Wall clock time and date at job start Wed Apr 1 2020 03:53:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08992 * 109.47582 * 2 1 4 4 C 1.50704 * 109.46711 * 239.99259 * 2 1 3 5 5 O 1.21280 * 120.00013 * 341.18105 * 4 2 1 6 6 N 1.34783 * 119.99772 * 161.17572 * 4 2 1 7 7 C 1.46503 * 119.99568 * 354.04931 * 6 4 2 8 8 C 1.53003 * 109.47357 * 266.30351 * 7 6 4 9 9 N 1.46495 * 109.47084 * 180.02562 * 8 7 6 10 10 C 1.36940 * 119.99912 * 179.97438 * 9 8 7 11 11 H 1.07996 * 119.99669 * 0.02562 * 10 9 8 12 12 C 1.38806 * 120.00009 * 180.02562 * 10 9 8 13 13 N 1.31621 * 120.00104 * 0.02562 * 12 10 9 14 14 Si 1.86799 * 120.00158 * 180.02562 * 12 10 9 15 15 H 1.48502 * 109.47062 * 89.99936 * 14 12 10 16 16 H 1.48496 * 109.47213 * 209.99890 * 14 12 10 17 17 H 1.48503 * 109.47065 * 330.00174 * 14 12 10 18 18 C 1.46489 * 119.99756 * 174.05448 * 6 4 2 19 19 C 1.50701 * 109.47229 * 265.18164 * 18 6 4 20 20 C 1.38235 * 119.99703 * 91.35642 * 19 18 6 21 21 C 1.38244 * 119.99937 * 179.97438 * 20 19 18 22 22 C 1.38237 * 119.99951 * 0.07194 * 21 20 19 23 23 C 1.38236 * 119.99896 * 359.90849 * 22 21 20 24 24 C 1.38228 * 120.00257 * 271.34223 * 19 18 6 25 25 C 1.52998 * 109.46773 * 120.00137 * 2 1 3 26 26 F 1.39902 * 109.46901 * 173.84422 * 25 2 1 27 27 F 1.39906 * 109.47011 * 293.83811 * 25 2 1 28 28 F 1.39899 * 109.47442 * 53.84231 * 25 2 1 29 29 H 1.08996 * 109.47475 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46892 * 300.00522 * 1 2 3 31 31 H 1.09003 * 109.47077 * 60.00005 * 1 2 3 32 32 H 1.08996 * 109.47157 * 26.30779 * 7 6 4 33 33 H 1.09006 * 109.46496 * 146.30682 * 7 6 4 34 34 H 1.09001 * 109.46615 * 300.00828 * 8 7 6 35 35 H 1.08998 * 109.46697 * 60.00164 * 8 7 6 36 36 H 0.97000 * 119.99906 * 0.02562 * 9 8 7 37 37 H 0.96999 * 120.00162 * 180.02562 * 13 12 10 38 38 H 1.09004 * 109.47294 * 145.18452 * 18 6 4 39 39 H 1.08999 * 109.47928 * 25.18647 * 18 6 4 40 40 H 1.07994 * 120.00122 * 359.70647 * 20 19 18 41 41 H 1.08000 * 120.00081 * 179.97438 * 21 20 19 42 42 H 1.07993 * 120.00083 * 180.02562 * 22 21 20 43 43 H 1.08001 * 120.00043 * 180.02562 * 23 22 21 44 44 H 1.08000 * 119.99895 * 359.97438 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0322 -0.7106 -1.2304 5 8 1.2970 -1.4556 -1.8430 6 7 3.2985 -0.5180 -1.6501 7 6 4.1454 0.4785 -0.9898 8 6 4.0510 1.8073 -1.7425 9 7 4.8984 2.8035 -1.0826 10 6 4.9747 4.0763 -1.5821 11 1 4.4099 4.3456 -2.4623 12 6 5.7780 5.0201 -0.9572 13 7 6.4667 4.6917 0.1153 14 14 5.8816 6.7565 -1.6381 15 1 4.8317 7.5980 -1.0099 16 1 7.2191 7.3272 -1.3373 17 1 5.6763 6.7246 -3.1086 18 6 3.8278 -1.3051 -2.7665 19 6 4.5653 -2.5049 -2.2301 20 6 3.8966 -3.7000 -2.0419 21 6 4.5733 -4.8007 -1.5504 22 6 5.9183 -4.7059 -1.2458 23 6 6.5871 -3.5109 -1.4344 24 6 5.9106 -2.4104 -1.9267 25 6 2.0399 -0.7213 1.2492 26 9 3.4318 -0.8451 1.1807 27 9 1.6927 0.0149 2.3871 28 9 1.4616 -1.9931 1.3222 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 3.8088 0.6181 0.0374 33 1 5.1795 0.1336 -0.9897 34 1 4.3876 1.6675 -2.7698 35 1 3.0170 2.1520 -1.7427 36 1 5.4059 2.5614 -0.2922 37 1 7.0278 5.3514 0.5523 38 1 4.5112 -0.6906 -3.3525 39 1 3.0048 -1.6376 -3.3992 40 1 2.8445 -3.7726 -2.2748 41 1 4.0507 -5.7343 -1.4030 42 1 6.4470 -5.5659 -0.8622 43 1 7.6380 -3.4369 -1.1967 44 1 6.4332 -1.4769 -2.0743 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733571171.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:53:12 Heat of formation + Delta-G solvation = -146.909441 kcal Electronic energy + Delta-G solvation = -31747.782208 eV Core-core repulsion = 27057.612511 eV Total energy + Delta-G solvation = -4690.169697 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.145 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -50.25838 -47.75016 -47.67687 -40.41697 -39.00384 -36.40192 -34.51098 -34.02442 -32.02259 -31.03230 -30.91774 -27.97276 -27.02410 -26.06505 -23.99642 -23.21779 -22.59191 -21.74599 -21.31376 -19.43932 -18.71010 -18.48184 -18.01769 -17.22837 -17.03219 -16.68761 -15.91149 -15.56271 -15.07083 -14.98231 -14.61570 -14.53547 -14.46324 -14.13098 -14.01238 -13.82518 -13.78960 -13.68112 -13.53139 -13.40011 -13.21133 -13.03094 -12.99011 -12.68635 -12.41799 -11.98683 -11.85138 -11.69119 -11.48652 -11.29783 -11.05101 -10.98429 -10.94940 -10.79177 -10.18557 -10.06624 -9.83727 -8.98362 -8.94611 -8.87425 -8.68528 -7.05873 -5.85435 -3.16259 1.21314 1.37480 2.04954 2.77739 2.85790 3.38717 3.44336 3.45757 3.65314 3.74970 3.83626 3.93414 4.36907 4.55193 4.67636 4.73022 4.79671 4.90428 4.96226 5.08490 5.16687 5.21281 5.43447 5.44190 5.49376 5.52325 5.54946 5.61472 5.69405 5.80995 5.91943 5.94097 5.97842 6.02696 6.27070 6.41346 6.46335 6.52237 6.57032 6.63957 6.95398 7.23968 7.61956 7.92544 8.32049 9.43842 9.97002 10.31908 11.36874 Molecular weight = 344.15amu Principal moments of inertia in cm(-1) A = 0.009724 B = 0.003940 C = 0.003249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2878.670573 B = 7104.696122 C = 8616.702967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.167 4.167 3 H 0.144 0.856 4 C 0.526 3.474 5 O -0.523 6.523 6 N -0.590 5.590 7 C 0.083 3.917 8 C 0.139 3.861 9 N -0.730 5.730 10 C -0.244 4.244 11 H 0.071 0.929 12 C -0.009 4.009 13 N -0.931 5.931 14 Si 0.908 3.092 15 H -0.289 1.289 16 H -0.291 1.291 17 H -0.281 1.281 18 C 0.151 3.849 19 C -0.105 4.105 20 C -0.099 4.099 21 C -0.126 4.126 22 C -0.118 4.118 23 C -0.123 4.123 24 C -0.101 4.101 25 C 0.464 3.536 26 F -0.170 7.170 27 F -0.174 7.174 28 F -0.176 7.176 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.083 0.917 32 H 0.090 0.910 33 H 0.086 0.914 34 H 0.025 0.975 35 H 0.020 0.980 36 H 0.385 0.615 37 H 0.257 0.743 38 H 0.092 0.908 39 H 0.097 0.903 40 H 0.124 0.876 41 H 0.119 0.881 42 H 0.119 0.881 43 H 0.122 0.878 44 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.946 -17.253 -0.679 18.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.189 4.189 3 H 0.161 0.839 4 C 0.312 3.688 5 O -0.399 6.399 6 N -0.321 5.321 7 C -0.039 4.039 8 C 0.010 3.990 9 N -0.375 5.375 10 C -0.375 4.375 11 H 0.089 0.911 12 C -0.206 4.206 13 N -0.578 5.578 14 Si 0.739 3.261 15 H -0.216 1.216 16 H -0.217 1.217 17 H -0.207 1.207 18 C 0.030 3.970 19 C -0.106 4.106 20 C -0.118 4.118 21 C -0.144 4.144 22 C -0.137 4.137 23 C -0.141 4.141 24 C -0.119 4.119 25 C 0.409 3.591 26 F -0.152 7.152 27 F -0.155 7.155 28 F -0.158 7.158 29 H 0.097 0.903 30 H 0.094 0.906 31 H 0.102 0.898 32 H 0.108 0.892 33 H 0.104 0.896 34 H 0.043 0.957 35 H 0.038 0.962 36 H 0.219 0.781 37 H 0.066 0.934 38 H 0.110 0.890 39 H 0.115 0.885 40 H 0.142 0.858 41 H 0.137 0.863 42 H 0.137 0.863 43 H 0.140 0.860 44 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -7.337 -17.510 -1.096 19.017 hybrid contribution 0.600 0.940 0.280 1.150 sum -6.737 -16.570 -0.816 17.906 Atomic orbital electron populations 1.21686 0.88894 1.04700 1.04189 1.22768 1.01973 1.03491 0.90694 0.83869 1.19761 0.81886 0.81772 0.85383 1.90683 1.55254 1.37478 1.56443 1.47851 1.11957 1.37916 1.34338 1.22275 0.95802 0.88299 0.97566 1.20992 0.94937 0.87571 0.95519 1.42210 1.53704 1.07992 1.33589 1.19171 1.22616 0.86890 1.08831 0.91112 1.24745 0.99593 0.98402 0.97821 1.69654 1.32708 1.34194 1.21292 0.86184 0.77039 0.84628 0.78279 1.21608 1.21683 1.20707 1.20429 0.98610 0.90000 0.87996 1.20203 0.94275 0.95275 1.00852 1.21157 0.99900 0.92478 0.98232 1.21135 0.94727 0.98610 0.99893 1.21161 0.94756 0.97807 0.99947 1.21155 1.00024 0.93130 0.99752 1.21166 0.93953 0.98774 0.98047 1.20065 0.75802 0.77782 0.85402 1.93198 1.30030 1.95644 1.96287 1.93220 1.91859 1.76830 1.53635 1.93203 1.84258 1.41590 1.96705 0.90261 0.90556 0.89789 0.89221 0.89577 0.95746 0.96239 0.78135 0.93356 0.88962 0.88489 0.85820 0.86276 0.86322 0.86014 0.85686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.46 8.39 37.16 0.31 -1.15 16 2 C -0.17 -2.10 2.02 -91.77 -0.19 -2.28 16 3 H 0.14 1.77 6.77 -51.93 -0.35 1.42 16 4 C 0.53 7.45 6.48 -10.98 -0.07 7.38 16 5 O -0.52 -8.23 15.51 5.56 0.09 -8.14 16 6 N -0.59 -8.08 2.34 -175.06 -0.41 -8.49 16 7 C 0.08 1.25 4.36 -4.04 -0.02 1.23 16 8 C 0.14 2.54 6.56 -4.04 -0.03 2.52 16 9 N -0.73 -17.26 5.60 -59.91 -0.34 -17.60 16 10 C -0.24 -6.52 9.99 -15.06 -0.15 -6.67 16 11 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 12 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 13 N -0.93 -27.08 13.06 55.49 0.72 -26.36 16 14 Si 0.91 21.70 29.55 -169.99 -5.02 16.68 16 15 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 16 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 17 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 18 C 0.15 1.88 5.65 -5.20 -0.03 1.85 16 19 C -0.10 -1.30 5.46 -104.63 -0.57 -1.87 16 20 C -0.10 -1.22 9.70 -39.58 -0.38 -1.60 16 21 C -0.13 -1.38 10.05 -39.58 -0.40 -1.78 16 22 C -0.12 -1.24 10.05 -39.58 -0.40 -1.64 16 23 C -0.12 -1.35 10.05 -39.58 -0.40 -1.75 16 24 C -0.10 -1.21 9.35 -39.58 -0.37 -1.58 16 25 C 0.46 6.16 2.63 37.16 0.10 6.25 16 26 F -0.17 -2.46 13.68 2.25 0.03 -2.43 16 27 F -0.17 -2.29 17.04 2.25 0.04 -2.25 16 28 F -0.18 -2.41 16.41 2.25 0.04 -2.37 16 29 H 0.08 0.88 7.43 -51.93 -0.39 0.49 16 30 H 0.08 0.69 7.97 -51.93 -0.41 0.28 16 31 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.09 1.36 4.11 -51.93 -0.21 1.14 16 33 H 0.09 1.28 7.44 -51.93 -0.39 0.90 16 34 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.02 0.37 7.99 -51.93 -0.41 -0.05 16 36 H 0.38 9.55 7.67 -40.82 -0.31 9.24 16 37 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 38 H 0.09 1.06 8.06 -51.93 -0.42 0.64 16 39 H 0.10 1.20 7.15 -51.93 -0.37 0.83 16 40 H 0.12 1.53 8.06 -52.49 -0.42 1.11 16 41 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 42 H 0.12 0.98 8.06 -52.49 -0.42 0.55 16 43 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 44 H 0.13 1.43 7.77 -52.49 -0.41 1.02 16 LS Contribution 377.75 15.07 5.69 5.69 Total: -1.00 -30.64 377.75 -7.60 -38.24 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: -5.76 Total: 8.48 kcal Atomic # 6 Polarization: 1.24 SS G_CDS: -2.68 Total: -1.45 kcal Atomic # 7 Polarization: -52.43 SS G_CDS: -0.02 Total: -52.45 kcal Atomic # 8 Polarization: -8.23 SS G_CDS: 0.09 Total: -8.14 kcal Atomic # 9 Polarization: -7.16 SS G_CDS: 0.11 Total: -7.05 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -30.64 -7.60 -38.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733571171.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.669 kcal (2) G-P(sol) polarization free energy of solvation -30.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds