Wall clock time and date at job start Wed Apr 1 2020 03:53:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.47157 * 2 1 4 4 C 1.50696 * 109.47173 * 120.00368 * 2 1 3 5 5 O 1.21284 * 119.99726 * 15.90396 * 4 2 1 6 6 N 1.34773 * 120.00134 * 195.62790 * 4 2 1 7 7 C 1.46497 * 119.99779 * 5.32650 * 6 4 2 8 8 C 1.52998 * 109.47214 * 89.40034 * 7 6 4 9 9 N 1.46497 * 109.47214 * 180.02562 * 8 7 6 10 10 C 1.36942 * 119.99817 * 179.97438 * 9 8 7 11 11 H 1.07999 * 120.00047 * 359.97438 * 10 9 8 12 12 C 1.38816 * 120.00145 * 180.02562 * 10 9 8 13 13 N 1.31626 * 119.99552 * 359.97438 * 12 10 9 14 14 Si 1.86794 * 120.00224 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47426 * 59.99483 * 14 12 10 16 16 H 1.48498 * 109.47167 * 179.97438 * 14 12 10 17 17 H 1.48506 * 109.46975 * 299.99271 * 14 12 10 18 18 C 1.46498 * 120.00361 * 185.32941 * 6 4 2 19 19 C 1.50707 * 109.47215 * 94.96911 * 18 6 4 20 20 C 1.38228 * 120.00214 * 274.71807 * 19 18 6 21 21 C 1.38231 * 119.99791 * 179.76707 * 20 19 18 22 22 C 1.38238 * 120.00019 * 0.50312 * 21 20 19 23 23 C 1.38231 * 119.99779 * 359.74907 * 22 21 20 24 24 C 1.38231 * 120.00371 * 0.02562 * 23 22 21 25 25 C 1.52996 * 109.46487 * 240.00178 * 2 1 3 26 26 F 1.39898 * 109.47528 * 306.23856 * 25 2 1 27 27 F 1.39896 * 109.47569 * 66.23892 * 25 2 1 28 28 F 1.39908 * 109.46832 * 186.23693 * 25 2 1 29 29 H 1.08998 * 109.47612 * 179.97438 * 1 2 3 30 30 H 1.09008 * 109.46950 * 299.99544 * 1 2 3 31 31 H 1.08997 * 109.47582 * 59.99346 * 1 2 3 32 32 H 1.09002 * 109.47490 * 209.40179 * 7 6 4 33 33 H 1.08999 * 109.47248 * 329.40092 * 7 6 4 34 34 H 1.09007 * 109.47071 * 299.99692 * 8 7 6 35 35 H 1.08992 * 109.47234 * 59.99603 * 8 7 6 36 36 H 0.96993 * 120.00181 * 359.97438 * 9 8 7 37 37 H 0.97003 * 119.99491 * 180.02562 * 13 12 10 38 38 H 1.08995 * 109.47306 * 214.97721 * 18 6 4 39 39 H 1.09001 * 109.46702 * 334.97457 * 18 6 4 40 40 H 1.08000 * 120.00302 * 359.97438 * 20 19 18 41 41 H 1.08007 * 119.99923 * 180.22490 * 21 20 19 42 42 H 1.08001 * 119.99988 * 179.72879 * 22 21 20 43 43 H 1.08003 * 119.99857 * 179.97438 * 23 22 21 44 44 H 1.07996 * 119.99943 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 8 1.2821 -1.4140 1.8731 6 7 3.3167 -0.5685 1.6133 7 6 4.1936 0.3661 0.9036 8 6 4.1006 1.7474 1.5549 9 7 4.9771 2.6821 0.8448 10 6 5.0590 3.9872 1.2514 11 1 4.4771 4.3275 2.0952 12 6 5.8890 4.8731 0.5783 13 7 6.5978 4.4585 -0.4505 14 14 6.0013 6.6532 1.1332 15 1 6.4843 6.7047 2.5365 16 1 6.9496 7.3861 0.2566 17 1 4.6595 7.2838 1.0481 18 6 3.8359 -1.3488 2.7393 19 6 4.5039 -2.5962 2.2204 20 6 3.7518 -3.7269 1.9626 21 6 4.3638 -4.8694 1.4822 22 6 5.7297 -4.8845 1.2694 23 6 6.4825 -3.7553 1.5321 24 6 5.8698 -2.6113 2.0081 25 6 2.0398 -0.7212 -1.2493 26 9 1.4601 -1.9923 -1.3233 27 9 1.6942 0.0158 -2.3870 28 9 3.4316 -0.8467 -1.1800 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 5.2223 0.0090 0.9543 33 1 3.8838 0.4345 -0.1391 34 1 3.0720 2.1045 1.5042 35 1 4.4104 1.6790 2.5977 36 1 5.4993 2.3766 0.0868 37 1 7.1781 5.0775 -0.9206 38 1 4.5609 -0.7513 3.2918 39 1 3.0139 -1.6249 3.3997 40 1 2.6854 -3.7167 2.1334 41 1 3.7756 -5.7517 1.2773 42 1 6.2085 -5.7785 0.8981 43 1 7.5497 -3.7672 1.3662 44 1 6.4582 -1.7293 2.2138 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733571172.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:53:15 Heat of formation + Delta-G solvation = -157.200935 kcal Electronic energy + Delta-G solvation = -31817.599743 eV Core-core repulsion = 27126.983773 eV Total energy + Delta-G solvation = -4690.615969 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.145 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -51.40044 -48.94661 -48.75331 -41.50711 -39.91597 -37.70536 -36.09345 -35.09843 -33.47980 -32.41649 -31.79621 -29.48860 -27.99426 -27.11258 -25.72414 -24.32853 -23.57143 -23.24003 -22.24074 -20.54800 -19.84079 -19.68099 -19.28135 -18.90591 -18.09754 -17.68954 -17.04070 -16.81895 -16.33103 -16.02234 -15.98664 -15.72399 -15.62826 -15.34085 -15.22380 -15.14425 -15.09807 -14.89807 -14.81343 -14.49894 -14.36160 -14.27290 -13.94186 -13.61423 -13.37243 -13.09147 -12.95093 -12.90835 -12.82070 -12.76199 -12.52370 -12.25950 -12.15798 -11.97933 -11.87090 -11.82101 -11.21772 -10.92251 -9.90309 -9.83010 -9.70707 -9.02184 -7.93883 -5.23855 0.31820 0.49018 0.95086 1.50673 1.52414 1.58520 1.69989 1.76677 2.55232 2.61107 2.72141 2.82753 2.94192 3.29990 3.40366 3.68803 3.79563 3.87130 3.94340 3.98669 4.13114 4.15827 4.24228 4.29155 4.29452 4.56251 4.58305 4.63115 4.69464 4.69967 4.74520 4.92356 5.07581 5.08376 5.09465 5.14850 5.33419 5.51494 5.55515 5.60512 5.65457 6.09121 6.10667 6.27460 6.80366 7.34948 8.05988 8.30394 9.28685 Molecular weight = 344.15amu Principal moments of inertia in cm(-1) A = 0.009903 B = 0.003954 C = 0.003273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2826.882787 B = 7080.432448 C = 8552.783659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.164 4.164 3 H 0.146 0.854 4 C 0.524 3.476 5 O -0.539 6.539 6 N -0.586 5.586 7 C 0.085 3.915 8 C 0.142 3.858 9 N -0.740 5.740 10 C -0.247 4.247 11 H 0.075 0.925 12 C -0.067 4.067 13 N -0.965 5.965 14 Si 0.970 3.030 15 H -0.279 1.279 16 H -0.296 1.296 17 H -0.278 1.278 18 C 0.151 3.849 19 C -0.114 4.114 20 C -0.114 4.114 21 C -0.131 4.131 22 C -0.120 4.120 23 C -0.128 4.128 24 C -0.114 4.114 25 C 0.464 3.536 26 F -0.178 7.178 27 F -0.172 7.172 28 F -0.174 7.174 29 H 0.073 0.927 30 H 0.089 0.911 31 H 0.093 0.907 32 H 0.088 0.912 33 H 0.104 0.896 34 H 0.023 0.977 35 H 0.024 0.976 36 H 0.377 0.623 37 H 0.252 0.748 38 H 0.099 0.901 39 H 0.095 0.905 40 H 0.115 0.885 41 H 0.137 0.863 42 H 0.145 0.855 43 H 0.140 0.860 44 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.691 -17.456 1.807 19.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.187 4.187 3 H 0.164 0.836 4 C 0.310 3.690 5 O -0.417 6.417 6 N -0.316 5.316 7 C -0.038 4.038 8 C 0.014 3.986 9 N -0.383 5.383 10 C -0.379 4.379 11 H 0.093 0.907 12 C -0.260 4.260 13 N -0.615 5.615 14 Si 0.799 3.201 15 H -0.205 1.205 16 H -0.222 1.222 17 H -0.204 1.204 18 C 0.029 3.971 19 C -0.116 4.116 20 C -0.133 4.133 21 C -0.149 4.149 22 C -0.138 4.138 23 C -0.146 4.146 24 C -0.132 4.132 25 C 0.410 3.590 26 F -0.159 7.159 27 F -0.154 7.154 28 F -0.155 7.155 29 H 0.093 0.907 30 H 0.108 0.892 31 H 0.112 0.888 32 H 0.106 0.894 33 H 0.122 0.878 34 H 0.041 0.959 35 H 0.042 0.958 36 H 0.209 0.791 37 H 0.061 0.939 38 H 0.118 0.882 39 H 0.113 0.887 40 H 0.133 0.867 41 H 0.155 0.845 42 H 0.162 0.838 43 H 0.158 0.842 44 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -8.117 -17.704 2.250 19.606 hybrid contribution 0.679 0.971 -0.341 1.233 sum -7.438 -16.733 1.909 18.411 Atomic orbital electron populations 1.21720 0.87337 1.04753 1.05343 1.22824 1.03260 1.03135 0.89464 0.83600 1.20013 0.81947 0.81160 0.85866 1.90675 1.55520 1.39922 1.55542 1.47845 1.09804 1.40521 1.33436 1.22314 0.95668 0.87841 0.97983 1.21080 0.93571 0.88712 0.95196 1.42336 1.51982 1.06971 1.37059 1.19508 1.20426 0.86999 1.10950 0.90705 1.25492 0.99820 1.02110 0.98541 1.69794 1.32180 1.35808 1.23677 0.85279 0.77318 0.80280 0.77264 1.20527 1.22234 1.20401 1.20512 0.99359 0.89670 0.87524 1.20202 0.94332 0.95433 1.01591 1.21203 0.99739 0.93353 0.98970 1.21413 0.95580 0.98409 0.99457 1.21494 0.93977 0.99123 0.99161 1.21451 1.01076 0.93054 0.99037 1.21300 0.94016 0.99030 0.98880 1.20181 0.75285 0.77773 0.85767 1.93199 1.84148 1.41850 1.96737 1.93222 1.91806 1.76714 1.53608 1.93082 1.30935 1.95340 1.96140 0.90749 0.89201 0.88828 0.89384 0.87823 0.95898 0.95774 0.79092 0.93917 0.88245 0.88704 0.86712 0.84481 0.83767 0.84173 0.85403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.68 8.35 71.98 0.60 -2.08 16 2 C -0.16 -3.99 2.03 -11.54 -0.02 -4.01 16 3 H 0.15 3.50 6.46 -2.39 -0.02 3.49 16 4 C 0.52 14.47 6.56 87.66 0.58 15.05 16 5 O -0.54 -16.64 15.44 -3.04 -0.05 -16.69 16 6 N -0.59 -15.75 2.34 -826.17 -1.93 -17.68 16 7 C 0.08 2.51 4.36 86.38 0.38 2.89 16 8 C 0.14 5.14 6.48 86.38 0.56 5.70 16 9 N -0.74 -34.91 5.60 -343.46 -1.92 -36.83 16 10 C -0.25 -13.10 9.99 84.03 0.84 -12.26 16 11 H 0.08 3.82 7.83 -2.91 -0.02 3.80 16 12 C -0.07 -3.67 5.50 84.86 0.47 -3.20 16 13 N -0.96 -56.59 13.06 21.65 0.28 -56.31 16 14 Si 0.97 44.41 29.55 68.60 2.03 46.44 16 15 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 16 H -0.30 -13.73 7.11 99.48 0.71 -13.03 16 17 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 18 C 0.15 3.69 5.62 85.64 0.48 4.17 16 19 C -0.11 -2.79 5.46 -19.86 -0.11 -2.89 16 20 C -0.11 -2.77 9.72 22.27 0.22 -2.55 16 21 C -0.13 -2.71 10.05 22.27 0.22 -2.49 16 22 C -0.12 -2.26 10.05 22.27 0.22 -2.04 16 23 C -0.13 -2.59 10.05 22.27 0.22 -2.37 16 24 C -0.11 -2.59 9.67 22.27 0.22 -2.38 16 25 C 0.46 11.95 2.63 71.98 0.19 12.14 16 26 F -0.18 -4.70 16.41 44.97 0.74 -3.96 16 27 F -0.17 -4.39 17.04 44.97 0.77 -3.63 16 28 F -0.17 -4.92 13.11 44.97 0.59 -4.33 16 29 H 0.07 1.56 7.45 -2.39 -0.02 1.54 16 30 H 0.09 1.70 8.14 -2.38 -0.02 1.68 16 31 H 0.09 1.53 7.97 -2.39 -0.02 1.51 16 32 H 0.09 2.61 8.06 -2.39 -0.02 2.59 16 33 H 0.10 3.13 3.79 -2.39 -0.01 3.12 16 34 H 0.02 0.83 7.44 -2.38 -0.02 0.81 16 35 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.38 18.87 7.67 -92.71 -0.71 18.16 16 37 H 0.25 14.44 8.31 -92.71 -0.77 13.67 16 38 H 0.10 2.22 8.02 -2.39 -0.02 2.20 16 39 H 0.09 2.35 7.20 -2.39 -0.02 2.34 16 40 H 0.11 2.94 8.01 -2.91 -0.02 2.92 16 41 H 0.14 2.25 8.06 -2.91 -0.02 2.23 16 42 H 0.14 1.94 8.06 -2.91 -0.02 1.91 16 43 H 0.14 2.23 8.06 -2.91 -0.02 2.21 16 44 H 0.13 2.75 8.06 -2.91 -0.02 2.72 16 Total: -1.00 -63.70 377.12 5.89 -57.82 By element: Atomic # 1 Polarization: 31.16 SS G_CDS: 0.33 Total: 31.49 kcal Atomic # 6 Polarization: -1.39 SS G_CDS: 5.06 Total: 3.67 kcal Atomic # 7 Polarization: -107.25 SS G_CDS: -3.57 Total: -110.82 kcal Atomic # 8 Polarization: -16.64 SS G_CDS: -0.05 Total: -16.69 kcal Atomic # 9 Polarization: -14.00 SS G_CDS: 2.09 Total: -11.91 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.44 kcal Total: -63.70 5.89 -57.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733571172.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.385 kcal (2) G-P(sol) polarization free energy of solvation -63.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds