Wall clock time and date at job start Wed Apr 1 2020 02:50:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47206 * 2 1 4 4 C 1.52999 * 109.47132 * 239.99626 * 2 1 3 5 5 C 1.53001 * 109.47129 * 175.00035 * 4 2 1 6 6 C 1.53006 * 109.46954 * 180.02562 * 5 4 2 7 7 N 1.46505 * 109.46691 * 179.97438 * 6 5 4 8 8 C 1.36936 * 119.99442 * 180.02562 * 7 6 5 9 9 H 1.07995 * 120.00449 * 359.97438 * 8 7 6 10 10 C 1.38810 * 119.99595 * 180.02562 * 8 7 6 11 11 N 1.31614 * 120.00256 * 359.97438 * 10 8 7 12 12 Si 1.86805 * 120.00034 * 179.97438 * 10 8 7 13 13 H 1.48502 * 109.47170 * 89.99271 * 12 10 8 14 14 H 1.48489 * 109.47285 * 209.99355 * 12 10 8 15 15 H 1.48500 * 109.46842 * 329.99517 * 12 10 8 16 16 N 1.46500 * 109.47118 * 119.99931 * 2 1 3 17 17 C 1.34779 * 120.00307 * 275.00233 * 16 2 1 18 18 O 1.21609 * 119.99773 * 359.97438 * 17 16 2 19 19 C 1.47328 * 120.00219 * 180.02562 * 17 16 2 20 20 C 1.35393 * 118.73416 * 179.72932 * 19 17 16 21 21 C 1.46489 * 119.22671 * 180.27927 * 20 19 17 22 22 C 1.39406 * 122.08924 * 179.97438 * 21 20 19 23 23 C 1.37926 * 119.48789 * 179.97438 * 22 21 20 24 24 C 1.38760 * 120.70878 * 0.04902 * 23 22 21 25 25 C 1.37998 * 120.73905 * 359.97438 * 24 23 22 26 26 C 1.39149 * 119.53816 * 359.97438 * 25 24 23 27 27 C 1.47047 * 122.06652 * 180.02562 * 26 25 24 28 28 O 1.21623 * 120.34397 * 359.94729 * 27 26 25 29 29 O 1.34405 * 119.31352 * 179.97438 * 27 26 25 30 30 H 1.09000 * 109.47122 * 300.00254 * 1 2 3 31 31 H 1.08994 * 109.47180 * 59.99878 * 1 2 3 32 32 H 1.09000 * 109.47206 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47190 * 295.00064 * 4 2 1 34 34 H 1.08999 * 109.46568 * 55.00239 * 4 2 1 35 35 H 1.08998 * 109.47108 * 300.00079 * 5 4 2 36 36 H 1.08999 * 109.47229 * 60.00608 * 5 4 2 37 37 H 1.08998 * 109.47101 * 299.99867 * 6 5 4 38 38 H 1.08999 * 109.46832 * 60.00150 * 6 5 4 39 39 H 0.96999 * 119.99713 * 0.02562 * 7 6 5 40 40 H 0.97005 * 120.00348 * 180.02562 * 11 10 8 41 41 H 0.97003 * 120.00281 * 94.99674 * 16 2 1 42 42 H 1.08002 * 120.39167 * 0.29954 * 20 19 17 43 43 H 1.07992 * 120.25768 * 0.02562 * 22 21 20 44 44 H 1.08000 * 119.63913 * 180.02562 * 23 22 21 45 45 H 1.07998 * 119.63209 * 179.97438 * 24 23 22 46 46 H 1.08003 * 120.22779 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5648 -0.6134 -1.3136 6 6 4.0747 -1.3342 -2.5632 7 7 5.5348 -1.2303 -2.6252 8 6 6.2184 -1.8036 -3.6640 9 1 5.6814 -2.3327 -4.4373 10 6 7.6018 -1.7056 -3.7225 11 7 8.2564 -1.0612 -2.7798 12 14 8.5346 -2.4883 -5.1391 13 1 8.6665 -1.5078 -6.2467 14 1 9.8850 -2.8973 -4.6767 15 1 7.7935 -3.6818 -5.6203 16 7 2.0183 -0.6906 1.1962 17 6 2.1470 -0.0183 2.3572 18 8 1.8582 1.1618 2.4117 19 6 2.6386 -0.7127 3.5600 20 6 2.7633 -0.0112 4.7113 21 6 3.2570 -0.6894 5.9122 22 6 3.4089 -0.0250 7.1283 23 6 3.8779 -0.7164 8.2257 24 6 4.1999 -2.0628 8.1305 25 6 4.0573 -2.7393 6.9362 26 6 3.5849 -2.0620 5.8162 27 6 3.4111 -2.7280 4.5168 28 8 3.6823 -3.9068 4.3894 29 8 2.9500 -2.0205 3.4712 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.7516 -1.7716 -1.2055 34 1 1.6054 -0.2618 -2.1369 35 1 3.8532 0.4369 -1.3573 36 1 3.9995 -1.0729 -0.4259 37 1 3.7864 -2.3844 -2.5199 38 1 3.6401 -0.8743 -3.4507 39 1 6.0171 -0.7554 -1.9304 40 1 9.2231 -0.9924 -2.8209 41 1 2.2490 -1.6318 1.1527 42 1 2.5015 1.0361 4.7441 43 1 3.1605 1.0227 7.2107 44 1 3.9962 -0.2042 9.1692 45 1 4.5661 -2.5871 9.0007 46 1 4.3108 -3.7872 6.8712 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725392177.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:50:22 Heat of formation + Delta-G solvation = -65.868820 kcal Electronic energy + Delta-G solvation = -28819.028430 eV Core-core repulsion = 24674.229659 eV Total energy + Delta-G solvation = -4144.798771 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.11448 -40.11747 -39.10728 -38.14257 -36.94359 -34.90389 -33.68834 -32.69007 -31.86271 -31.39804 -30.22012 -29.34777 -25.87940 -25.45389 -25.09254 -23.14535 -22.68601 -22.03000 -20.85581 -20.75091 -19.47441 -19.10652 -18.10087 -17.14141 -16.99319 -16.81171 -16.48891 -15.89707 -15.23772 -15.06985 -14.98336 -14.66977 -14.62083 -14.32526 -13.97648 -13.80284 -13.56229 -13.49114 -13.29900 -13.11889 -12.98177 -12.70172 -12.43292 -12.25781 -12.11062 -11.79763 -11.33417 -11.22262 -11.04828 -10.82972 -10.80295 -10.62542 -10.47427 -10.41117 -10.23945 -9.98979 -9.69929 -9.66726 -9.33311 -8.83401 -8.65542 -6.87960 -5.72532 -3.01182 -0.19689 0.24031 1.29079 1.82900 2.02082 2.71501 2.78369 3.33547 3.46266 3.46568 3.50891 3.53071 3.97765 4.10490 4.30920 4.49494 4.58169 4.62609 4.65021 4.73346 4.96172 5.02539 5.09959 5.10870 5.23923 5.36617 5.39976 5.50421 5.59052 5.60665 5.68625 5.72339 5.75634 5.80478 5.91298 6.02514 6.06117 6.18825 6.19620 6.30783 6.36431 6.43031 6.68514 6.88766 6.92314 6.97621 7.24160 7.73248 7.78155 8.46484 9.57221 10.16343 10.50590 11.50514 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.009995 B = 0.002410 C = 0.002084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2800.747958 B =11617.402825 C =13432.839801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.139 3.861 3 H 0.094 0.906 4 C -0.124 4.124 5 C -0.127 4.127 6 C 0.153 3.847 7 N -0.735 5.735 8 C -0.239 4.239 9 H 0.070 0.930 10 C -0.016 4.016 11 N -0.934 5.934 12 Si 0.907 3.093 13 H -0.290 1.290 14 H -0.291 1.291 15 H -0.282 1.282 16 N -0.700 5.700 17 C 0.577 3.423 18 O -0.516 6.516 19 C 0.055 3.945 20 C -0.126 4.126 21 C -0.013 4.013 22 C -0.107 4.107 23 C -0.080 4.080 24 C -0.125 4.125 25 C -0.044 4.044 26 C -0.171 4.171 27 C 0.527 3.473 28 O -0.443 6.443 29 O -0.269 6.269 30 H 0.059 0.941 31 H 0.069 0.931 32 H 0.058 0.942 33 H 0.070 0.930 34 H 0.082 0.918 35 H 0.063 0.937 36 H 0.061 0.939 37 H 0.017 0.983 38 H 0.018 0.982 39 H 0.383 0.617 40 H 0.255 0.745 41 H 0.411 0.589 42 H 0.172 0.828 43 H 0.141 0.859 44 H 0.136 0.864 45 H 0.136 0.864 46 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.625 2.383 24.075 29.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.035 3.965 3 H 0.112 0.888 4 C -0.162 4.162 5 C -0.165 4.165 6 C 0.025 3.975 7 N -0.379 5.379 8 C -0.370 4.370 9 H 0.088 0.912 10 C -0.212 4.212 11 N -0.583 5.583 12 Si 0.739 3.261 13 H -0.217 1.217 14 H -0.218 1.218 15 H -0.208 1.208 16 N -0.351 5.351 17 C 0.361 3.639 18 O -0.394 6.394 19 C 0.008 3.992 20 C -0.146 4.146 21 C -0.014 4.014 22 C -0.125 4.125 23 C -0.098 4.098 24 C -0.143 4.143 25 C -0.062 4.062 26 C -0.173 4.173 27 C 0.372 3.628 28 O -0.328 6.328 29 O -0.181 6.181 30 H 0.078 0.922 31 H 0.088 0.912 32 H 0.077 0.923 33 H 0.088 0.912 34 H 0.101 0.899 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.035 0.965 38 H 0.035 0.965 39 H 0.217 0.783 40 H 0.065 0.935 41 H 0.247 0.753 42 H 0.189 0.811 43 H 0.159 0.841 44 H 0.154 0.846 45 H 0.154 0.846 46 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -16.693 2.438 23.650 29.051 hybrid contribution 1.001 -0.696 -0.391 1.280 sum -15.692 1.742 23.259 28.112 Atomic orbital electron populations 1.22181 0.94952 1.02330 1.02659 1.21209 0.93943 0.97902 0.83451 0.88802 1.21869 0.97012 1.00973 0.96361 1.21755 0.93551 1.01513 0.99722 1.20645 0.86215 0.96502 0.94106 1.42380 1.00211 1.66293 1.28974 1.19242 0.89458 1.27106 1.01200 0.91200 1.24756 0.96460 1.01294 0.98658 1.69664 1.07175 1.47107 1.34343 0.86179 0.79388 0.78821 0.81760 1.21731 1.21768 1.20762 1.46082 1.65000 1.14825 1.09175 1.17322 0.78437 0.86056 0.82067 1.90875 1.50654 1.13986 1.83905 1.21436 1.01088 0.80538 0.96157 1.22365 1.00671 1.01856 0.89722 1.19019 0.96416 0.91909 0.94051 1.21222 0.99615 1.00579 0.91126 1.21455 0.95179 0.94355 0.98803 1.21342 1.00394 0.94763 0.97838 1.21150 0.93684 1.00625 0.90725 1.20245 1.07722 0.94547 0.94796 1.20339 0.74908 0.85687 0.81869 1.90968 1.45915 1.12987 1.82888 1.83343 1.70442 1.21846 1.42484 0.92204 0.91157 0.92282 0.91167 0.89914 0.91856 0.92018 0.96503 0.96458 0.78346 0.93542 0.75288 0.81093 0.84079 0.84649 0.84568 0.83844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.50 9.48 37.16 0.35 -1.15 16 2 C 0.14 1.52 2.57 -67.93 -0.17 1.34 16 3 H 0.09 1.16 7.58 -51.93 -0.39 0.76 16 4 C -0.12 -1.44 4.75 -26.73 -0.13 -1.57 16 5 C -0.13 -2.04 5.22 -26.73 -0.14 -2.18 16 6 C 0.15 3.12 6.26 -4.04 -0.03 3.10 16 7 N -0.73 -19.38 5.60 -59.91 -0.34 -19.71 16 8 C -0.24 -6.92 9.99 -15.06 -0.15 -7.07 16 9 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 10 C -0.02 -0.47 5.50 -17.43 -0.10 -0.57 16 11 N -0.93 -29.11 13.06 55.49 0.72 -28.39 16 12 Si 0.91 22.97 29.55 -169.99 -5.02 17.94 16 13 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 14 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 15 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 16 N -0.70 -7.94 4.52 -54.91 -0.25 -8.18 16 17 C 0.58 7.06 7.73 -12.56 -0.10 6.96 16 18 O -0.52 -7.28 15.82 5.27 0.08 -7.20 16 19 C 0.06 0.62 6.86 -36.90 -0.25 0.37 16 20 C -0.13 -1.19 9.52 -37.27 -0.35 -1.54 16 21 C -0.01 -0.12 5.89 -104.92 -0.62 -0.74 16 22 C -0.11 -0.68 9.88 -39.26 -0.39 -1.06 16 23 C -0.08 -0.41 10.01 -39.50 -0.40 -0.81 16 24 C -0.13 -0.73 10.02 -39.48 -0.40 -1.12 16 25 C -0.04 -0.36 9.66 -39.33 -0.38 -0.74 16 26 C -0.17 -1.76 5.90 -104.76 -0.62 -2.38 16 27 C 0.53 6.73 8.19 34.30 0.28 7.01 16 28 O -0.44 -6.74 17.39 -19.36 -0.34 -7.08 16 29 O -0.27 -3.34 8.98 -20.38 -0.18 -3.52 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 36 H 0.06 1.02 7.75 -51.93 -0.40 0.62 16 37 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 39 H 0.38 10.64 7.67 -40.82 -0.31 10.33 16 40 H 0.25 7.65 8.31 -40.82 -0.34 7.31 16 41 H 0.41 4.41 7.93 -40.82 -0.32 4.09 16 42 H 0.17 1.38 7.47 -52.49 -0.39 0.98 16 43 H 0.14 0.55 8.06 -52.49 -0.42 0.13 16 44 H 0.14 0.32 8.06 -52.49 -0.42 -0.10 16 45 H 0.14 0.44 8.06 -52.49 -0.42 0.02 16 46 H 0.14 1.09 7.80 -52.48 -0.41 0.68 16 LS Contribution 395.32 15.07 5.96 5.96 Total: -1.00 -35.28 395.32 -9.37 -44.65 By element: Atomic # 1 Polarization: 14.10 SS G_CDS: -6.43 Total: 7.67 kcal Atomic # 6 Polarization: 1.44 SS G_CDS: -3.58 Total: -2.14 kcal Atomic # 7 Polarization: -56.42 SS G_CDS: 0.14 Total: -56.28 kcal Atomic # 8 Polarization: -17.36 SS G_CDS: -0.44 Total: -17.80 kcal Atomic # 14 Polarization: 22.97 SS G_CDS: -5.02 Total: 17.94 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -35.28 -9.37 -44.65 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725392177.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.221 kcal (2) G-P(sol) polarization free energy of solvation -35.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds