Wall clock time and date at job start Wed Apr 1 2020 03:49:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47140 * 2 1 4 4 C 1.50706 * 109.47103 * 239.99953 * 2 1 3 5 5 O 1.21274 * 120.00042 * 239.72235 * 4 2 1 6 6 N 1.34777 * 119.99766 * 59.99771 * 4 2 1 7 7 C 1.46496 * 120.00266 * 179.97438 * 6 4 2 8 8 C 1.50699 * 109.47317 * 180.02562 * 7 6 4 9 9 C 1.38236 * 120.00094 * 269.72732 * 8 7 6 10 10 C 1.38236 * 120.00210 * 179.74695 * 9 8 7 11 11 C 1.38235 * 119.99619 * 0.52542 * 10 9 8 12 12 C 1.50700 * 119.99870 * 179.77061 * 11 10 9 13 13 C 1.53005 * 109.47077 * 269.97845 * 12 11 10 14 14 N 1.46502 * 109.47150 * 179.97438 * 13 12 11 15 15 C 1.36928 * 120.00020 * 180.02562 * 14 13 12 16 16 H 1.07999 * 120.00288 * 359.97438 * 15 14 13 17 17 C 1.38807 * 120.00053 * 180.02562 * 15 14 13 18 18 N 1.31621 * 120.00089 * 179.97438 * 17 15 14 19 19 Si 1.86800 * 120.00109 * 359.97438 * 17 15 14 20 20 H 1.48507 * 109.47153 * 90.00208 * 19 17 15 21 21 H 1.48495 * 109.47465 * 210.00273 * 19 17 15 22 22 H 1.48496 * 109.46910 * 330.00491 * 19 17 15 23 23 C 1.38237 * 120.00188 * 359.75467 * 11 10 9 24 24 C 1.38234 * 119.99970 * 359.96975 * 23 11 10 25 25 C 1.52999 * 109.47269 * 120.00547 * 2 1 3 26 26 F 1.39897 * 109.47114 * 180.02562 * 25 2 1 27 27 F 1.39905 * 109.46699 * 299.99751 * 25 2 1 28 28 F 1.39895 * 109.47493 * 59.99523 * 25 2 1 29 29 H 1.09001 * 109.47230 * 299.99144 * 1 2 3 30 30 H 1.09001 * 109.47375 * 59.99983 * 1 2 3 31 31 H 1.09000 * 109.47140 * 179.97438 * 1 2 3 32 32 H 0.96999 * 120.00043 * 0.02562 * 6 4 2 33 33 H 1.09004 * 109.47212 * 300.00463 * 7 6 4 34 34 H 1.09000 * 109.46684 * 60.00307 * 7 6 4 35 35 H 1.08002 * 119.99598 * 359.97438 * 9 8 7 36 36 H 1.07995 * 119.99922 * 180.29830 * 10 9 8 37 37 H 1.08995 * 109.47275 * 29.98114 * 12 11 10 38 38 H 1.08997 * 109.47210 * 149.98349 * 12 11 10 39 39 H 1.08995 * 109.47288 * 300.00261 * 13 12 11 40 40 H 1.09005 * 109.46539 * 60.00460 * 13 12 11 41 41 H 0.97006 * 119.99517 * 0.02562 * 14 13 12 42 42 H 0.97005 * 119.99792 * 179.97438 * 18 17 15 43 43 H 1.08002 * 120.00057 * 179.97438 * 23 11 10 44 44 H 1.08002 * 120.00380 * 180.02562 * 24 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.7337 -1.6935 -1.1192 6 7 1.7067 -0.2500 -2.4546 7 6 2.1954 -0.9402 -3.6508 8 6 1.6934 -0.2295 -4.8812 9 6 0.4884 -0.5985 -5.4493 10 6 0.0254 0.0569 -6.5749 11 6 0.7726 1.0741 -7.1387 12 6 0.2703 1.7852 -8.3688 13 6 0.7807 1.0648 -9.6185 14 7 0.2920 1.7557 -10.8143 15 6 0.6226 1.2884 -12.0582 16 1 1.2440 0.4107 -12.1578 17 6 0.1599 1.9433 -13.1912 18 7 0.4781 1.4943 -14.3869 19 14 -0.9143 3.4618 -13.0192 20 1 -0.0559 4.6727 -12.9730 21 1 -1.8346 3.5514 -14.1811 22 1 -1.7063 3.3684 -11.7665 23 6 1.9803 1.4393 -6.5740 24 6 2.4406 0.7877 -5.4451 25 6 2.0400 -0.7214 1.2491 26 9 3.4390 -0.7208 1.2494 27 9 1.5737 -0.0619 2.3915 28 9 1.5737 -2.0403 1.2492 29 1 -0.3634 0.5137 0.8901 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.1493 0.5389 -2.5436 33 1 3.2854 -0.9398 -3.6507 34 1 1.8324 -1.9680 -3.6509 35 1 -0.0930 -1.3965 -5.0116 36 1 -0.9183 -0.2282 -7.0159 37 1 -0.8196 1.7850 -8.3690 38 1 0.6335 2.8129 -8.3682 39 1 1.8707 1.0650 -9.6183 40 1 0.4175 0.0370 -9.6191 41 1 -0.2659 2.5442 -10.7249 42 1 0.1545 1.9518 -15.1787 43 1 2.5643 2.2338 -7.0148 44 1 3.3840 1.0733 -5.0036 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690796930.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:49:58 Heat of formation + Delta-G solvation = -164.434847 kcal Electronic energy + Delta-G solvation = -28660.139333 eV Core-core repulsion = 23969.209678 eV Total energy + Delta-G solvation = -4690.929655 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.145 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -50.50150 -48.02089 -47.90474 -40.54439 -39.52685 -36.09409 -35.08340 -34.65176 -32.81760 -31.17007 -31.08260 -28.94795 -27.03539 -26.14562 -24.01435 -23.12897 -22.87903 -21.51688 -21.02666 -20.68181 -19.24643 -18.88849 -18.25001 -17.64988 -17.29079 -16.40549 -16.23394 -15.77728 -15.50943 -15.17664 -14.87448 -14.74284 -14.53398 -14.35751 -14.30874 -14.10309 -14.06606 -14.04561 -13.88484 -13.73560 -13.53214 -13.22284 -12.98371 -12.87076 -12.83116 -12.53413 -12.47013 -12.02347 -11.58516 -11.40050 -11.36819 -11.02635 -10.73806 -10.73663 -10.54459 -10.19646 -9.64874 -9.63203 -9.06728 -8.92725 -8.72670 -7.27726 -5.79805 -3.16089 1.01846 1.27094 1.93198 2.07361 2.58019 3.19440 3.33883 3.36322 3.42159 3.50211 3.52932 3.72618 4.11099 4.21432 4.32127 4.36017 4.55702 4.61600 4.76934 4.80112 4.86175 4.90477 4.98259 5.27460 5.30387 5.34996 5.39835 5.50359 5.59240 5.61857 5.70524 5.79149 5.87763 5.93922 6.06390 6.27347 6.35165 6.46481 6.66046 6.76399 6.81775 6.86196 7.52527 7.96062 8.38866 9.17595 9.89668 10.09235 11.38492 Molecular weight = 344.15amu Principal moments of inertia in cm(-1) A = 0.035737 B = 0.001534 C = 0.001514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.310634 B =18245.596450 C =18489.266912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.164 4.164 3 H 0.141 0.859 4 C 0.520 3.480 5 O -0.519 6.519 6 N -0.715 5.715 7 C 0.165 3.835 8 C -0.128 4.128 9 C -0.097 4.097 10 C -0.117 4.117 11 C -0.051 4.051 12 C -0.098 4.098 13 C 0.164 3.836 14 N -0.757 5.757 15 C -0.246 4.246 16 H 0.090 0.910 17 C 0.004 3.996 18 N -0.933 5.933 19 Si 0.886 3.114 20 H -0.284 1.284 21 H -0.290 1.290 22 H -0.277 1.277 23 C -0.117 4.117 24 C -0.097 4.097 25 C 0.473 3.527 26 F -0.173 7.173 27 F -0.181 7.181 28 F -0.171 7.171 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.077 0.923 32 H 0.405 0.595 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.122 0.878 36 H 0.126 0.874 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.029 0.971 40 H 0.028 0.972 41 H 0.361 0.639 42 H 0.260 0.740 43 H 0.126 0.874 44 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.145 -0.805 34.444 34.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.186 4.186 3 H 0.158 0.842 4 C 0.304 3.696 5 O -0.394 6.394 6 N -0.367 5.367 7 C 0.043 3.957 8 C -0.129 4.129 9 C -0.115 4.115 10 C -0.135 4.135 11 C -0.052 4.052 12 C -0.136 4.136 13 C 0.037 3.963 14 N -0.403 5.403 15 C -0.376 4.376 16 H 0.108 0.892 17 C -0.192 4.192 18 N -0.581 5.581 19 Si 0.716 3.284 20 H -0.210 1.210 21 H -0.217 1.217 22 H -0.204 1.204 23 C -0.135 4.135 24 C -0.116 4.116 25 C 0.418 3.582 26 F -0.154 7.154 27 F -0.163 7.163 28 F -0.153 7.153 29 H 0.103 0.897 30 H 0.104 0.896 31 H 0.096 0.904 32 H 0.240 0.760 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.140 0.860 36 H 0.144 0.856 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.046 0.954 40 H 0.046 0.954 41 H 0.193 0.807 42 H 0.070 0.930 43 H 0.144 0.856 44 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 0.495 -1.712 34.352 34.399 hybrid contribution -0.915 1.424 0.014 1.692 sum -0.420 -0.289 34.367 34.370 Atomic orbital electron populations 1.21868 0.89056 1.04944 1.05074 1.22651 1.01529 1.03117 0.91325 0.84163 1.19755 0.80845 0.84753 0.84245 1.90842 1.36616 1.25552 1.86362 1.45973 1.53642 1.32238 1.04861 1.20233 0.99518 0.95560 0.80398 1.19677 0.96471 0.98981 0.97762 1.21024 0.95255 0.99293 0.95976 1.21127 1.00446 0.96022 0.95953 1.20033 0.94182 0.95368 0.95646 1.20920 1.01211 0.99349 0.92131 1.20570 0.96839 0.94732 0.84128 1.42715 1.62080 1.33271 1.02235 1.19060 1.26616 1.10329 0.81600 0.89209 1.24688 1.00459 0.98980 0.95063 1.69707 1.49702 1.41937 0.96775 0.86524 0.80804 0.84151 0.76891 1.21047 1.21674 1.20362 1.21128 0.95942 1.00567 0.95902 1.21027 0.99277 0.95303 0.95963 1.19736 0.76008 0.77912 0.84509 1.93228 1.29196 1.96342 1.96653 1.93194 1.88562 1.80828 1.53671 1.93213 1.88261 1.37124 1.96651 0.89716 0.89600 0.90380 0.76043 0.90275 0.90262 0.86050 0.85631 0.90813 0.90806 0.95355 0.95413 0.80670 0.93023 0.85620 0.86054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.46 8.85 37.16 0.33 -0.13 16 2 C -0.16 -0.83 2.71 -91.77 -0.25 -1.08 16 3 H 0.14 0.33 8.14 -51.93 -0.42 -0.09 16 4 C 0.52 4.09 6.92 -10.98 -0.08 4.01 16 5 O -0.52 -6.32 14.83 5.56 0.08 -6.24 16 6 N -0.72 -4.33 5.44 -61.47 -0.33 -4.66 16 7 C 0.17 1.25 5.80 -5.20 -0.03 1.22 16 8 C -0.13 -1.07 5.25 -104.62 -0.55 -1.62 16 9 C -0.10 -0.87 9.70 -39.58 -0.38 -1.25 16 10 C -0.12 -1.25 9.70 -39.58 -0.38 -1.64 16 11 C -0.05 -0.61 5.13 -104.62 -0.54 -1.15 16 12 C -0.10 -1.39 5.46 -27.88 -0.15 -1.54 16 13 C 0.16 3.09 6.24 -4.04 -0.03 3.06 16 14 N -0.76 -17.80 5.41 -59.91 -0.32 -18.13 16 15 C -0.25 -6.99 10.47 -15.07 -0.16 -7.14 16 16 H 0.09 2.73 8.06 -52.49 -0.42 2.31 16 17 C 0.00 0.11 5.50 -17.43 -0.10 0.02 16 18 N -0.93 -29.25 13.97 55.49 0.78 -28.48 16 19 Si 0.89 21.80 27.74 -169.99 -4.71 17.09 16 20 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 21 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 22 H -0.28 -6.36 6.52 56.52 0.37 -5.99 16 23 C -0.12 -1.25 9.70 -39.58 -0.38 -1.64 16 24 C -0.10 -0.87 9.70 -39.58 -0.38 -1.26 16 25 C 0.47 3.76 2.42 37.16 0.09 3.85 16 26 F -0.17 -1.73 16.39 2.25 0.04 -1.69 16 27 F -0.18 -1.31 16.80 2.25 0.04 -1.27 16 28 F -0.17 -1.69 15.89 2.25 0.04 -1.65 16 29 H 0.08 0.18 7.80 -51.93 -0.41 -0.22 16 30 H 0.09 0.12 7.56 -51.93 -0.39 -0.28 16 31 H 0.08 0.32 7.80 -51.93 -0.41 -0.09 16 32 H 0.40 1.53 7.88 -40.82 -0.32 1.21 16 33 H 0.08 0.64 8.09 -51.93 -0.42 0.22 16 34 H 0.08 0.64 8.08 -51.93 -0.42 0.22 16 35 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 36 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 37 H 0.07 1.01 8.08 -51.93 -0.42 0.59 16 38 H 0.07 1.00 8.09 -51.93 -0.42 0.58 16 39 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.36 8.15 5.53 -40.82 -0.23 7.93 16 42 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 43 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 44 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 LS Contribution 382.71 15.07 5.77 5.77 Total: -1.00 -34.67 382.71 -7.61 -42.28 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: -5.98 Total: 3.28 kcal Atomic # 6 Polarization: -3.30 SS G_CDS: -2.99 Total: -6.29 kcal Atomic # 7 Polarization: -51.38 SS G_CDS: 0.12 Total: -51.27 kcal Atomic # 8 Polarization: -6.32 SS G_CDS: 0.08 Total: -6.24 kcal Atomic # 9 Polarization: -4.72 SS G_CDS: 0.11 Total: -4.61 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -4.71 Total: 17.09 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -34.67 -7.61 -42.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690796930.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.154 kcal (2) G-P(sol) polarization free energy of solvation -34.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds