Wall clock time and date at job start Wed Apr 1 2020 03:53:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08992 * 109.47582 * 2 1 4 4 C 1.50704 * 109.46711 * 239.99259 * 2 1 3 5 5 O 1.21280 * 120.00013 * 341.18105 * 4 2 1 6 6 N 1.34783 * 119.99772 * 161.17572 * 4 2 1 7 7 C 1.46503 * 119.99568 * 354.04931 * 6 4 2 8 8 C 1.53003 * 109.47357 * 266.30351 * 7 6 4 9 9 N 1.46495 * 109.47084 * 180.02562 * 8 7 6 10 10 C 1.36940 * 119.99912 * 179.97438 * 9 8 7 11 11 H 1.07996 * 119.99669 * 0.02562 * 10 9 8 12 12 C 1.38806 * 120.00009 * 180.02562 * 10 9 8 13 13 N 1.31621 * 120.00104 * 0.02562 * 12 10 9 14 14 Si 1.86799 * 120.00158 * 180.02562 * 12 10 9 15 15 H 1.48502 * 109.47062 * 89.99936 * 14 12 10 16 16 H 1.48496 * 109.47213 * 209.99890 * 14 12 10 17 17 H 1.48503 * 109.47065 * 330.00174 * 14 12 10 18 18 C 1.46489 * 119.99756 * 174.05448 * 6 4 2 19 19 C 1.50701 * 109.47229 * 265.18164 * 18 6 4 20 20 C 1.38235 * 119.99703 * 91.35642 * 19 18 6 21 21 C 1.38244 * 119.99937 * 179.97438 * 20 19 18 22 22 C 1.38237 * 119.99951 * 0.07194 * 21 20 19 23 23 C 1.38236 * 119.99896 * 359.90849 * 22 21 20 24 24 C 1.38228 * 120.00257 * 271.34223 * 19 18 6 25 25 C 1.52998 * 109.46773 * 120.00137 * 2 1 3 26 26 F 1.39902 * 109.46901 * 173.84422 * 25 2 1 27 27 F 1.39906 * 109.47011 * 293.83811 * 25 2 1 28 28 F 1.39899 * 109.47442 * 53.84231 * 25 2 1 29 29 H 1.08996 * 109.47475 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46892 * 300.00522 * 1 2 3 31 31 H 1.09003 * 109.47077 * 60.00005 * 1 2 3 32 32 H 1.08996 * 109.47157 * 26.30779 * 7 6 4 33 33 H 1.09006 * 109.46496 * 146.30682 * 7 6 4 34 34 H 1.09001 * 109.46615 * 300.00828 * 8 7 6 35 35 H 1.08998 * 109.46697 * 60.00164 * 8 7 6 36 36 H 0.97000 * 119.99906 * 0.02562 * 9 8 7 37 37 H 0.96999 * 120.00162 * 180.02562 * 13 12 10 38 38 H 1.09004 * 109.47294 * 145.18452 * 18 6 4 39 39 H 1.08999 * 109.47928 * 25.18647 * 18 6 4 40 40 H 1.07994 * 120.00122 * 359.70647 * 20 19 18 41 41 H 1.08000 * 120.00081 * 179.97438 * 21 20 19 42 42 H 1.07993 * 120.00083 * 180.02562 * 22 21 20 43 43 H 1.08001 * 120.00043 * 180.02562 * 23 22 21 44 44 H 1.08000 * 119.99895 * 359.97438 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0322 -0.7106 -1.2304 5 8 1.2970 -1.4556 -1.8430 6 7 3.2985 -0.5180 -1.6501 7 6 4.1454 0.4785 -0.9898 8 6 4.0510 1.8073 -1.7425 9 7 4.8984 2.8035 -1.0826 10 6 4.9747 4.0763 -1.5821 11 1 4.4099 4.3456 -2.4623 12 6 5.7780 5.0201 -0.9572 13 7 6.4667 4.6917 0.1153 14 14 5.8816 6.7565 -1.6381 15 1 4.8317 7.5980 -1.0099 16 1 7.2191 7.3272 -1.3373 17 1 5.6763 6.7246 -3.1086 18 6 3.8278 -1.3051 -2.7665 19 6 4.5653 -2.5049 -2.2301 20 6 3.8966 -3.7000 -2.0419 21 6 4.5733 -4.8007 -1.5504 22 6 5.9183 -4.7059 -1.2458 23 6 6.5871 -3.5109 -1.4344 24 6 5.9106 -2.4104 -1.9267 25 6 2.0399 -0.7213 1.2492 26 9 3.4318 -0.8451 1.1807 27 9 1.6927 0.0149 2.3871 28 9 1.4616 -1.9931 1.3222 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 3.8088 0.6181 0.0374 33 1 5.1795 0.1336 -0.9897 34 1 4.3876 1.6675 -2.7698 35 1 3.0170 2.1520 -1.7427 36 1 5.4059 2.5614 -0.2922 37 1 7.0278 5.3514 0.5523 38 1 4.5112 -0.6906 -3.3525 39 1 3.0048 -1.6376 -3.3992 40 1 2.8445 -3.7726 -2.2748 41 1 4.0507 -5.7343 -1.4030 42 1 6.4470 -5.5659 -0.8622 43 1 7.6380 -3.4369 -1.1967 44 1 6.4332 -1.4769 -2.0743 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733571171.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:53:11 Heat of formation + Delta-G solvation = -162.621151 kcal Electronic energy + Delta-G solvation = -31748.463518 eV Core-core repulsion = 27057.612511 eV Total energy + Delta-G solvation = -4690.851008 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.145 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -51.34313 -48.85378 -48.74915 -41.51883 -39.92042 -37.72442 -36.09387 -35.10852 -33.47832 -32.42062 -31.79613 -29.49870 -27.99981 -27.12136 -25.73152 -24.30457 -23.57888 -23.20404 -22.24120 -20.56669 -19.84025 -19.62395 -19.27152 -18.83248 -18.12853 -17.69080 -17.06412 -16.80615 -16.32207 -15.99514 -15.89254 -15.70230 -15.62274 -15.34456 -15.22940 -15.14051 -15.08877 -14.88486 -14.83638 -14.53779 -14.36163 -14.27592 -13.97393 -13.58726 -13.37420 -13.09696 -12.95874 -12.91534 -12.86739 -12.76909 -12.57394 -12.28262 -12.15008 -12.03994 -11.87062 -11.82661 -11.21721 -10.93920 -9.91970 -9.82845 -9.71245 -9.02423 -7.94216 -5.24135 0.31666 0.49062 0.94630 1.50826 1.51179 1.59499 1.69060 1.78125 2.55109 2.61496 2.72887 2.83286 2.94431 3.30449 3.40308 3.68691 3.78837 3.85510 3.93598 3.95514 4.12455 4.15514 4.23164 4.28133 4.29547 4.53700 4.57320 4.62553 4.68882 4.70056 4.74726 4.92798 5.06103 5.08050 5.08997 5.14886 5.32566 5.51811 5.55568 5.60595 5.64917 6.08609 6.10230 6.27287 6.79643 7.34849 8.05619 8.29923 9.28574 Molecular weight = 344.15amu Principal moments of inertia in cm(-1) A = 0.009724 B = 0.003940 C = 0.003249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2878.670573 B = 7104.696122 C = 8616.702967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.165 4.165 3 H 0.146 0.854 4 C 0.524 3.476 5 O -0.539 6.539 6 N -0.586 5.586 7 C 0.100 3.900 8 C 0.142 3.858 9 N -0.740 5.740 10 C -0.245 4.245 11 H 0.075 0.925 12 C -0.067 4.067 13 N -0.965 5.965 14 Si 0.969 3.031 15 H -0.287 1.287 16 H -0.296 1.296 17 H -0.271 1.271 18 C 0.151 3.849 19 C -0.115 4.115 20 C -0.114 4.114 21 C -0.130 4.130 22 C -0.119 4.119 23 C -0.129 4.129 24 C -0.114 4.114 25 C 0.465 3.535 26 F -0.178 7.178 27 F -0.173 7.173 28 F -0.179 7.179 29 H 0.073 0.927 30 H 0.093 0.907 31 H 0.089 0.911 32 H 0.091 0.909 33 H 0.088 0.912 34 H 0.027 0.973 35 H 0.024 0.976 36 H 0.377 0.623 37 H 0.252 0.748 38 H 0.100 0.900 39 H 0.095 0.905 40 H 0.117 0.883 41 H 0.138 0.862 42 H 0.144 0.856 43 H 0.139 0.861 44 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.228 -17.755 -0.972 19.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.187 4.187 3 H 0.164 0.836 4 C 0.310 3.690 5 O -0.416 6.416 6 N -0.317 5.317 7 C -0.023 4.023 8 C 0.014 3.986 9 N -0.384 5.384 10 C -0.377 4.377 11 H 0.093 0.907 12 C -0.260 4.260 13 N -0.615 5.615 14 Si 0.798 3.202 15 H -0.214 1.214 16 H -0.223 1.223 17 H -0.196 1.196 18 C 0.029 3.971 19 C -0.116 4.116 20 C -0.132 4.132 21 C -0.148 4.148 22 C -0.137 4.137 23 C -0.147 4.147 24 C -0.132 4.132 25 C 0.410 3.590 26 F -0.160 7.160 27 F -0.154 7.154 28 F -0.160 7.160 29 H 0.092 0.908 30 H 0.112 0.888 31 H 0.108 0.892 32 H 0.109 0.891 33 H 0.106 0.894 34 H 0.045 0.955 35 H 0.042 0.958 36 H 0.209 0.791 37 H 0.061 0.939 38 H 0.118 0.882 39 H 0.113 0.887 40 H 0.135 0.865 41 H 0.156 0.844 42 H 0.162 0.838 43 H 0.157 0.843 44 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -7.647 -18.038 -1.421 19.643 hybrid contribution 0.658 0.992 0.343 1.239 sum -6.989 -17.046 -1.079 18.454 Atomic orbital electron populations 1.21726 0.87365 1.04749 1.05363 1.22816 1.03256 1.03133 0.89534 0.83583 1.20022 0.81733 0.81545 0.85658 1.90676 1.55576 1.38226 1.57127 1.47844 1.11777 1.37541 1.34532 1.21980 0.96209 0.87017 0.97092 1.21070 0.93963 0.88024 0.95501 1.42346 1.54296 1.08191 1.33556 1.19536 1.21598 0.88099 1.08471 0.90678 1.25483 1.00037 1.01983 0.98478 1.69794 1.33875 1.35075 1.22740 0.85213 0.76454 0.80374 0.78134 1.21436 1.22294 1.19556 1.20506 0.98725 0.90200 0.87630 1.20197 0.94568 0.95258 1.01553 1.21224 0.99798 0.93093 0.99111 1.21421 0.95206 0.98975 0.99226 1.21493 0.94650 0.98466 0.99138 1.21448 1.00995 0.93033 0.99197 1.21282 0.93928 0.99369 0.98627 1.20142 0.75395 0.77731 0.85691 1.93179 1.30772 1.95682 1.96337 1.93222 1.91797 1.76759 1.53612 1.93198 1.84238 1.41836 1.96737 0.90755 0.88802 0.89218 0.89106 0.89351 0.95533 0.95840 0.79078 0.93923 0.88219 0.88650 0.86495 0.84374 0.83778 0.84284 0.85615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.68 8.39 71.98 0.60 -2.08 16 2 C -0.17 -3.97 2.02 -11.54 -0.02 -4.00 16 3 H 0.15 3.44 6.77 -2.39 -0.02 3.42 16 4 C 0.52 14.43 6.48 87.66 0.57 15.00 16 5 O -0.54 -16.65 15.51 -3.03 -0.05 -16.70 16 6 N -0.59 -15.66 2.34 -826.15 -1.94 -17.59 16 7 C 0.10 2.93 4.36 86.38 0.38 3.31 16 8 C 0.14 5.09 6.56 86.38 0.57 5.66 16 9 N -0.74 -34.70 5.60 -343.46 -1.92 -36.62 16 10 C -0.25 -12.95 9.99 84.03 0.84 -12.11 16 11 H 0.08 3.83 7.83 -2.91 -0.02 3.80 16 12 C -0.07 -3.67 5.50 84.86 0.47 -3.20 16 13 N -0.96 -56.46 13.06 21.65 0.28 -56.17 16 14 Si 0.97 44.34 29.55 68.60 2.03 46.37 16 15 H -0.29 -12.96 7.11 99.48 0.71 -12.26 16 16 H -0.30 -13.73 7.11 99.48 0.71 -13.02 16 17 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 18 C 0.15 3.67 5.65 85.64 0.48 4.16 16 19 C -0.11 -2.79 5.46 -19.87 -0.11 -2.90 16 20 C -0.11 -2.72 9.70 22.27 0.22 -2.51 16 21 C -0.13 -2.68 10.05 22.27 0.22 -2.45 16 22 C -0.12 -2.27 10.05 22.27 0.22 -2.04 16 23 C -0.13 -2.64 10.05 22.27 0.22 -2.42 16 24 C -0.11 -2.63 9.35 22.27 0.21 -2.42 16 25 C 0.47 11.90 2.63 71.98 0.19 12.09 16 26 F -0.18 -5.02 13.68 44.97 0.62 -4.41 16 27 F -0.17 -4.35 17.04 44.97 0.77 -3.58 16 28 F -0.18 -4.73 16.41 44.97 0.74 -4.00 16 29 H 0.07 1.56 7.43 -2.39 -0.02 1.55 16 30 H 0.09 1.52 7.97 -2.38 -0.02 1.50 16 31 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.09 2.68 4.11 -2.39 -0.01 2.67 16 33 H 0.09 2.58 7.44 -2.38 -0.02 2.56 16 34 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.02 0.84 7.99 -2.39 -0.02 0.82 16 36 H 0.38 18.75 7.67 -92.71 -0.71 18.04 16 37 H 0.25 14.37 8.31 -92.71 -0.77 13.60 16 38 H 0.10 2.23 8.06 -2.39 -0.02 2.21 16 39 H 0.10 2.35 7.15 -2.39 -0.02 2.33 16 40 H 0.12 2.89 8.06 -2.91 -0.02 2.87 16 41 H 0.14 2.21 8.06 -2.91 -0.02 2.19 16 42 H 0.14 1.94 8.06 -2.91 -0.02 1.92 16 43 H 0.14 2.29 8.06 -2.91 -0.02 2.26 16 44 H 0.13 2.81 7.77 -2.91 -0.02 2.78 16 Total: -1.00 -63.68 377.75 5.91 -57.77 By element: Atomic # 1 Polarization: 30.51 SS G_CDS: 0.33 Total: 30.83 kcal Atomic # 6 Polarization: -0.97 SS G_CDS: 5.06 Total: 4.09 kcal Atomic # 7 Polarization: -106.81 SS G_CDS: -3.58 Total: -110.39 kcal Atomic # 8 Polarization: -16.65 SS G_CDS: -0.05 Total: -16.70 kcal Atomic # 9 Polarization: -14.10 SS G_CDS: 2.12 Total: -11.98 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.37 kcal Total: -63.68 5.91 -57.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733571171.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.851 kcal (2) G-P(sol) polarization free energy of solvation -63.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds