Wall clock time and date at job start Wed Apr 1 2020 03:53:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.47157 * 2 1 4 4 C 1.50696 * 109.47173 * 120.00368 * 2 1 3 5 5 O 1.21284 * 119.99726 * 15.90396 * 4 2 1 6 6 N 1.34773 * 120.00134 * 195.62790 * 4 2 1 7 7 C 1.46497 * 119.99779 * 5.32650 * 6 4 2 8 8 C 1.52998 * 109.47214 * 89.40034 * 7 6 4 9 9 N 1.46497 * 109.47214 * 180.02562 * 8 7 6 10 10 C 1.36942 * 119.99817 * 179.97438 * 9 8 7 11 11 H 1.07999 * 120.00047 * 359.97438 * 10 9 8 12 12 C 1.38816 * 120.00145 * 180.02562 * 10 9 8 13 13 N 1.31626 * 119.99552 * 359.97438 * 12 10 9 14 14 Si 1.86794 * 120.00224 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47426 * 59.99483 * 14 12 10 16 16 H 1.48498 * 109.47167 * 179.97438 * 14 12 10 17 17 H 1.48506 * 109.46975 * 299.99271 * 14 12 10 18 18 C 1.46498 * 120.00361 * 185.32941 * 6 4 2 19 19 C 1.50707 * 109.47215 * 94.96911 * 18 6 4 20 20 C 1.38228 * 120.00214 * 274.71807 * 19 18 6 21 21 C 1.38231 * 119.99791 * 179.76707 * 20 19 18 22 22 C 1.38238 * 120.00019 * 0.50312 * 21 20 19 23 23 C 1.38231 * 119.99779 * 359.74907 * 22 21 20 24 24 C 1.38231 * 120.00371 * 0.02562 * 23 22 21 25 25 C 1.52996 * 109.46487 * 240.00178 * 2 1 3 26 26 F 1.39898 * 109.47528 * 306.23856 * 25 2 1 27 27 F 1.39896 * 109.47569 * 66.23892 * 25 2 1 28 28 F 1.39908 * 109.46832 * 186.23693 * 25 2 1 29 29 H 1.08998 * 109.47612 * 179.97438 * 1 2 3 30 30 H 1.09008 * 109.46950 * 299.99544 * 1 2 3 31 31 H 1.08997 * 109.47582 * 59.99346 * 1 2 3 32 32 H 1.09002 * 109.47490 * 209.40179 * 7 6 4 33 33 H 1.08999 * 109.47248 * 329.40092 * 7 6 4 34 34 H 1.09007 * 109.47071 * 299.99692 * 8 7 6 35 35 H 1.08992 * 109.47234 * 59.99603 * 8 7 6 36 36 H 0.96993 * 120.00181 * 359.97438 * 9 8 7 37 37 H 0.97003 * 119.99491 * 180.02562 * 13 12 10 38 38 H 1.08995 * 109.47306 * 214.97721 * 18 6 4 39 39 H 1.09001 * 109.46702 * 334.97457 * 18 6 4 40 40 H 1.08000 * 120.00302 * 359.97438 * 20 19 18 41 41 H 1.08007 * 119.99923 * 180.22490 * 21 20 19 42 42 H 1.08001 * 119.99988 * 179.72879 * 22 21 20 43 43 H 1.08003 * 119.99857 * 179.97438 * 23 22 21 44 44 H 1.07996 * 119.99943 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 8 1.2821 -1.4140 1.8731 6 7 3.3167 -0.5685 1.6133 7 6 4.1936 0.3661 0.9036 8 6 4.1006 1.7474 1.5549 9 7 4.9771 2.6821 0.8448 10 6 5.0590 3.9872 1.2514 11 1 4.4771 4.3275 2.0952 12 6 5.8890 4.8731 0.5783 13 7 6.5978 4.4585 -0.4505 14 14 6.0013 6.6532 1.1332 15 1 6.4843 6.7047 2.5365 16 1 6.9496 7.3861 0.2566 17 1 4.6595 7.2838 1.0481 18 6 3.8359 -1.3488 2.7393 19 6 4.5039 -2.5962 2.2204 20 6 3.7518 -3.7269 1.9626 21 6 4.3638 -4.8694 1.4822 22 6 5.7297 -4.8845 1.2694 23 6 6.4825 -3.7553 1.5321 24 6 5.8698 -2.6113 2.0081 25 6 2.0398 -0.7212 -1.2493 26 9 1.4601 -1.9923 -1.3233 27 9 1.6942 0.0158 -2.3870 28 9 3.4316 -0.8467 -1.1800 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 5.2223 0.0090 0.9543 33 1 3.8838 0.4345 -0.1391 34 1 3.0720 2.1045 1.5042 35 1 4.4104 1.6790 2.5977 36 1 5.4993 2.3766 0.0868 37 1 7.1781 5.0775 -0.9206 38 1 4.5609 -0.7513 3.2918 39 1 3.0139 -1.6249 3.3997 40 1 2.6854 -3.7167 2.1334 41 1 3.7756 -5.7517 1.2773 42 1 6.2085 -5.7785 0.8981 43 1 7.5497 -3.7672 1.3662 44 1 6.4582 -1.7293 2.2138 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733571172.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:53:16 Heat of formation + Delta-G solvation = -141.484083 kcal Electronic energy + Delta-G solvation = -31816.918209 eV Core-core repulsion = 27126.983773 eV Total energy + Delta-G solvation = -4689.934436 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.145 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -50.30871 -47.83771 -47.67613 -40.40284 -38.99957 -36.37563 -34.51440 -34.00108 -32.02448 -31.02570 -30.91177 -27.95881 -27.01901 -26.04449 -23.98536 -23.24361 -22.58539 -21.76515 -21.31794 -19.41552 -18.68354 -18.55218 -18.07316 -17.23799 -17.00426 -16.68586 -15.88901 -15.56441 -15.07460 -15.02682 -14.69835 -14.53936 -14.45811 -14.16477 -14.03215 -13.81921 -13.80025 -13.60071 -13.52227 -13.39954 -13.16816 -12.99654 -12.95954 -12.70940 -12.42227 -11.98737 -11.85063 -11.67369 -11.45722 -11.27789 -11.02280 -10.94423 -10.93000 -10.70145 -10.21015 -10.06371 -9.82528 -8.97055 -8.94847 -8.86734 -8.66164 -7.04934 -5.84536 -3.15293 1.21355 1.37305 2.05833 2.79175 2.84786 3.39679 3.44520 3.45302 3.65524 3.75068 3.82868 3.93695 4.37128 4.55862 4.68004 4.73265 4.79874 4.92375 4.95934 5.09031 5.19869 5.23476 5.43744 5.44996 5.50779 5.53489 5.55819 5.61371 5.70931 5.86009 5.92524 5.94059 5.98769 6.03720 6.27528 6.41204 6.46162 6.53517 6.58322 6.65444 6.95268 7.25639 7.62092 7.93624 8.33053 9.44682 9.98144 10.33122 11.37703 Molecular weight = 344.15amu Principal moments of inertia in cm(-1) A = 0.009903 B = 0.003954 C = 0.003273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2826.882787 B = 7080.432448 C = 8552.783659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.166 4.166 3 H 0.145 0.855 4 C 0.526 3.474 5 O -0.524 6.524 6 N -0.589 5.589 7 C 0.068 3.932 8 C 0.139 3.861 9 N -0.729 5.729 10 C -0.245 4.245 11 H 0.070 0.930 12 C -0.009 4.009 13 N -0.931 5.931 14 Si 0.908 3.092 15 H -0.285 1.285 16 H -0.290 1.290 17 H -0.285 1.285 18 C 0.152 3.848 19 C -0.104 4.104 20 C -0.099 4.099 21 C -0.125 4.125 22 C -0.119 4.119 23 C -0.123 4.123 24 C -0.102 4.102 25 C 0.464 3.536 26 F -0.176 7.176 27 F -0.173 7.173 28 F -0.166 7.166 29 H 0.078 0.922 30 H 0.083 0.917 31 H 0.075 0.925 32 H 0.086 0.914 33 H 0.104 0.896 34 H 0.018 0.982 35 H 0.024 0.976 36 H 0.385 0.615 37 H 0.257 0.743 38 H 0.091 0.909 39 H 0.097 0.903 40 H 0.124 0.876 41 H 0.119 0.881 42 H 0.119 0.881 43 H 0.122 0.878 44 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.430 -17.012 1.515 18.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.189 4.189 3 H 0.162 0.838 4 C 0.312 3.688 5 O -0.400 6.400 6 N -0.319 5.319 7 C -0.055 4.055 8 C 0.010 3.990 9 N -0.374 5.374 10 C -0.376 4.376 11 H 0.088 0.912 12 C -0.205 4.205 13 N -0.579 5.579 14 Si 0.739 3.261 15 H -0.212 1.212 16 H -0.216 1.216 17 H -0.212 1.212 18 C 0.030 3.970 19 C -0.106 4.106 20 C -0.118 4.118 21 C -0.143 4.143 22 C -0.137 4.137 23 C -0.141 4.141 24 C -0.120 4.120 25 C 0.409 3.591 26 F -0.158 7.158 27 F -0.155 7.155 28 F -0.147 7.147 29 H 0.097 0.903 30 H 0.102 0.898 31 H 0.094 0.906 32 H 0.104 0.896 33 H 0.121 0.879 34 H 0.036 0.964 35 H 0.041 0.959 36 H 0.219 0.781 37 H 0.067 0.933 38 H 0.109 0.891 39 H 0.115 0.885 40 H 0.142 0.858 41 H 0.137 0.863 42 H 0.137 0.863 43 H 0.140 0.860 44 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -7.826 -17.237 1.924 19.028 hybrid contribution 0.630 0.936 -0.284 1.163 sum -7.196 -16.301 1.640 17.894 Atomic orbital electron populations 1.21680 0.88899 1.04668 1.04180 1.22779 1.01951 1.03561 0.90590 0.83759 1.19760 0.82087 0.81387 0.85603 1.90682 1.55227 1.39216 1.54875 1.47852 1.09990 1.40863 1.33241 1.22605 0.95264 0.89322 0.98280 1.20997 0.94556 0.87911 0.95541 1.42199 1.51334 1.06962 1.36952 1.19131 1.21341 0.85696 1.11419 0.91181 1.24747 0.99426 0.98336 0.98034 1.69650 1.31076 1.34831 1.22298 0.86258 0.77387 0.84721 0.77732 1.21206 1.21603 1.21177 1.20433 0.99230 0.89436 0.87940 1.20208 0.93967 0.95522 1.00862 1.21163 1.00047 0.92589 0.97966 1.21137 0.94906 0.98243 1.00038 1.21160 0.94196 0.98331 1.00002 1.21146 0.99951 0.93287 0.99698 1.21160 0.94150 0.98306 0.98414 1.20106 0.75695 0.77799 0.85504 1.93203 1.84184 1.41665 1.96711 1.93222 1.91865 1.76764 1.53601 1.93103 1.30183 1.95309 1.96095 0.90313 0.89764 0.90571 0.89572 0.87884 0.96398 0.95866 0.78130 0.93312 0.89058 0.88490 0.85777 0.86279 0.86321 0.86030 0.85716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.46 8.35 37.16 0.31 -1.15 16 2 C -0.17 -2.10 2.03 -91.77 -0.19 -2.29 16 3 H 0.14 1.81 6.46 -51.93 -0.34 1.48 16 4 C 0.53 7.46 6.56 -10.99 -0.07 7.38 16 5 O -0.52 -8.22 15.44 5.55 0.09 -8.14 16 6 N -0.59 -8.11 2.34 -175.06 -0.41 -8.52 16 7 C 0.07 1.02 4.36 -4.04 -0.02 1.01 16 8 C 0.14 2.57 6.48 -4.04 -0.03 2.54 16 9 N -0.73 -17.35 5.60 -59.91 -0.34 -17.69 16 10 C -0.24 -6.57 9.99 -15.06 -0.15 -6.72 16 11 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 12 C -0.01 -0.25 5.50 -17.43 -0.10 -0.34 16 13 N -0.93 -27.16 13.06 55.49 0.72 -26.43 16 14 Si 0.91 21.75 29.55 -169.99 -5.02 16.73 16 15 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 16 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 17 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 18 C 0.15 1.89 5.62 -5.19 -0.03 1.86 16 19 C -0.10 -1.30 5.46 -104.62 -0.57 -1.87 16 20 C -0.10 -1.23 9.72 -39.59 -0.38 -1.61 16 21 C -0.13 -1.39 10.05 -39.58 -0.40 -1.78 16 22 C -0.12 -1.24 10.05 -39.58 -0.40 -1.64 16 23 C -0.12 -1.34 10.05 -39.59 -0.40 -1.74 16 24 C -0.10 -1.21 9.67 -39.58 -0.38 -1.59 16 25 C 0.46 6.17 2.63 37.16 0.10 6.26 16 26 F -0.18 -2.40 16.41 2.25 0.04 -2.36 16 27 F -0.17 -2.30 17.04 2.25 0.04 -2.26 16 28 F -0.17 -2.40 13.11 2.25 0.03 -2.37 16 29 H 0.08 0.87 7.45 -51.93 -0.39 0.48 16 30 H 0.08 0.86 8.14 -51.92 -0.42 0.43 16 31 H 0.08 0.69 7.97 -51.93 -0.41 0.28 16 32 H 0.09 1.30 8.06 -51.93 -0.42 0.88 16 33 H 0.10 1.59 3.79 -51.93 -0.20 1.39 16 34 H 0.02 0.34 7.44 -51.93 -0.39 -0.05 16 35 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.38 9.61 7.67 -40.82 -0.31 9.30 16 37 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 38 H 0.09 1.05 8.02 -51.93 -0.42 0.63 16 39 H 0.10 1.21 7.20 -51.93 -0.37 0.83 16 40 H 0.12 1.58 8.01 -52.49 -0.42 1.16 16 41 H 0.12 1.08 8.06 -52.48 -0.42 0.66 16 42 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 43 H 0.12 1.10 8.06 -52.48 -0.42 0.68 16 44 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 LS Contribution 377.12 15.07 5.68 5.68 Total: -1.00 -30.63 377.12 -7.62 -38.24 By element: Atomic # 1 Polarization: 14.54 SS G_CDS: -5.74 Total: 8.80 kcal Atomic # 6 Polarization: 1.02 SS G_CDS: -2.70 Total: -1.69 kcal Atomic # 7 Polarization: -52.61 SS G_CDS: -0.02 Total: -52.63 kcal Atomic # 8 Polarization: -8.22 SS G_CDS: 0.09 Total: -8.14 kcal Atomic # 9 Polarization: -7.10 SS G_CDS: 0.10 Total: -6.99 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -30.63 -7.62 -38.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733571172.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.243 kcal (2) G-P(sol) polarization free energy of solvation -30.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds