Wall clock time and date at job start Wed Apr 1 2020 03:51:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09006 * 109.47050 * 2 1 4 4 C 1.50697 * 109.47257 * 119.99569 * 2 1 3 5 5 O 1.21280 * 119.99937 * 119.99916 * 4 2 1 6 6 N 1.34783 * 120.00199 * 300.00555 * 4 2 1 7 7 C 1.46490 * 119.99973 * 179.97438 * 6 4 2 8 8 C 1.50699 * 109.47167 * 179.97438 * 7 6 4 9 9 N 1.31790 * 119.09875 * 270.02191 * 8 7 6 10 10 C 1.32793 * 120.72305 * 179.97438 * 9 8 7 11 11 O 1.35506 * 120.51551 * 180.02562 * 10 9 8 12 12 C 1.39423 * 118.96901 * 359.75069 * 10 9 8 13 13 C 1.38181 * 118.35275 * 0.47061 * 12 10 9 14 14 C 1.50697 * 120.41367 * 179.80466 * 13 12 10 15 15 N 1.46499 * 109.47276 * 94.71971 * 14 13 12 16 16 C 1.36935 * 119.99938 * 180.02562 * 15 14 13 17 17 H 1.08000 * 120.00518 * 359.72965 * 16 15 14 18 18 C 1.38817 * 119.99990 * 179.97438 * 16 15 14 19 19 N 1.31617 * 119.99869 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99909 * 179.97438 * 18 16 15 21 21 H 1.48508 * 109.46676 * 90.00727 * 20 18 16 22 22 H 1.48502 * 109.46977 * 210.00025 * 20 18 16 23 23 H 1.48494 * 109.47494 * 330.00753 * 20 18 16 24 24 N 1.31763 * 119.09108 * 90.00041 * 8 7 6 25 25 C 1.53001 * 109.47244 * 240.00045 * 2 1 3 26 26 C 1.52996 * 109.47289 * 65.00053 * 25 2 1 27 27 F 1.39900 * 109.46807 * 184.99781 * 25 2 1 28 28 F 1.39893 * 109.46800 * 304.99927 * 25 2 1 29 29 H 1.09001 * 109.47039 * 300.00208 * 1 2 3 30 30 H 1.09000 * 109.47196 * 60.00326 * 1 2 3 31 31 H 1.08989 * 109.46970 * 179.97438 * 1 2 3 32 32 H 0.96998 * 119.99587 * 359.97438 * 6 4 2 33 33 H 1.09004 * 109.47512 * 60.00127 * 7 6 4 34 34 H 1.08994 * 109.47511 * 300.00073 * 7 6 4 35 35 H 0.96696 * 114.00421 * 90.00139 * 11 10 9 36 36 H 1.08004 * 120.81818 * 180.27222 * 12 10 9 37 37 H 1.09004 * 109.47205 * 334.71946 * 14 13 12 38 38 H 1.09005 * 109.47240 * 214.72155 * 14 13 12 39 39 H 0.96999 * 119.99984 * 0.02562 * 15 14 13 40 40 H 0.96996 * 119.99743 * 179.97438 * 19 18 16 41 41 H 1.09005 * 109.47184 * 59.99814 * 26 25 2 42 42 H 1.09001 * 109.47159 * 180.02562 * 26 25 2 43 43 H 1.09005 * 109.46757 * 300.00263 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 8 2.7296 -1.6964 1.1193 6 7 1.7067 -0.2498 2.4546 7 6 2.1946 -0.9407 3.6507 8 6 1.6928 -0.2299 4.8812 9 7 2.4199 0.7369 5.4042 10 6 2.0084 1.3851 6.4877 11 8 2.7592 2.3789 7.0216 12 6 0.7892 1.0311 7.0640 13 6 0.0621 0.0086 6.4853 14 6 -1.2596 -0.4149 7.0725 15 7 -2.3469 0.2828 6.3817 16 6 -3.6470 0.0561 6.7470 17 1 -3.8711 -0.6402 7.5416 18 6 -4.6772 0.7176 6.0928 19 7 -4.4044 1.5622 5.1209 20 14 -6.4508 0.4078 6.5908 21 1 -6.8417 1.3692 7.6530 22 1 -7.3347 0.5873 5.4111 23 1 -6.5858 -0.9790 7.1042 24 7 0.5389 -0.5918 5.4044 25 6 2.0400 -0.7212 -1.2492 26 6 1.6353 0.0689 -2.4953 27 9 3.4343 -0.8215 -1.1931 28 9 1.4822 -2.0028 -1.3081 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.1493 0.5390 2.5436 33 1 3.2846 -0.9410 3.6510 34 1 1.8310 -1.9682 3.6506 35 1 2.5607 3.2560 6.6663 36 1 0.4238 1.5414 7.9430 37 1 -1.2830 -0.1641 8.1330 38 1 -1.3832 -1.4910 6.9508 39 1 -2.1459 0.9053 5.6654 40 1 -5.1244 2.0241 4.6636 41 1 2.0699 1.0675 -2.4494 42 1 1.9983 -0.4452 -3.3853 43 1 0.5490 0.1471 -2.5389 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691910755.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:51:03 Heat of formation + Delta-G solvation = -115.639936 kcal Electronic energy + Delta-G solvation = -29930.451424 eV Core-core repulsion = 25261.557637 eV Total energy + Delta-G solvation = -4668.893788 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.145 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.00446 -46.97509 -41.31075 -39.85830 -37.83902 -35.75269 -35.02037 -34.66874 -33.17413 -31.87270 -30.75323 -30.12272 -27.58523 -26.62125 -25.65810 -23.56284 -23.09822 -22.11973 -21.48811 -20.37286 -18.92582 -18.07666 -17.71322 -17.66535 -17.31376 -17.00832 -16.09214 -15.86191 -15.78812 -15.43053 -15.35664 -14.90738 -14.41817 -13.99664 -13.93906 -13.81243 -13.50517 -13.40765 -13.25420 -13.18457 -13.03919 -12.98591 -12.74866 -12.70115 -12.34930 -12.23274 -12.14661 -11.96151 -11.90908 -11.11232 -11.04036 -10.91351 -10.69992 -10.44802 -10.20248 -10.06951 -9.87379 -9.46439 -9.27935 -9.25344 -9.04541 -7.12426 -5.90846 -3.21767 0.70452 0.94507 2.42306 2.73691 3.22029 3.36055 3.41831 3.43257 3.46656 3.63526 3.78650 3.83756 4.13701 4.17546 4.28742 4.51376 4.61157 4.73094 4.77023 4.84064 5.06286 5.13883 5.24254 5.29141 5.31546 5.37502 5.39151 5.42711 5.53743 5.56661 5.67405 5.87858 5.89476 6.10518 6.15393 6.30187 6.41614 6.96049 7.21270 7.23660 7.56800 7.96981 8.04345 8.25170 9.37888 9.87777 10.23715 11.31616 Molecular weight = 344.14amu Principal moments of inertia in cm(-1) A = 0.008768 B = 0.003009 C = 0.002392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3192.687446 B = 9304.361481 C =11702.217710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.155 4.155 3 H 0.125 0.875 4 C 0.523 3.477 5 O -0.521 6.521 6 N -0.715 5.715 7 C 0.197 3.803 8 C 0.315 3.685 9 N -0.532 5.532 10 C 0.354 3.646 11 O -0.477 6.477 12 C -0.217 4.217 13 C 0.200 3.800 14 C 0.195 3.805 15 N -0.721 5.721 16 C -0.244 4.244 17 H 0.075 0.925 18 C -0.009 4.009 19 N -0.932 5.932 20 Si 0.911 3.089 21 H -0.289 1.289 22 H -0.290 1.290 23 H -0.280 1.280 24 N -0.491 5.491 25 C 0.309 3.691 26 C -0.197 4.197 27 F -0.192 7.192 28 F -0.191 7.191 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.404 0.596 33 H 0.095 0.905 34 H 0.099 0.901 35 H 0.407 0.593 36 H 0.157 0.843 37 H 0.045 0.955 38 H 0.049 0.951 39 H 0.385 0.615 40 H 0.256 0.744 41 H 0.089 0.911 42 H 0.084 0.916 43 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.623 2.580 -9.264 16.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.177 4.177 3 H 0.143 0.857 4 C 0.308 3.692 5 O -0.396 6.396 6 N -0.368 5.368 7 C 0.072 3.928 8 C 0.046 3.954 9 N -0.258 5.258 10 C 0.167 3.833 11 O -0.284 6.284 12 C -0.241 4.241 13 C 0.055 3.945 14 C 0.068 3.932 15 N -0.367 5.367 16 C -0.375 4.375 17 H 0.093 0.907 18 C -0.205 4.205 19 N -0.579 5.579 20 Si 0.742 3.258 21 H -0.216 1.216 22 H -0.217 1.217 23 H -0.206 1.206 24 N -0.207 5.207 25 C 0.273 3.727 26 C -0.254 4.254 27 F -0.173 7.173 28 F -0.172 7.172 29 H 0.098 0.902 30 H 0.096 0.904 31 H 0.094 0.906 32 H 0.239 0.761 33 H 0.114 0.886 34 H 0.117 0.883 35 H 0.266 0.734 36 H 0.174 0.826 37 H 0.063 0.937 38 H 0.067 0.933 39 H 0.218 0.782 40 H 0.066 0.934 41 H 0.108 0.892 42 H 0.103 0.897 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 14.593 0.890 -9.657 17.521 hybrid contribution -1.489 1.400 0.735 2.172 sum 13.104 2.290 -8.921 16.017 Atomic orbital electron populations 1.21875 0.89900 1.04688 1.04340 1.22477 1.00561 1.02326 0.92386 0.85673 1.20085 0.80363 0.84728 0.84043 1.90792 1.36982 1.25440 1.86375 1.45699 1.54016 1.32358 1.04738 1.19863 0.99685 0.95403 0.77827 1.22704 0.87033 0.89987 0.95701 1.67669 1.36194 1.10100 1.11871 1.19368 0.86525 0.89635 0.87808 1.84703 1.62388 1.18143 1.63164 1.22985 0.94725 1.01605 1.04781 1.22196 0.95917 0.88115 0.88245 1.19732 0.81451 0.97297 0.94747 1.42146 1.00845 1.51338 1.42330 1.19211 0.82356 1.20923 1.14979 0.90737 1.24756 0.98149 0.99276 0.98328 1.69660 1.31537 1.31154 1.25588 0.86131 0.84456 0.77840 0.77381 1.21585 1.21665 1.20561 1.68198 1.12836 1.28597 1.11078 1.20614 0.75268 0.80746 0.96116 1.22847 1.04832 1.01575 0.96157 1.93044 1.30353 1.96449 1.97416 1.93030 1.84880 1.41956 1.97330 0.90202 0.90354 0.90554 0.76104 0.88648 0.88265 0.73374 0.82572 0.93728 0.93339 0.78180 0.93378 0.89165 0.89683 0.88788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 8.68 37.16 0.32 -0.97 16 2 C -0.16 -1.48 2.41 -91.77 -0.22 -1.70 16 3 H 0.13 0.83 8.14 -51.93 -0.42 0.41 16 4 C 0.52 6.83 6.93 -10.98 -0.08 6.75 16 5 O -0.52 -8.77 14.82 5.56 0.08 -8.68 16 6 N -0.72 -8.70 5.44 -61.48 -0.33 -9.03 16 7 C 0.20 2.62 6.10 -5.20 -0.03 2.59 16 8 C 0.31 4.67 7.01 -157.23 -1.10 3.56 16 9 N -0.53 -7.74 10.36 -10.78 -0.11 -7.85 16 10 C 0.35 4.84 7.83 -16.69 -0.13 4.71 16 11 O -0.48 -5.27 13.57 -18.21 -0.25 -5.52 16 12 C -0.22 -3.11 9.79 -39.16 -0.38 -3.49 16 13 C 0.20 3.36 6.18 -82.32 -0.51 2.85 16 14 C 0.20 3.71 6.61 -5.20 -0.03 3.68 16 15 N -0.72 -17.23 5.59 -61.08 -0.34 -17.57 16 16 C -0.24 -6.46 9.99 -15.06 -0.15 -6.61 16 17 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 18 C -0.01 -0.24 5.50 -17.43 -0.10 -0.33 16 19 N -0.93 -26.73 13.06 55.49 0.72 -26.01 16 20 Si 0.91 21.42 29.55 -169.99 -5.02 16.40 16 21 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 22 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 23 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 24 N -0.49 -8.24 10.27 -7.06 -0.07 -8.31 16 25 C 0.31 3.29 1.50 -26.73 -0.04 3.25 16 26 C -0.20 -1.26 9.14 37.16 0.34 -0.92 16 27 F -0.19 -2.54 15.82 2.25 0.04 -2.51 16 28 F -0.19 -2.56 15.75 2.25 0.04 -2.53 16 29 H 0.08 0.69 7.56 -51.93 -0.39 0.30 16 30 H 0.08 0.48 6.56 -51.93 -0.34 0.14 16 31 H 0.08 0.78 7.68 -51.94 -0.40 0.38 16 32 H 0.40 4.42 7.88 -40.82 -0.32 4.10 16 33 H 0.10 1.23 8.14 -51.93 -0.42 0.80 16 34 H 0.10 1.37 8.14 -51.93 -0.42 0.94 16 35 H 0.41 2.45 9.06 45.56 0.41 2.86 16 36 H 0.16 1.96 8.06 -52.48 -0.42 1.54 16 37 H 0.05 0.79 8.06 -51.93 -0.42 0.37 16 38 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.38 9.78 7.66 -40.82 -0.31 9.47 16 40 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 41 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.09 0.47 6.57 -51.93 -0.34 0.13 16 LS Contribution 377.33 15.07 5.69 5.69 Total: -1.00 -34.80 377.33 -6.30 -41.10 By element: Atomic # 1 Polarization: 16.08 SS G_CDS: -4.62 Total: 11.46 kcal Atomic # 6 Polarization: 15.48 SS G_CDS: -2.11 Total: 13.36 kcal Atomic # 7 Polarization: -68.63 SS G_CDS: -0.14 Total: -68.77 kcal Atomic # 8 Polarization: -14.04 SS G_CDS: -0.16 Total: -14.20 kcal Atomic # 9 Polarization: -5.10 SS G_CDS: 0.07 Total: -5.03 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -34.80 -6.30 -41.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691910755.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.538 kcal (2) G-P(sol) polarization free energy of solvation -34.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds