Wall clock time and date at job start Wed Apr 1 2020 02:50:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47206 * 2 1 4 4 C 1.52999 * 109.47132 * 239.99626 * 2 1 3 5 5 C 1.53001 * 109.47129 * 175.00035 * 4 2 1 6 6 C 1.53006 * 109.46954 * 180.02562 * 5 4 2 7 7 N 1.46505 * 109.46691 * 179.97438 * 6 5 4 8 8 C 1.36936 * 119.99442 * 180.02562 * 7 6 5 9 9 H 1.07995 * 120.00449 * 359.97438 * 8 7 6 10 10 C 1.38810 * 119.99595 * 180.02562 * 8 7 6 11 11 N 1.31614 * 120.00256 * 359.97438 * 10 8 7 12 12 Si 1.86805 * 120.00034 * 179.97438 * 10 8 7 13 13 H 1.48502 * 109.47170 * 89.99271 * 12 10 8 14 14 H 1.48489 * 109.47285 * 209.99355 * 12 10 8 15 15 H 1.48500 * 109.46842 * 329.99517 * 12 10 8 16 16 N 1.46500 * 109.47118 * 119.99931 * 2 1 3 17 17 C 1.34779 * 120.00307 * 275.00233 * 16 2 1 18 18 O 1.21609 * 119.99773 * 359.97438 * 17 16 2 19 19 C 1.47328 * 120.00219 * 180.02562 * 17 16 2 20 20 C 1.35393 * 118.73416 * 179.72932 * 19 17 16 21 21 C 1.46489 * 119.22671 * 180.27927 * 20 19 17 22 22 C 1.39406 * 122.08924 * 179.97438 * 21 20 19 23 23 C 1.37926 * 119.48789 * 179.97438 * 22 21 20 24 24 C 1.38760 * 120.70878 * 0.04902 * 23 22 21 25 25 C 1.37998 * 120.73905 * 359.97438 * 24 23 22 26 26 C 1.39149 * 119.53816 * 359.97438 * 25 24 23 27 27 C 1.47047 * 122.06652 * 180.02562 * 26 25 24 28 28 O 1.21623 * 120.34397 * 359.94729 * 27 26 25 29 29 O 1.34405 * 119.31352 * 179.97438 * 27 26 25 30 30 H 1.09000 * 109.47122 * 300.00254 * 1 2 3 31 31 H 1.08994 * 109.47180 * 59.99878 * 1 2 3 32 32 H 1.09000 * 109.47206 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47190 * 295.00064 * 4 2 1 34 34 H 1.08999 * 109.46568 * 55.00239 * 4 2 1 35 35 H 1.08998 * 109.47108 * 300.00079 * 5 4 2 36 36 H 1.08999 * 109.47229 * 60.00608 * 5 4 2 37 37 H 1.08998 * 109.47101 * 299.99867 * 6 5 4 38 38 H 1.08999 * 109.46832 * 60.00150 * 6 5 4 39 39 H 0.96999 * 119.99713 * 0.02562 * 7 6 5 40 40 H 0.97005 * 120.00348 * 180.02562 * 11 10 8 41 41 H 0.97003 * 120.00281 * 94.99674 * 16 2 1 42 42 H 1.08002 * 120.39167 * 0.29954 * 20 19 17 43 43 H 1.07992 * 120.25768 * 0.02562 * 22 21 20 44 44 H 1.08000 * 119.63913 * 180.02562 * 23 22 21 45 45 H 1.07998 * 119.63209 * 179.97438 * 24 23 22 46 46 H 1.08003 * 120.22779 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5648 -0.6134 -1.3136 6 6 4.0747 -1.3342 -2.5632 7 7 5.5348 -1.2303 -2.6252 8 6 6.2184 -1.8036 -3.6640 9 1 5.6814 -2.3327 -4.4373 10 6 7.6018 -1.7056 -3.7225 11 7 8.2564 -1.0612 -2.7798 12 14 8.5346 -2.4883 -5.1391 13 1 8.6665 -1.5078 -6.2467 14 1 9.8850 -2.8973 -4.6767 15 1 7.7935 -3.6818 -5.6203 16 7 2.0183 -0.6906 1.1962 17 6 2.1470 -0.0183 2.3572 18 8 1.8582 1.1618 2.4117 19 6 2.6386 -0.7127 3.5600 20 6 2.7633 -0.0112 4.7113 21 6 3.2570 -0.6894 5.9122 22 6 3.4089 -0.0250 7.1283 23 6 3.8779 -0.7164 8.2257 24 6 4.1999 -2.0628 8.1305 25 6 4.0573 -2.7393 6.9362 26 6 3.5849 -2.0620 5.8162 27 6 3.4111 -2.7280 4.5168 28 8 3.6823 -3.9068 4.3894 29 8 2.9500 -2.0205 3.4712 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.7516 -1.7716 -1.2055 34 1 1.6054 -0.2618 -2.1369 35 1 3.8532 0.4369 -1.3573 36 1 3.9995 -1.0729 -0.4259 37 1 3.7864 -2.3844 -2.5199 38 1 3.6401 -0.8743 -3.4507 39 1 6.0171 -0.7554 -1.9304 40 1 9.2231 -0.9924 -2.8209 41 1 2.2490 -1.6318 1.1527 42 1 2.5015 1.0361 4.7441 43 1 3.1605 1.0227 7.2107 44 1 3.9962 -0.2042 9.1692 45 1 4.5661 -2.5871 9.0007 46 1 4.3108 -3.7872 6.8712 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725392177.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:50:21 Heat of formation + Delta-G solvation = -87.708298 kcal Electronic energy + Delta-G solvation = -28819.975461 eV Core-core repulsion = 24674.229659 eV Total energy + Delta-G solvation = -4145.745802 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.95527 -41.04637 -39.74465 -39.12033 -38.07670 -36.60328 -34.43738 -34.21150 -32.80009 -32.43029 -31.29593 -30.57720 -27.27592 -26.38693 -25.83161 -24.81845 -23.48886 -22.95951 -22.32539 -21.71195 -20.22928 -19.89085 -19.14742 -18.93125 -18.06523 -17.64933 -17.40596 -16.69629 -16.57505 -16.18077 -15.95620 -15.75192 -15.59624 -15.40705 -15.26280 -15.07938 -14.76926 -14.46313 -14.21729 -14.03469 -13.98696 -13.80684 -13.47652 -13.21526 -13.04853 -12.97364 -12.78813 -12.42248 -12.35089 -12.27603 -12.09909 -11.98813 -11.87910 -11.71746 -11.52922 -11.29421 -11.18180 -10.95337 -10.28955 -10.26863 -9.36343 -9.03067 -7.97725 -5.27373 -0.91793 -0.42864 0.61487 0.96167 1.20580 1.44882 1.47623 1.56094 1.86575 1.92808 2.54047 2.68903 2.70529 3.23058 3.35810 3.49592 3.60231 3.74478 3.78991 3.94296 4.08145 4.15669 4.18018 4.25787 4.35032 4.39279 4.51310 4.55744 4.62590 4.64517 4.81542 4.84196 4.87066 4.88662 4.97119 5.07967 5.08627 5.23538 5.28343 5.30983 5.31289 5.40442 5.45573 5.48030 5.71432 5.81000 6.06037 6.24725 6.32964 6.85641 7.29946 8.06991 8.29179 9.26207 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.009995 B = 0.002410 C = 0.002084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2800.747958 B =11617.402825 C =13432.839801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.141 3.859 3 H 0.080 0.920 4 C -0.111 4.111 5 C -0.115 4.115 6 C 0.149 3.851 7 N -0.751 5.751 8 C -0.248 4.248 9 H 0.077 0.923 10 C -0.080 4.080 11 N -0.972 5.972 12 Si 0.977 3.023 13 H -0.284 1.284 14 H -0.295 1.295 15 H -0.268 1.268 16 N -0.700 5.700 17 C 0.578 3.422 18 O -0.541 6.541 19 C 0.020 3.980 20 C -0.097 4.097 21 C -0.035 4.035 22 C -0.099 4.099 23 C -0.070 4.070 24 C -0.113 4.113 25 C -0.061 4.061 26 C -0.192 4.192 27 C 0.520 3.480 28 O -0.486 6.486 29 O -0.281 6.281 30 H 0.051 0.949 31 H 0.085 0.915 32 H 0.068 0.932 33 H 0.083 0.917 34 H 0.099 0.901 35 H 0.053 0.947 36 H 0.050 0.950 37 H 0.021 0.979 38 H 0.025 0.975 39 H 0.371 0.629 40 H 0.251 0.749 41 H 0.413 0.587 42 H 0.187 0.813 43 H 0.171 0.829 44 H 0.175 0.825 45 H 0.168 0.832 46 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.594 3.031 25.684 31.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.037 3.963 3 H 0.098 0.902 4 C -0.149 4.149 5 C -0.153 4.153 6 C 0.023 3.977 7 N -0.394 5.394 8 C -0.379 4.379 9 H 0.095 0.905 10 C -0.272 4.272 11 N -0.623 5.623 12 Si 0.806 3.194 13 H -0.211 1.211 14 H -0.221 1.221 15 H -0.193 1.193 16 N -0.350 5.350 17 C 0.364 3.636 18 O -0.421 6.421 19 C -0.026 4.026 20 C -0.117 4.117 21 C -0.035 4.035 22 C -0.117 4.117 23 C -0.088 4.088 24 C -0.131 4.131 25 C -0.079 4.079 26 C -0.193 4.193 27 C 0.368 3.632 28 O -0.374 6.374 29 O -0.193 6.193 30 H 0.070 0.930 31 H 0.104 0.896 32 H 0.087 0.913 33 H 0.101 0.899 34 H 0.118 0.882 35 H 0.071 0.929 36 H 0.069 0.931 37 H 0.039 0.961 38 H 0.043 0.957 39 H 0.202 0.798 40 H 0.060 0.940 41 H 0.249 0.751 42 H 0.205 0.795 43 H 0.188 0.812 44 H 0.193 0.807 45 H 0.185 0.815 46 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -17.721 3.086 25.240 30.994 hybrid contribution 1.280 -0.851 -0.720 1.697 sum -16.442 2.235 24.520 29.607 Atomic orbital electron populations 1.22113 0.93071 1.03100 1.03033 1.21190 0.95300 0.96908 0.82879 0.90204 1.21785 0.93508 1.02179 0.97478 1.21613 0.96592 1.00005 0.97075 1.20864 0.83192 0.97264 0.96365 1.42663 1.02594 1.65992 1.28125 1.19686 0.90077 1.26482 1.01705 0.90466 1.25659 0.97538 1.02481 1.01537 1.69832 1.07089 1.48918 1.36461 0.85082 0.77584 0.78268 0.78494 1.21111 1.22133 1.19285 1.46137 1.64758 1.14899 1.09234 1.17422 0.77982 0.85804 0.82437 1.90846 1.52053 1.14780 1.84390 1.21345 1.04236 0.80390 0.96677 1.22675 0.97553 1.02180 0.89303 1.19164 0.97863 0.91488 0.95014 1.21653 0.98066 1.01906 0.90057 1.21963 0.92937 0.93964 0.99887 1.21769 0.98465 0.95294 0.97522 1.21329 0.94348 1.00891 0.91306 1.20266 1.09620 0.95460 0.93988 1.20839 0.74128 0.85462 0.82792 1.90919 1.48178 1.14605 1.83698 1.83237 1.70614 1.22548 1.42932 0.93016 0.89573 0.91295 0.89864 0.88212 0.92853 0.93146 0.96091 0.95733 0.79759 0.93979 0.75096 0.79546 0.81193 0.80721 0.81484 0.84190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.65 9.48 71.98 0.68 -1.96 16 2 C 0.14 3.03 2.57 44.99 0.12 3.14 16 3 H 0.08 1.97 7.58 -2.39 -0.02 1.96 16 4 C -0.11 -2.48 4.75 30.59 0.15 -2.33 16 5 C -0.11 -3.70 5.22 30.60 0.16 -3.54 16 6 C 0.15 6.09 6.26 86.38 0.54 6.63 16 7 N -0.75 -40.32 5.60 -343.44 -1.92 -42.25 16 8 C -0.25 -14.44 9.99 84.03 0.84 -13.60 16 9 H 0.08 4.29 7.83 -2.91 -0.02 4.26 16 10 C -0.08 -4.79 5.50 84.86 0.47 -4.32 16 11 N -0.97 -61.88 13.06 21.65 0.28 -61.60 16 12 Si 0.98 47.52 29.55 68.60 2.03 49.55 16 13 H -0.28 -13.46 7.11 99.48 0.71 -12.75 16 14 H -0.29 -14.38 7.11 99.48 0.71 -13.67 16 15 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 16 N -0.70 -16.32 4.52 -445.90 -2.02 -18.33 16 17 C 0.58 14.65 7.73 86.63 0.67 15.32 16 18 O -0.54 -15.53 15.82 -4.06 -0.06 -15.59 16 19 C 0.02 0.47 6.86 24.01 0.16 0.64 16 20 C -0.10 -1.81 9.52 23.76 0.23 -1.58 16 21 C -0.03 -0.59 5.89 -20.05 -0.12 -0.70 16 22 C -0.10 -0.92 9.88 22.48 0.22 -0.70 16 23 C -0.07 -0.42 10.01 22.32 0.22 -0.20 16 24 C -0.11 -0.97 10.02 22.34 0.22 -0.74 16 25 C -0.06 -0.97 9.66 22.43 0.22 -0.75 16 26 C -0.19 -4.02 5.90 -19.96 -0.12 -4.14 16 27 C 0.52 14.41 8.19 70.13 0.57 14.99 16 28 O -0.49 -16.18 17.39 19.44 0.34 -15.84 16 29 O -0.28 -7.57 8.98 15.80 0.14 -7.43 16 30 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 35 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 36 H 0.05 1.73 7.75 -2.39 -0.02 1.71 16 37 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 38 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.37 21.31 7.67 -92.71 -0.71 20.60 16 40 H 0.25 15.43 8.31 -92.70 -0.77 14.66 16 41 H 0.41 9.28 7.93 -92.71 -0.74 8.55 16 42 H 0.19 2.78 7.47 -2.91 -0.02 2.76 16 43 H 0.17 0.58 8.06 -2.91 -0.02 0.56 16 44 H 0.18 -0.23 8.06 -2.91 -0.02 -0.26 16 45 H 0.17 0.39 8.06 -2.91 -0.02 0.37 16 46 H 0.14 2.23 7.80 -2.91 -0.02 2.21 16 Total: -1.00 -79.21 395.32 3.60 -75.62 By element: Atomic # 1 Polarization: 30.14 SS G_CDS: -0.43 Total: 29.71 kcal Atomic # 6 Polarization: 0.92 SS G_CDS: 5.24 Total: 6.15 kcal Atomic # 7 Polarization: -118.52 SS G_CDS: -3.66 Total: -122.18 kcal Atomic # 8 Polarization: -39.27 SS G_CDS: 0.42 Total: -38.86 kcal Atomic # 14 Polarization: 47.52 SS G_CDS: 2.03 Total: 49.55 kcal Total: -79.21 3.60 -75.62 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725392177.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.089 kcal (2) G-P(sol) polarization free energy of solvation -79.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds