Wall clock time and date at job start Wed Apr 1 2020 02:46:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.47084 * 2 1 4 4 C 1.50700 * 109.47360 * 239.99749 * 2 1 3 5 5 O 1.21288 * 119.99979 * 248.12211 * 4 2 1 6 6 N 1.34772 * 119.99713 * 68.11773 * 4 2 1 7 7 C 1.37100 * 120.00062 * 5.23825 * 6 4 2 8 8 H 1.08000 * 119.99337 * 232.06342 * 7 6 4 9 9 C 1.38950 * 120.00434 * 52.06640 * 7 6 4 10 10 N 1.31406 * 119.99961 * 199.33547 * 9 7 6 11 11 Si 1.86798 * 119.99615 * 19.33273 * 9 7 6 12 12 H 1.48498 * 109.47170 * 84.90087 * 11 9 7 13 13 H 1.48503 * 109.46869 * 204.89623 * 11 9 7 14 14 H 1.48502 * 109.47380 * 324.89738 * 11 9 7 15 15 C 1.46502 * 119.99753 * 185.22693 * 6 4 2 16 16 C 1.53004 * 109.46495 * 91.65228 * 15 6 4 17 17 C 1.50707 * 109.46928 * 179.97438 * 16 15 6 18 18 O 1.20824 * 119.99698 * 359.97438 * 17 16 15 19 19 O 1.34228 * 119.99748 * 180.02562 * 17 16 15 20 20 C 1.50705 * 109.47051 * 119.99730 * 2 1 3 21 21 C 1.34231 * 126.50180 * 59.97841 * 20 2 1 22 22 N 1.36834 * 109.93174 * 180.02562 * 21 20 2 23 23 C 1.46498 * 125.06284 * 179.97438 * 22 21 20 24 24 C 1.37687 * 109.86937 * 359.97438 * 22 21 20 25 25 C 1.39131 * 133.49730 * 179.70801 * 24 22 21 26 26 C 1.37743 * 119.77171 * 179.97438 * 25 24 22 27 27 C 1.38826 * 120.67074 * 0.38430 * 26 25 24 28 28 C 1.36632 * 120.52939 * 359.82861 * 27 26 25 29 29 C 1.39630 * 119.75982 * 359.97438 * 28 27 26 30 30 H 1.09001 * 109.47401 * 294.32112 * 1 2 3 31 31 H 1.08997 * 109.47433 * 54.32349 * 1 2 3 32 32 H 1.09000 * 109.46778 * 174.32180 * 1 2 3 33 33 H 0.96999 * 120.00253 * 179.97438 * 10 9 7 34 34 H 1.09002 * 109.47140 * 211.64197 * 15 6 4 35 35 H 1.08991 * 109.47362 * 331.65139 * 15 6 4 36 36 H 1.08997 * 109.47253 * 299.99487 * 16 15 6 37 37 H 1.08999 * 109.47255 * 60.00218 * 16 15 6 38 38 H 0.96702 * 116.99267 * 180.02562 * 19 17 16 39 39 H 1.08000 * 125.03709 * 0.02562 * 21 20 2 40 40 H 1.08998 * 109.47086 * 270.02033 * 23 22 21 41 41 H 1.09003 * 109.47574 * 30.02226 * 23 22 21 42 42 H 1.08994 * 109.47117 * 150.02382 * 23 22 21 43 43 H 1.07991 * 120.11067 * 0.30277 * 25 24 22 44 44 H 1.08001 * 119.66516 * 180.16574 * 26 25 24 45 45 H 1.08003 * 119.73817 * 179.80766 * 27 26 25 46 46 H 1.07993 * 120.12014 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 2.6035 -1.7752 -1.1251 6 7 1.8469 -0.1626 -2.4477 7 6 1.2983 1.0888 -2.5599 8 1 0.4497 1.2501 -3.2082 9 6 1.8340 2.1494 -1.8397 10 7 1.1190 3.2330 -1.6360 11 14 3.5705 2.0349 -1.1609 12 1 4.5398 2.4408 -2.2101 13 1 3.7041 2.9362 0.0117 14 1 3.8481 0.6367 -0.7447 15 6 2.2317 -0.9044 -3.6511 16 6 1.0354 -1.7141 -4.1553 17 6 1.4310 -2.4767 -5.3935 18 8 2.5543 -2.3818 -5.8283 19 8 0.5351 -3.2604 -6.0138 20 6 2.0323 -0.7104 1.2305 21 6 1.7895 -1.9858 1.5713 22 7 2.4102 -2.2787 2.7550 23 6 2.3636 -3.5776 3.4309 24 6 3.0852 -1.1707 3.2161 25 6 3.8585 -0.9218 4.3456 26 6 4.4165 0.3237 4.5316 27 6 4.2090 1.3379 3.6066 28 6 3.4495 1.1166 2.4927 29 6 2.8776 -0.1397 2.2821 30 1 -0.3634 0.4232 0.9365 31 1 -0.3634 0.5993 -0.8348 32 1 -0.3633 -1.0226 -0.1017 33 1 1.4928 3.9733 -1.1329 34 1 2.5479 -0.2039 -4.4240 35 1 3.0537 -1.5797 -3.4143 36 1 0.7190 -2.4146 -3.3824 37 1 0.2133 -1.0387 -4.3921 38 1 0.8354 -3.7300 -6.8040 39 1 1.1926 -2.6783 0.9963 40 1 1.5128 -3.6025 4.1119 41 1 2.2587 -4.3696 2.6894 42 1 3.2844 -3.7271 3.9945 43 1 4.0251 -1.7040 5.0713 44 1 5.0187 0.5143 5.4076 45 1 4.6512 2.3098 3.7690 46 1 3.2927 1.9102 1.7772 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589341619.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:46:37 Heat of formation + Delta-G solvation = -51.299640 kcal Electronic energy + Delta-G solvation = -31043.127437 eV Core-core repulsion = 26898.960433 eV Total energy + Delta-G solvation = -4144.167004 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.08159 -40.04579 -39.00135 -36.76707 -36.01301 -34.96139 -34.11959 -32.52137 -31.17548 -30.34721 -30.07782 -28.28520 -25.85156 -25.26520 -24.44174 -22.95268 -22.28427 -21.18649 -20.82038 -19.77767 -18.71257 -17.91694 -17.18007 -16.67751 -16.33362 -16.08370 -15.83300 -15.30554 -15.15119 -15.00300 -14.74089 -14.35489 -13.89782 -13.62787 -13.49732 -13.33527 -13.11335 -12.85495 -12.68905 -12.59925 -12.45238 -12.35169 -12.18710 -11.68674 -11.45170 -11.35688 -11.33019 -11.10847 -11.07697 -10.90824 -10.80653 -10.49904 -10.35295 -10.30769 -10.12263 -9.72976 -9.23680 -9.00989 -8.54495 -7.81994 -7.67586 -7.15878 -6.52999 -4.27542 1.45698 1.92623 2.45328 3.04729 3.09454 3.13575 3.21543 3.24141 3.36551 3.80651 4.11319 4.21004 4.55306 4.82769 4.85909 4.94723 5.19431 5.22408 5.24580 5.33853 5.35335 5.43547 5.50458 5.64676 5.68618 5.77055 5.92784 5.98618 6.03937 6.04078 6.18643 6.20619 6.27147 6.39650 6.45798 6.57958 6.68072 6.70157 6.74378 6.87005 6.94251 7.06847 7.18034 7.26272 7.55433 7.63445 7.66962 7.68655 8.09669 8.41538 8.95348 9.23748 9.67806 10.55251 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.011871 B = 0.004228 C = 0.003482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2358.049941 B = 6621.038881 C = 8039.011074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.022 4.022 3 H 0.094 0.906 4 C 0.505 3.495 5 O -0.585 6.585 6 N -0.475 5.475 7 C -0.351 4.351 8 H 0.100 0.900 9 C 0.081 3.919 10 N -0.851 5.851 11 Si 0.843 3.157 12 H -0.277 1.277 13 H -0.274 1.274 14 H -0.247 1.247 15 C 0.121 3.879 16 C -0.123 4.123 17 C 0.484 3.516 18 O -0.519 6.519 19 O -0.522 6.522 20 C -0.140 4.140 21 C 0.078 3.922 22 N -0.492 5.492 23 C 0.084 3.916 24 C 0.095 3.905 25 C -0.133 4.133 26 C -0.106 4.106 27 C -0.154 4.154 28 C -0.073 4.073 29 C -0.095 4.095 30 H 0.049 0.951 31 H 0.091 0.909 32 H 0.041 0.959 33 H 0.277 0.723 34 H 0.079 0.921 35 H 0.074 0.926 36 H 0.102 0.898 37 H 0.110 0.890 38 H 0.403 0.597 39 H 0.165 0.835 40 H 0.064 0.936 41 H 0.080 0.920 42 H 0.075 0.925 43 H 0.113 0.887 44 H 0.120 0.880 45 H 0.118 0.882 46 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.010 -8.911 6.925 11.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.044 4.044 3 H 0.112 0.888 4 C 0.295 3.705 5 O -0.468 6.468 6 N -0.197 5.197 7 C -0.478 4.478 8 H 0.118 0.882 9 C -0.127 4.127 10 N -0.485 5.485 11 Si 0.668 3.332 12 H -0.204 1.204 13 H -0.199 1.199 14 H -0.171 1.171 15 C -0.003 4.003 16 C -0.161 4.161 17 C 0.326 3.674 18 O -0.407 6.407 19 O -0.333 6.333 20 C -0.147 4.147 21 C -0.046 4.046 22 N -0.177 5.177 23 C -0.058 4.058 24 C -0.011 4.011 25 C -0.154 4.154 26 C -0.125 4.125 27 C -0.173 4.173 28 C -0.091 4.091 29 C -0.100 4.100 30 H 0.069 0.931 31 H 0.110 0.890 32 H 0.060 0.940 33 H 0.087 0.913 34 H 0.098 0.902 35 H 0.093 0.907 36 H 0.121 0.879 37 H 0.128 0.872 38 H 0.261 0.739 39 H 0.182 0.818 40 H 0.083 0.917 41 H 0.099 0.901 42 H 0.094 0.906 43 H 0.131 0.869 44 H 0.138 0.862 45 H 0.136 0.864 46 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -0.619 -9.332 7.411 11.933 hybrid contribution 1.200 -0.114 -0.299 1.242 sum 0.581 -9.446 7.112 11.838 Atomic orbital electron populations 1.21611 0.92439 1.01195 1.03135 1.19498 0.97328 0.99190 0.88371 0.88813 1.20502 0.79900 0.84814 0.85256 1.90527 1.45137 1.24119 1.86990 1.43610 1.57570 1.15964 1.02573 1.18835 1.14345 0.82554 1.32095 0.88211 1.25528 0.96968 0.94869 0.95370 1.69699 1.35975 1.06193 1.36606 0.87500 0.86064 0.80424 0.79234 1.20363 1.19927 1.17108 1.21207 0.94055 0.95631 0.89433 1.21791 1.03075 0.99295 0.91986 1.23749 0.82477 0.76276 0.84852 1.90701 1.22019 1.62325 1.65654 1.84585 1.46338 1.58264 1.44154 1.19960 1.03831 0.94030 0.96894 1.21429 0.99741 0.96660 0.86756 1.43706 1.44197 1.09571 1.20186 1.21827 1.02653 0.83276 0.98002 1.18200 0.98929 0.87122 0.96826 1.19886 1.01267 0.97877 0.96358 1.20675 1.00130 0.92510 0.99235 1.20536 1.02000 0.99301 0.95504 1.20478 0.96001 0.95423 0.97189 1.19132 1.01445 0.93642 0.95755 0.93146 0.89023 0.93979 0.91251 0.90223 0.90744 0.87932 0.87202 0.73881 0.81781 0.91746 0.90105 0.90638 0.86870 0.86244 0.86421 0.86394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.45 8.84 37.16 0.33 -2.12 16 2 C -0.02 -0.49 1.63 -92.92 -0.15 -0.64 16 3 H 0.09 2.21 3.21 -51.93 -0.17 2.05 16 4 C 0.51 11.77 4.50 -10.99 -0.05 11.72 16 5 O -0.58 -14.47 14.79 5.55 0.08 -14.38 16 6 N -0.48 -10.81 1.95 -114.81 -0.22 -11.03 16 7 C -0.35 -8.49 7.60 -14.93 -0.11 -8.60 16 8 H 0.10 2.50 8.06 -52.49 -0.42 2.07 16 9 C 0.08 2.04 4.15 -17.47 -0.07 1.97 16 10 N -0.85 -21.99 13.96 55.50 0.77 -21.22 16 11 Si 0.84 20.40 23.86 -169.99 -4.06 16.34 16 12 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 13 H -0.27 -6.31 6.32 56.52 0.36 -5.96 16 14 H -0.25 -6.35 5.33 56.52 0.30 -6.05 16 15 C 0.12 2.46 4.73 -4.04 -0.02 2.44 16 16 C -0.12 -2.03 6.13 -27.88 -0.17 -2.20 16 17 C 0.48 7.55 8.33 36.01 0.30 7.85 16 18 O -0.52 -9.59 16.74 -18.75 -0.31 -9.90 16 19 O -0.52 -6.32 13.42 -39.25 -0.53 -6.85 16 20 C -0.14 -2.90 4.71 -102.71 -0.48 -3.39 16 21 C 0.08 1.40 9.89 -16.73 -0.17 1.24 16 22 N -0.49 -7.85 3.18 -121.81 -0.39 -8.24 16 23 C 0.08 0.89 11.03 59.85 0.66 1.55 16 24 C 0.10 1.66 6.81 -83.99 -0.57 1.09 16 25 C -0.13 -1.96 9.97 -39.43 -0.39 -2.35 16 26 C -0.11 -1.50 10.01 -39.54 -0.40 -1.90 16 27 C -0.15 -2.46 9.97 -39.94 -0.40 -2.86 16 28 C -0.07 -1.39 10.05 -39.64 -0.40 -1.79 16 29 C -0.09 -1.91 6.35 -105.14 -0.67 -2.58 16 30 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.09 1.92 6.52 -51.93 -0.34 1.58 16 32 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.28 6.81 8.31 -40.82 -0.34 6.47 16 34 H 0.08 1.63 8.01 -51.93 -0.42 1.21 16 35 H 0.07 1.62 7.27 -51.93 -0.38 1.24 16 36 H 0.10 1.67 8.14 -51.93 -0.42 1.24 16 37 H 0.11 1.71 8.14 -51.93 -0.42 1.29 16 38 H 0.40 3.01 9.10 45.56 0.41 3.42 16 39 H 0.16 2.69 8.06 -52.49 -0.42 2.27 16 40 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 41 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.07 0.69 8.10 -51.93 -0.42 0.27 16 43 H 0.11 1.32 8.06 -52.49 -0.42 0.89 16 44 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 45 H 0.12 1.59 8.06 -52.48 -0.42 1.16 16 46 H 0.12 2.38 5.85 -52.49 -0.31 2.07 16 LS Contribution 376.85 15.07 5.68 5.68 Total: -1.00 -31.96 376.85 -7.28 -39.24 By element: Atomic # 1 Polarization: 16.46 SS G_CDS: -5.54 Total: 10.92 kcal Atomic # 6 Polarization: 2.20 SS G_CDS: -2.76 Total: -0.56 kcal Atomic # 7 Polarization: -40.65 SS G_CDS: 0.16 Total: -40.49 kcal Atomic # 8 Polarization: -30.37 SS G_CDS: -0.76 Total: -31.13 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -4.06 Total: 16.34 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -31.96 -7.28 -39.24 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589341619.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.064 kcal (2) G-P(sol) polarization free energy of solvation -31.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds