Wall clock time and date at job start Wed Apr 1 2020 03:51:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09006 * 109.47050 * 2 1 4 4 C 1.50697 * 109.47257 * 119.99569 * 2 1 3 5 5 O 1.21280 * 119.99937 * 119.99916 * 4 2 1 6 6 N 1.34783 * 120.00199 * 300.00555 * 4 2 1 7 7 C 1.46490 * 119.99973 * 179.97438 * 6 4 2 8 8 C 1.50699 * 109.47167 * 179.97438 * 7 6 4 9 9 N 1.31790 * 119.09875 * 270.02191 * 8 7 6 10 10 C 1.32793 * 120.72305 * 179.97438 * 9 8 7 11 11 O 1.35506 * 120.51551 * 180.02562 * 10 9 8 12 12 C 1.39423 * 118.96901 * 359.75069 * 10 9 8 13 13 C 1.38181 * 118.35275 * 0.47061 * 12 10 9 14 14 C 1.50697 * 120.41367 * 179.80466 * 13 12 10 15 15 N 1.46499 * 109.47276 * 94.71971 * 14 13 12 16 16 C 1.36935 * 119.99938 * 180.02562 * 15 14 13 17 17 H 1.08000 * 120.00518 * 359.72965 * 16 15 14 18 18 C 1.38817 * 119.99990 * 179.97438 * 16 15 14 19 19 N 1.31617 * 119.99869 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99909 * 179.97438 * 18 16 15 21 21 H 1.48508 * 109.46676 * 90.00727 * 20 18 16 22 22 H 1.48502 * 109.46977 * 210.00025 * 20 18 16 23 23 H 1.48494 * 109.47494 * 330.00753 * 20 18 16 24 24 N 1.31763 * 119.09108 * 90.00041 * 8 7 6 25 25 C 1.53001 * 109.47244 * 240.00045 * 2 1 3 26 26 C 1.52996 * 109.47289 * 65.00053 * 25 2 1 27 27 F 1.39900 * 109.46807 * 184.99781 * 25 2 1 28 28 F 1.39893 * 109.46800 * 304.99927 * 25 2 1 29 29 H 1.09001 * 109.47039 * 300.00208 * 1 2 3 30 30 H 1.09000 * 109.47196 * 60.00326 * 1 2 3 31 31 H 1.08989 * 109.46970 * 179.97438 * 1 2 3 32 32 H 0.96998 * 119.99587 * 359.97438 * 6 4 2 33 33 H 1.09004 * 109.47512 * 60.00127 * 7 6 4 34 34 H 1.08994 * 109.47511 * 300.00073 * 7 6 4 35 35 H 0.96696 * 114.00421 * 90.00139 * 11 10 9 36 36 H 1.08004 * 120.81818 * 180.27222 * 12 10 9 37 37 H 1.09004 * 109.47205 * 334.71946 * 14 13 12 38 38 H 1.09005 * 109.47240 * 214.72155 * 14 13 12 39 39 H 0.96999 * 119.99984 * 0.02562 * 15 14 13 40 40 H 0.96996 * 119.99743 * 179.97438 * 19 18 16 41 41 H 1.09005 * 109.47184 * 59.99814 * 26 25 2 42 42 H 1.09001 * 109.47159 * 180.02562 * 26 25 2 43 43 H 1.09005 * 109.46757 * 300.00263 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 8 2.7296 -1.6964 1.1193 6 7 1.7067 -0.2498 2.4546 7 6 2.1946 -0.9407 3.6507 8 6 1.6928 -0.2299 4.8812 9 7 2.4199 0.7369 5.4042 10 6 2.0084 1.3851 6.4877 11 8 2.7592 2.3789 7.0216 12 6 0.7892 1.0311 7.0640 13 6 0.0621 0.0086 6.4853 14 6 -1.2596 -0.4149 7.0725 15 7 -2.3469 0.2828 6.3817 16 6 -3.6470 0.0561 6.7470 17 1 -3.8711 -0.6402 7.5416 18 6 -4.6772 0.7176 6.0928 19 7 -4.4044 1.5622 5.1209 20 14 -6.4508 0.4078 6.5908 21 1 -6.8417 1.3692 7.6530 22 1 -7.3347 0.5873 5.4111 23 1 -6.5858 -0.9790 7.1042 24 7 0.5389 -0.5918 5.4044 25 6 2.0400 -0.7212 -1.2492 26 6 1.6353 0.0689 -2.4953 27 9 3.4343 -0.8215 -1.1931 28 9 1.4822 -2.0028 -1.3081 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.1493 0.5390 2.5436 33 1 3.2846 -0.9410 3.6510 34 1 1.8310 -1.9682 3.6506 35 1 2.5607 3.2560 6.6663 36 1 0.4238 1.5414 7.9430 37 1 -1.2830 -0.1641 8.1330 38 1 -1.3832 -1.4910 6.9508 39 1 -2.1459 0.9053 5.6654 40 1 -5.1244 2.0241 4.6636 41 1 2.0699 1.0675 -2.4494 42 1 1.9983 -0.4452 -3.3853 43 1 0.5490 0.1471 -2.5389 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691910755.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:51:03 Heat of formation + Delta-G solvation = -144.820334 kcal Electronic energy + Delta-G solvation = -29931.716781 eV Core-core repulsion = 25261.557637 eV Total energy + Delta-G solvation = -4670.159145 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.145 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -49.89867 -47.90254 -42.47220 -40.90597 -38.83427 -37.19573 -36.03371 -35.78311 -34.63155 -33.15530 -32.36334 -30.83828 -28.67335 -28.20475 -26.41189 -25.23772 -24.27060 -23.21716 -22.68545 -21.31101 -19.98951 -19.44754 -18.94845 -18.69376 -18.53352 -17.93645 -17.12370 -16.91442 -16.79189 -16.65967 -16.45238 -16.41199 -15.70189 -15.40191 -15.21897 -14.87560 -14.79847 -14.44971 -14.31005 -14.23529 -14.13192 -13.99248 -13.67732 -13.56377 -13.52528 -13.17730 -13.00154 -12.95568 -12.90631 -12.75769 -12.68075 -12.12225 -11.97544 -11.84114 -11.78776 -11.53310 -11.10785 -11.00225 -10.61435 -10.44420 -10.35155 -9.06807 -7.96143 -5.26606 -0.43312 -0.23281 1.41143 1.51367 1.52262 1.60525 1.73836 2.20542 2.45955 2.57706 2.68133 2.70527 3.10698 3.12494 3.35278 3.39213 3.40972 3.74356 3.85943 3.88124 4.05263 4.08806 4.11795 4.16452 4.20481 4.43317 4.52391 4.60765 4.69393 4.73519 4.79068 4.79087 4.87916 5.03481 5.07073 5.11059 5.23197 5.50563 5.79551 6.22673 6.23342 6.46084 6.86737 6.96616 7.31734 7.97153 8.23734 9.26965 Molecular weight = 344.14amu Principal moments of inertia in cm(-1) A = 0.008768 B = 0.003009 C = 0.002392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3192.687446 B = 9304.361481 C =11702.217710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.148 4.148 3 H 0.161 0.839 4 C 0.517 3.483 5 O -0.565 6.565 6 N -0.707 5.707 7 C 0.201 3.799 8 C 0.318 3.682 9 N -0.536 5.536 10 C 0.365 3.635 11 O -0.474 6.474 12 C -0.210 4.210 13 C 0.184 3.816 14 C 0.197 3.803 15 N -0.732 5.732 16 C -0.247 4.247 17 H 0.082 0.918 18 C -0.067 4.067 19 N -0.965 5.965 20 Si 0.973 3.027 21 H -0.285 1.285 22 H -0.297 1.297 23 H -0.271 1.271 24 N -0.515 5.515 25 C 0.292 3.708 26 C -0.189 4.189 27 F -0.211 7.211 28 F -0.214 7.214 29 H 0.078 0.922 30 H 0.109 0.891 31 H 0.053 0.947 32 H 0.412 0.588 33 H 0.100 0.900 34 H 0.089 0.911 35 H 0.431 0.569 36 H 0.175 0.825 37 H 0.065 0.935 38 H 0.041 0.959 39 H 0.374 0.626 40 H 0.252 0.748 41 H 0.114 0.886 42 H 0.086 0.914 43 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.676 4.135 -9.079 16.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.170 4.170 3 H 0.179 0.821 4 C 0.304 3.696 5 O -0.443 6.443 6 N -0.360 5.360 7 C 0.075 3.925 8 C 0.049 3.951 9 N -0.262 5.262 10 C 0.177 3.823 11 O -0.285 6.285 12 C -0.234 4.234 13 C 0.040 3.960 14 C 0.071 3.929 15 N -0.375 5.375 16 C -0.378 4.378 17 H 0.099 0.901 18 C -0.260 4.260 19 N -0.615 5.615 20 Si 0.802 3.198 21 H -0.212 1.212 22 H -0.223 1.223 23 H -0.196 1.196 24 N -0.232 5.232 25 C 0.256 3.744 26 C -0.246 4.246 27 F -0.192 7.192 28 F -0.195 7.195 29 H 0.097 0.903 30 H 0.128 0.872 31 H 0.072 0.928 32 H 0.248 0.752 33 H 0.118 0.882 34 H 0.107 0.893 35 H 0.294 0.706 36 H 0.193 0.807 37 H 0.082 0.918 38 H 0.059 0.941 39 H 0.206 0.794 40 H 0.061 0.939 41 H 0.132 0.868 42 H 0.105 0.895 43 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 14.651 2.463 -9.436 17.600 hybrid contribution -1.377 0.925 0.751 1.821 sum 13.274 3.388 -8.685 16.221 Atomic orbital electron populations 1.21893 0.89009 1.03724 1.05865 1.22581 1.01056 1.03427 0.89920 0.82105 1.20797 0.79517 0.84276 0.85038 1.90769 1.39087 1.27466 1.87006 1.45664 1.53692 1.32308 1.04349 1.19781 0.99807 0.94940 0.77947 1.22777 0.86508 0.90015 0.95826 1.67750 1.36078 1.10065 1.12288 1.19423 0.86149 0.89754 0.86984 1.84671 1.61685 1.19057 1.63066 1.23084 0.94696 1.00570 1.05059 1.21887 0.95562 0.89534 0.89030 1.19755 0.81473 0.96323 0.95361 1.42258 1.01365 1.51553 1.42369 1.19607 0.83651 1.20088 1.14489 0.90054 1.25518 1.01856 0.99742 0.98845 1.69798 1.32234 1.32511 1.26966 0.85151 0.79902 0.78040 0.76680 1.21168 1.22349 1.19584 1.68118 1.13891 1.29538 1.11633 1.21319 0.74239 0.80308 0.98581 1.22883 1.06067 1.01917 0.93722 1.92999 1.32083 1.96521 1.97640 1.92982 1.85113 1.43840 1.97541 0.90305 0.87197 0.92756 0.75244 0.88242 0.89266 0.70557 0.80727 0.91751 0.94144 0.79418 0.93891 0.86750 0.89512 0.87069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.32 8.68 71.98 0.62 -1.70 16 2 C -0.15 -2.63 2.41 -11.54 -0.03 -2.66 16 3 H 0.16 1.67 8.14 -2.38 -0.02 1.65 16 4 C 0.52 13.52 6.93 87.66 0.61 14.13 16 5 O -0.57 -19.64 14.82 -3.03 -0.04 -19.68 16 6 N -0.71 -17.09 5.44 -466.81 -2.54 -19.63 16 7 C 0.20 5.38 6.10 85.63 0.52 5.90 16 8 C 0.32 9.27 7.01 138.76 0.97 10.24 16 9 N -0.54 -14.79 10.36 -300.70 -3.12 -17.90 16 10 C 0.37 9.19 7.83 84.83 0.66 9.85 16 11 O -0.47 -9.05 13.57 -88.08 -1.20 -10.25 16 12 C -0.21 -5.64 9.79 22.54 0.22 -5.42 16 13 C 0.18 6.04 6.18 42.44 0.26 6.30 16 14 C 0.20 7.40 6.61 85.63 0.57 7.96 16 15 N -0.73 -34.86 5.59 -347.17 -1.94 -36.80 16 16 C -0.25 -12.97 9.99 84.04 0.84 -12.13 16 17 H 0.08 4.06 7.83 -2.91 -0.02 4.04 16 18 C -0.07 -3.63 5.50 84.86 0.47 -3.16 16 19 N -0.97 -55.71 13.06 21.65 0.28 -55.42 16 20 Si 0.97 43.83 29.55 68.60 2.03 45.85 16 21 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 22 H -0.30 -13.56 7.11 99.48 0.71 -12.85 16 23 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 24 N -0.51 -17.24 10.27 -176.24 -1.81 -19.05 16 25 C 0.29 5.99 1.50 30.59 0.05 6.03 16 26 C -0.19 -1.97 9.14 71.98 0.66 -1.31 16 27 F -0.21 -5.60 15.82 44.97 0.71 -4.89 16 28 F -0.21 -5.84 15.75 44.97 0.71 -5.13 16 29 H 0.08 1.27 7.56 -2.39 -0.02 1.25 16 30 H 0.11 1.02 6.56 -2.39 -0.02 1.01 16 31 H 0.05 1.10 7.68 -2.39 -0.02 1.08 16 32 H 0.41 8.72 7.88 -92.71 -0.73 7.99 16 33 H 0.10 2.58 8.14 -2.39 -0.02 2.56 16 34 H 0.09 2.57 8.14 -2.39 -0.02 2.55 16 35 H 0.43 3.74 9.06 -74.06 -0.67 3.06 16 36 H 0.18 3.95 8.06 -2.91 -0.02 3.92 16 37 H 0.06 2.17 8.06 -2.38 -0.02 2.15 16 38 H 0.04 1.58 8.14 -2.38 -0.02 1.56 16 39 H 0.37 19.15 7.66 -92.71 -0.71 18.44 16 40 H 0.25 14.13 8.31 -92.71 -0.77 13.36 16 41 H 0.11 0.65 8.14 -2.38 -0.02 0.63 16 42 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 43 H 0.11 0.77 6.57 -2.38 -0.02 0.76 16 Total: -1.00 -76.06 377.33 -1.51 -77.57 By element: Atomic # 1 Polarization: 32.31 SS G_CDS: -1.01 Total: 31.30 kcal Atomic # 6 Polarization: 27.61 SS G_CDS: 6.42 Total: 34.04 kcal Atomic # 7 Polarization: -139.68 SS G_CDS: -9.12 Total: -148.80 kcal Atomic # 8 Polarization: -28.69 SS G_CDS: -1.24 Total: -29.94 kcal Atomic # 9 Polarization: -11.44 SS G_CDS: 1.42 Total: -10.02 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.85 kcal Total: -76.06 -1.51 -77.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691910755.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.250 kcal (2) G-P(sol) polarization free energy of solvation -76.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds