29.93447 -28.49241 -27.35976 -25.21147 -24.08615 -23.57186 -23.05916 -22.30093 -21.65448 -20.09370 -19.63727 -18.36231 -17.79187 -17.20720 -16.81401 -16.65039 -16.26502 -15.97248 -15.35483 -15.29496 -15.02447 -14.61493 -14.54992 -14.35897 -14.09093 -13.67171 -13.60052 -13.31335 -13.28426 -12.89208 -12.71982 -12.52770 -12.42664 -12.08243 -11.85296 -11.40402 -11.27997 -11.14266 -10.85504 -10.74194 -10.67907 -10.60521 -10.43050 -10.19178 -9.93114 -9.85755 -9.65785 -9.09746 -8.89691 -8.77268 -8.51050 -6.92887 -5.72991 -3.01843 0.18751 0.91773 1.48080 2.00422 2.65395 2.87128 3.27236 3.45330 3.50991 3.53207 3.88076 3.97075 4.17059 4.47717 4.54349 4.58710 4.66298 4.74145 4.80238 4.88753 5.01785 5.10639 5.12893 5.19412 5.29666 5.37793 5.44022 5.59425 5.63023 5.70812 5.75196 5.80356 5.87298 5.92770 5.94942 5.97875 5.98951 6.11075 6.18028 6.30579 6.45600 6.62232 6.65436 6.81962 7.04289 7.16632 7.45353 7.72353 7.73504 8.45128 9.57100 10.14443 10.51005 11.49480 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.022871 B = 0.002205 C = 0.002156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.942923 B =12695.784612 C =12982.941989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.185 3.815 3 H 0.060 0.940 4 N -0.719 5.719 5 C -0.238 4.238 6 H 0.071 0.929 7 C -0.014 4.014 8 N -0.930 5.930 9 Si 0.906 3.094 10 H -0.280 1.280 11 H -0.292 1.292 12 H -0.292 1.292 13 C 0.076 3.924 14 H 0.065 0.935 15 C 0.082 3.918 16 N -0.599 5.599 17 C 0.596 3.404 18 O -0.515 6.515 19 C -0.021 4.021 20 C -0.112 4.112 21 C -0.142 4.142 22 C -0.060 4.060 23 C -0.139 4.139 24 C -0.085 4.085 25 C -0.110 4.110 26 C 0.060 3.940 27 O -0.176 6.176 28 C 0.055 3.945 29 C 0.048 3.952 30 O -0.357 6.357 31 H 0.035 0.965 32 H 0.053 0.947 33 H 0.057 0.943 34 H 0.389 0.611 35 H 0.254 0.746 36 H 0.087 0.913 37 H 0.103 0.897 38 H 0.171 0.829 39 H 0.131 0.869 40 H 0.131 0.869 41 H 0.137 0.863 42 H 0.136 0.864 43 H 0.117 0.883 44 H 0.082 0.918 45 H 0.054 0.946 46 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.078 -4.605 28.589 28.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.074 3.926 3 H 0.078 0.922 4 N -0.361 5.361 5 C -0.369 4.369 6 H 0.089 0.911 7 C -0.210 4.210 8 N -0.579 5.579 9 Si 0.737 3.263 10 H -0.205 1.205 11 H -0.219 1.219 12 H -0.219 1.219 13 C 0.016 3.984 14 H 0.083 0.917 15 C -0.040 4.040 16 N -0.331 5.331 17 C 0.383 3.617 18 O -0.393 6.393 19 C -0.070 4.070 20 C -0.132 4.132 21 C -0.143 4.143 22 C -0.078 4.078 23 C -0.157 4.157 24 C -0.103 4.103 25 C -0.128 4.128 26 C 0.012 3.988 27 O -0.079 6.079 28 C -0.066 4.066 29 C -0.030 4.030 30 O -0.275 6.275 31 H 0.054 0.946 32 H 0.072 0.928 33 H 0.076 0.924 34 H 0.223 0.777 35 H 0.064 0.936 36 H 0.105 0.895 37 H 0.121 0.879 38 H 0.188 0.812 39 H 0.149 0.851 40 H 0.149 0.851 41 H 0.155 0.845 42 H 0.154 0.846 43 H 0.134 0.866 44 H 0.100 0.900 45 H 0.072 0.928 46 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -0.063 -4.053 28.072 28.363 hybrid contribution 0.390 0.138 -0.623 0.748 sum 0.327 -3.915 27.449 27.729 Atomic orbital electron populations 1.22425 0.98606 1.01675 0.99590 1.20198 0.92866 0.94623 0.84888 0.92190 1.42361 1.77849 1.10976 1.04873 1.19295 1.36418 0.93900 0.87315 0.91078 1.24746 1.02224 0.95984 0.98048 1.69693 1.50846 1.08658 1.28684 0.86129 0.77252 0.78800 0.84083 1.20548 1.21938 1.21928 1.23090 0.97737 0.83037 0.94515 0.91665 1.22735 1.02358 0.95713 0.83171 1.48102 1.53104 1.13323 1.18562 1.16828 0.78582 0.85831 0.80427 1.90890 1.55714 1.14448 1.78252 1.22015 1.02482 0.83491 0.99001 1.22741 0.99024 0.99252 0.92201 1.19930 1.02325 0.94080 0.97981 1.20399 0.97423 0.97474 0.92536 1.20819 1.00601 0.93307 1.01007 1.21038 0.95490 0.99591 0.94146 1.20038 1.03234 0.93584 0.95987 1.20008 0.96211 0.95719 0.86827 1.84217 1.61254 1.25775 1.36689 1.23122 1.01311 0.81173 1.01028 1.22901 0.99569 0.95286 0.85271 1.88108 1.67706 1.25614 1.46050 0.94650 0.92829 0.92400 0.77663 0.93624 0.89506 0.87865 0.81182 0.85134 0.85084 0.84531 0.84628 0.86634 0.90004 0.92811 0.87647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.99 9.06 37.16 0.34 -2.65 16 2 C 0.18 3.70 2.77 -67.93 -0.19 3.51 16 3 H 0.06 1.19 8.08 -51.93 -0.42 0.77 16 4 N -0.72 -18.26 5.10 -53.43 -0.27 -18.54 16 5 C -0.24 -6.64 9.93 -15.06 -0.15 -6.79 16 6 H 0.07 1.92 7.83 -52.48 -0.41 1.51 16 7 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 8 N -0.93 -28.44 13.06 55.49 0.72 -27.71 16 9 Si 0.91 22.59 29.55 -169.99 -5.02 17.56 16 10 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 12 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 13 C 0.08 1.30 2.62 -26.35 -0.07 1.23 16 14 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 15 C 0.08 1.20 5.82 -3.31 -0.02 1.18 16 16 N -0.60 -8.17 3.01 -173.45 -0.52 -8.69 16 17 C 0.60 8.52 7.68 -12.72 -0.10 8.42 16 18 O -0.52 -8.59 16.32 5.23 0.09 -8.51 16 19 C -0.02 -0.26 6.82 -36.91 -0.25 -0.51 16 20 C -0.11 -1.22 10.81 -37.24 -0.40 -1.62 16 21 C -0.14 -1.42 6.38 -105.19 -0.67 -2.09 16 22 C -0.06 -0.45 10.06 -39.62 -0.40 -0.85 16 23 C -0.14 -0.84 9.98 -39.95 -0.40 -1.24 16 24 C -0.08 -0.50 10.01 -39.52 -0.40 -0.90 16 25 C -0.11 -0.83 10.07 -39.45 -0.40 -1.22 16 26 C 0.06 0.60 7.41 -38.35 -0.28 0.32 16 27 O -0.18 -1.96 6.95 2.78 0.02 -1.94 16 28 C 0.06 0.64 6.47 -3.54 -0.02 0.62 16 29 C 0.05 0.62 6.98 37.31 0.26 0.88 16 30 O -0.36 -6.09 9.24 -35.23 -0.33 -6.41 16 31 H 0.03 0.53 6.41 -51.93 -0.33 0.20 16 32 H 0.05 1.04 8.14 -51.92 -0.42 0.62 16 33 H 0.06 1.12 7.56 -51.93 -0.39 0.73 16 34 H 0.39 10.69 7.58 -40.82 -0.31 10.38 16 35 H 0.25 7.49 8.31 -40.82 -0.34 7.15 16 36 H 0.09 1.19 6.28 -51.93 -0.33 0.87 16 37 H 0.10 1.54 7.10 -51.93 -0.37 1.18 16 38 H 0.17 1.62 8.06 -52.49 -0.42 1.20 16 39 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 40 H 0.13 0.46 8.06 -52.49 -0.42 0.04 16 41 H 0.14 0.43 8.06 -52.49 -0.42 0.01 16 42 H 0.14 0.75 8.06 -52.49 -0.42 0.33 16 43 H 0.12 1.22 3.88 -55.10 -0.21 1.00 16 44 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 45 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 46 H 0.11 1.13 8.14 -51.93 -0.42 0.70 16 LS Contribution 376.97 15.07 5.68 5.68 Total: -1.00 -33.48 376.97 -9.02 -42.49 By element: Atomic # 1 Polarization: 14.44 SS G_CDS: -6.14 Total: 8.30 kcal Atomic # 6 Polarization: 1.01 SS G_CDS: -3.24 Total: -2.23 kcal Atomic # 7 Polarization: -54.87 SS G_CDS: -0.07 Total: -54.94 kcal Atomic # 8 Polarization: -16.64 SS G_CDS: -0.22 Total: -16.86 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -5.02 Total: 17.56 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -33.48 -9.02 -42.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506848433.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.364 kcal (2) G-P(sol) polarization free energy of solvation -33.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds