Wall clock time and date at job start Wed Apr 1 2020 02:46:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47150 * 2 1 4 4 C 1.50701 * 109.47217 * 119.99698 * 2 1 3 5 5 O 1.21289 * 120.00142 * 97.36862 * 4 2 1 6 6 N 1.34776 * 120.00002 * 277.37870 * 4 2 1 7 7 C 1.37096 * 120.00127 * 5.79085 * 6 4 2 8 8 H 1.08003 * 120.00348 * 321.24036 * 7 6 4 9 9 C 1.38955 * 119.99960 * 141.23394 * 7 6 4 10 10 N 1.31412 * 120.00042 * 340.85127 * 9 7 6 11 11 Si 1.86797 * 119.99751 * 160.84903 * 9 7 6 12 12 H 1.48503 * 109.47098 * 90.00306 * 11 9 7 13 13 H 1.48508 * 109.46744 * 209.99945 * 11 9 7 14 14 H 1.48496 * 109.47494 * 330.00193 * 11 9 7 15 15 C 1.46504 * 120.00109 * 185.79716 * 6 4 2 16 16 C 1.53002 * 109.46912 * 84.19517 * 15 6 4 17 17 C 1.50705 * 109.46779 * 180.02562 * 16 15 6 18 18 O 1.20821 * 120.00049 * 0.02562 * 17 16 15 19 19 O 1.34231 * 119.99504 * 179.97438 * 17 16 15 20 20 C 1.50698 * 109.47518 * 239.99691 * 2 1 3 21 21 C 1.34243 * 126.50038 * 300.34174 * 20 2 1 22 22 N 1.36828 * 109.92985 * 180.14641 * 21 20 2 23 23 C 1.46497 * 125.06594 * 179.81793 * 22 21 20 24 24 C 1.37694 * 109.87238 * 359.55255 * 22 21 20 25 25 C 1.39124 * 133.50684 * 180.26489 * 24 22 21 26 26 C 1.37750 * 119.77624 * 179.97438 * 25 24 22 27 27 C 1.38829 * 120.66731 * 0.02562 * 26 25 24 28 28 C 1.36620 * 120.53154 * 359.97438 * 27 26 25 29 29 C 1.39633 * 119.75822 * 0.02562 * 28 27 26 30 30 H 1.08997 * 109.46805 * 180.91878 * 1 2 3 31 31 H 1.08995 * 109.46940 * 300.92127 * 1 2 3 32 32 H 1.09004 * 109.46435 * 60.92099 * 1 2 3 33 33 H 0.96998 * 120.00127 * 179.97438 * 10 9 7 34 34 H 1.08994 * 109.47186 * 204.19769 * 15 6 4 35 35 H 1.09002 * 109.47070 * 324.19609 * 15 6 4 36 36 H 1.09007 * 109.47416 * 299.99819 * 16 15 6 37 37 H 1.08994 * 109.47486 * 60.00263 * 16 15 6 38 38 H 0.96702 * 116.99523 * 179.97438 * 19 17 16 39 39 H 1.07998 * 125.03521 * 359.97438 * 21 20 2 40 40 H 1.09001 * 109.46938 * 269.69776 * 23 22 21 41 41 H 1.08999 * 109.47716 * 149.69468 * 23 22 21 42 42 H 1.08998 * 109.47232 * 29.69246 * 23 22 21 43 43 H 1.08004 * 120.11117 * 0.02562 * 25 24 22 44 44 H 1.08011 * 119.66532 * 179.97438 * 26 25 24 45 45 H 1.08003 * 119.73484 * 179.97438 * 27 26 25 46 46 H 1.07996 * 120.12146 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 8 2.3615 -1.8759 1.1660 6 7 2.1157 -0.0505 2.4027 7 6 1.6335 1.2288 2.5050 8 1 1.7675 1.9233 1.6888 9 6 0.9723 1.6319 3.6588 10 7 0.4762 0.7336 4.4797 11 14 0.7887 3.4507 4.0429 12 1 -0.4706 3.9589 3.4418 13 1 0.7479 3.6441 5.5148 14 1 1.9426 4.1950 3.4776 15 6 2.7216 -0.7002 3.5676 16 6 4.2413 -0.5316 3.5126 17 6 4.8646 -1.2005 4.7106 18 8 4.1652 -1.7555 5.5245 19 8 6.1969 -1.1805 4.8727 20 6 2.0324 -0.7104 -1.2304 21 6 1.7847 -1.9843 -1.5740 22 7 2.4105 -2.2790 -2.7546 23 6 2.3643 -3.5780 -3.4302 24 6 3.0852 -1.1710 -3.2160 25 6 3.8627 -0.9235 -4.3429 26 6 4.4181 0.3230 -4.5305 27 6 4.2107 1.3372 -3.6054 28 6 3.4507 1.1161 -2.4918 29 6 2.8781 -0.1400 -2.2818 30 1 -0.3633 -1.0275 0.0165 31 1 -0.3633 0.5281 0.8816 32 1 -0.3632 0.4995 -0.8982 33 1 0.0150 1.0150 5.2853 34 1 2.3380 -0.2425 4.4794 35 1 2.4734 -1.7616 3.5617 36 1 4.6249 -0.9894 2.6008 37 1 4.4896 0.5297 3.5185 38 1 6.5504 -1.6226 5.6568 39 1 1.1831 -2.6750 -1.0019 40 1 3.1919 -4.1972 -3.0841 41 1 2.4464 -3.4307 -4.5071 42 1 1.4203 -4.0729 -3.2022 43 1 4.0295 -1.7058 -5.0686 44 1 5.0218 0.5131 -5.4058 45 1 4.6537 2.3088 -3.7673 46 1 3.2933 1.9099 -1.7767 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589341618.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:46:33 Heat of formation + Delta-G solvation = -63.915452 kcal Electronic energy + Delta-G solvation = -30509.081712 eV Core-core repulsion = 26364.367645 eV Total energy + Delta-G solvation = -4144.714067 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.07790 -39.81421 -38.62888 -36.79907 -35.81122 -34.99060 -33.86176 -31.94251 -31.36744 -30.13896 -30.08816 -28.29002 -25.88365 -25.17267 -24.53063 -22.83022 -22.27410 -21.16028 -20.59453 -19.50293 -18.69441 -17.75022 -16.93694 -16.54054 -16.14842 -15.81249 -15.76854 -15.40541 -15.16688 -15.09959 -14.46014 -14.24671 -13.77756 -13.72131 -13.56567 -13.02461 -12.93443 -12.83084 -12.64217 -12.45080 -12.36021 -12.30546 -11.80848 -11.57809 -11.44785 -11.25844 -11.13864 -11.08524 -11.01878 -10.93603 -10.75420 -10.44784 -10.35791 -10.30488 -10.11209 -9.97096 -9.26989 -9.10043 -8.37030 -7.85134 -7.54797 -7.17694 -6.37748 -4.10699 1.42123 1.88349 2.68117 3.03906 3.11169 3.12044 3.22176 3.24534 3.44468 3.91694 4.13089 4.19253 4.80897 4.82991 4.91145 4.95585 5.18887 5.21203 5.24579 5.34373 5.43671 5.61593 5.62446 5.71745 5.81840 5.91764 5.95791 6.00210 6.06253 6.16331 6.17775 6.31364 6.34609 6.41903 6.60346 6.64730 6.80583 6.83557 6.86923 6.93455 6.99061 7.09860 7.23033 7.32706 7.46399 7.54326 7.64404 7.92724 8.30570 8.35083 9.06611 9.49397 9.91847 10.64817 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.009701 B = 0.003794 C = 0.003321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2885.499411 B = 7379.132478 C = 8430.371762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.017 4.017 3 H 0.091 0.909 4 C 0.486 3.514 5 O -0.598 6.598 6 N -0.440 5.440 7 C -0.345 4.345 8 H 0.091 0.909 9 C 0.046 3.954 10 N -0.855 5.855 11 Si 0.909 3.091 12 H -0.276 1.276 13 H -0.283 1.283 14 H -0.268 1.268 15 C 0.132 3.868 16 C -0.126 4.126 17 C 0.483 3.517 18 O -0.514 6.514 19 O -0.525 6.525 20 C -0.145 4.145 21 C 0.082 3.918 22 N -0.493 5.493 23 C 0.084 3.916 24 C 0.093 3.907 25 C -0.133 4.133 26 C -0.108 4.108 27 C -0.155 4.155 28 C -0.067 4.067 29 C -0.096 4.096 30 H 0.046 0.954 31 H 0.078 0.922 32 H 0.049 0.951 33 H 0.270 0.730 34 H 0.111 0.889 35 H 0.063 0.937 36 H 0.097 0.903 37 H 0.104 0.896 38 H 0.401 0.599 39 H 0.167 0.833 40 H 0.065 0.935 41 H 0.075 0.925 42 H 0.080 0.920 43 H 0.112 0.888 44 H 0.118 0.882 45 H 0.117 0.883 46 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.327 -1.476 -12.050 13.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.039 4.039 3 H 0.109 0.891 4 C 0.275 3.725 5 O -0.483 6.483 6 N -0.159 5.159 7 C -0.472 4.472 8 H 0.109 0.891 9 C -0.161 4.161 10 N -0.490 5.490 11 Si 0.735 3.265 12 H -0.201 1.201 13 H -0.208 1.208 14 H -0.193 1.193 15 C 0.008 3.992 16 C -0.165 4.165 17 C 0.325 3.675 18 O -0.402 6.402 19 O -0.336 6.336 20 C -0.152 4.152 21 C -0.042 4.042 22 N -0.177 5.177 23 C -0.058 4.058 24 C -0.013 4.013 25 C -0.154 4.154 26 C -0.128 4.128 27 C -0.174 4.174 28 C -0.085 4.085 29 C -0.101 4.101 30 H 0.065 0.935 31 H 0.097 0.903 32 H 0.068 0.932 33 H 0.081 0.919 34 H 0.129 0.871 35 H 0.081 0.919 36 H 0.115 0.885 37 H 0.122 0.878 38 H 0.258 0.742 39 H 0.184 0.816 40 H 0.083 0.917 41 H 0.093 0.907 42 H 0.099 0.901 43 H 0.130 0.870 44 H 0.136 0.864 45 H 0.135 0.865 46 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 4.967 -2.354 -12.119 13.307 hybrid contribution 0.213 0.529 0.891 1.058 sum 5.180 -1.826 -11.228 12.499 Atomic orbital electron populations 1.21594 0.93015 1.01583 1.02280 1.19295 0.96605 0.99131 0.88861 0.89080 1.20404 0.80290 0.86232 0.85583 1.90504 1.54635 1.16903 1.86225 1.43307 1.50991 1.13924 1.07630 1.19355 1.36127 0.87293 1.04445 0.89111 1.25375 0.94392 0.99064 0.97228 1.69939 1.32199 1.33793 1.13102 0.86233 0.79014 0.83355 0.77918 1.20137 1.20824 1.19256 1.21069 0.86413 0.98674 0.93035 1.21908 0.99289 1.01828 0.93503 1.23810 0.79398 0.76940 0.87340 1.90701 1.62730 1.42131 1.44615 1.84599 1.25344 1.73875 1.49822 1.19950 1.04237 0.94042 0.96950 1.21593 0.99300 0.96888 0.86370 1.43773 1.43986 1.09549 1.20398 1.21834 1.03177 0.83261 0.97577 1.18227 0.98986 0.87170 0.96903 1.19899 1.01199 0.97892 0.96425 1.20677 1.00232 0.92531 0.99318 1.20527 1.02097 0.99183 0.95642 1.20315 0.95945 0.95194 0.97063 1.19160 1.01550 0.93703 0.95650 0.93454 0.90314 0.93159 0.91938 0.87090 0.91856 0.88525 0.87822 0.74193 0.81557 0.91663 0.90673 0.90126 0.87017 0.86409 0.86495 0.86077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.33 8.97 37.16 0.33 -1.99 16 2 C -0.02 -0.34 2.41 -92.92 -0.22 -0.56 16 3 H 0.09 1.77 6.66 -51.93 -0.35 1.42 16 4 C 0.49 11.27 6.72 -10.99 -0.07 11.20 16 5 O -0.60 -14.98 14.82 5.55 0.08 -14.90 16 6 N -0.44 -10.51 2.53 -114.81 -0.29 -10.80 16 7 C -0.34 -8.16 7.75 -14.93 -0.12 -8.27 16 8 H 0.09 2.04 6.53 -52.48 -0.34 1.70 16 9 C 0.05 1.11 4.94 -17.47 -0.09 1.03 16 10 N -0.85 -22.12 11.50 55.50 0.64 -21.48 16 11 Si 0.91 18.70 29.59 -169.99 -5.03 13.67 16 12 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 13 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 14 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 15 C 0.13 3.13 4.21 -4.04 -0.02 3.11 16 16 C -0.13 -2.50 6.09 -27.88 -0.17 -2.67 16 17 C 0.48 8.98 8.33 36.01 0.30 9.28 16 18 O -0.51 -11.07 16.74 -18.75 -0.31 -11.39 16 19 O -0.52 -7.65 13.42 -39.26 -0.53 -8.17 16 20 C -0.15 -2.71 4.86 -102.71 -0.50 -3.21 16 21 C 0.08 1.43 9.72 -16.73 -0.16 1.26 16 22 N -0.49 -7.44 3.18 -121.81 -0.39 -7.83 16 23 C 0.08 0.86 11.03 59.85 0.66 1.52 16 24 C 0.09 1.48 6.81 -83.99 -0.57 0.91 16 25 C -0.13 -1.78 9.97 -39.43 -0.39 -2.17 16 26 C -0.11 -1.35 10.01 -39.54 -0.40 -1.74 16 27 C -0.16 -2.05 9.97 -39.95 -0.40 -2.45 16 28 C -0.07 -1.03 10.05 -39.65 -0.40 -1.43 16 29 C -0.10 -1.67 6.35 -105.14 -0.67 -2.34 16 30 H 0.05 0.85 8.04 -51.93 -0.42 0.44 16 31 H 0.08 1.58 7.27 -51.93 -0.38 1.20 16 32 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.27 6.68 8.31 -40.82 -0.34 6.35 16 34 H 0.11 2.85 5.57 -51.93 -0.29 2.57 16 35 H 0.06 1.62 7.48 -51.93 -0.39 1.23 16 36 H 0.10 1.92 8.14 -51.93 -0.42 1.49 16 37 H 0.10 1.94 8.14 -51.93 -0.42 1.52 16 38 H 0.40 3.88 9.10 45.56 0.41 4.29 16 39 H 0.17 2.83 7.90 -52.49 -0.41 2.41 16 40 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.07 0.62 8.10 -51.93 -0.42 0.20 16 42 H 0.08 0.69 8.13 -51.93 -0.42 0.27 16 43 H 0.11 1.20 8.06 -52.48 -0.42 0.78 16 44 H 0.12 1.12 8.06 -52.48 -0.42 0.70 16 45 H 0.12 1.25 8.06 -52.48 -0.42 0.83 16 46 H 0.12 1.75 8.06 -52.49 -0.42 1.33 16 LS Contribution 389.19 15.07 5.86 5.86 Total: -1.00 -31.66 389.19 -8.36 -40.02 By element: Atomic # 1 Polarization: 19.08 SS G_CDS: -5.52 Total: 13.55 kcal Atomic # 6 Polarization: 4.35 SS G_CDS: -2.88 Total: 1.46 kcal Atomic # 7 Polarization: -40.07 SS G_CDS: -0.04 Total: -40.11 kcal Atomic # 8 Polarization: -33.70 SS G_CDS: -0.76 Total: -34.46 kcal Atomic # 14 Polarization: 18.70 SS G_CDS: -5.03 Total: 13.67 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -31.66 -8.36 -40.02 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589341618.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.892 kcal (2) G-P(sol) polarization free energy of solvation -31.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds