Wall clock time and date at job start Wed Apr 1 2020 02:44:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35375 * 116.99967 * 2 1 4 4 C 1.36091 * 125.57729 * 179.97438 * 3 2 1 5 5 C 1.39915 * 107.17301 * 179.97438 * 4 3 2 6 6 C 1.37829 * 106.67722 * 359.97438 * 5 4 3 7 7 C 1.46131 * 126.02948 * 179.97438 * 6 5 4 8 8 O 1.21771 * 119.99812 * 0.02562 * 7 6 5 9 9 N 1.34770 * 119.99856 * 179.97438 * 7 6 5 10 10 C 1.46505 * 119.99921 * 180.02562 * 9 7 6 11 11 C 1.50697 * 109.46856 * 180.02562 * 10 9 7 12 12 C 1.38242 * 119.99785 * 269.72329 * 11 10 9 13 13 C 1.38230 * 120.00093 * 179.81583 * 12 11 10 14 14 C 1.38232 * 119.99954 * 0.41648 * 13 12 11 15 15 C 1.50706 * 119.99984 * 179.79383 * 14 13 12 16 16 H 1.08997 * 109.46843 * 160.02226 * 15 14 13 17 17 C 1.52998 * 109.47100 * 280.02235 * 15 14 13 18 18 N 1.46497 * 109.47133 * 40.02554 * 15 14 13 19 19 C 1.36934 * 120.00097 * 155.00248 * 18 15 14 20 20 H 1.08002 * 120.00268 * 359.97438 * 19 18 15 21 21 C 1.38817 * 120.00045 * 179.97438 * 19 18 15 22 22 N 1.31616 * 119.99756 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99870 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47064 * 60.00527 * 23 21 19 25 25 H 1.48505 * 109.46620 * 180.02562 * 23 21 19 26 26 H 1.48499 * 109.47335 * 300.00385 * 23 21 19 27 27 C 1.38237 * 120.00410 * 359.81333 * 14 13 12 28 28 C 1.38236 * 119.99546 * 0.02562 * 27 14 13 29 29 O 1.34009 * 125.57426 * 359.97438 * 3 2 1 30 30 H 1.09002 * 109.47313 * 60.00707 * 1 2 3 31 31 H 1.09009 * 109.47067 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47556 * 300.00047 * 1 2 3 33 33 H 1.08004 * 126.41459 * 0.23896 * 4 3 2 34 34 H 1.07996 * 126.65689 * 180.02562 * 5 4 3 35 35 H 0.97001 * 120.00221 * 0.02562 * 9 7 6 36 36 H 1.09001 * 109.46699 * 300.00276 * 10 9 7 37 37 H 1.09000 * 109.46992 * 60.00317 * 10 9 7 38 38 H 1.07995 * 119.99824 * 0.02562 * 12 11 10 39 39 H 1.08001 * 119.99859 * 180.21465 * 13 12 11 40 40 H 1.09002 * 109.47037 * 180.02562 * 17 15 14 41 41 H 1.09002 * 109.46974 * 300.00126 * 17 15 14 42 42 H 1.09000 * 109.47026 * 59.99808 * 17 15 14 43 43 H 0.97001 * 119.99979 * 334.99412 * 18 15 14 44 44 H 0.97006 * 120.00189 * 180.02562 * 22 21 19 45 45 H 1.07994 * 120.00620 * 179.97438 * 27 14 13 46 46 H 1.08001 * 119.99825 * 179.97438 * 28 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0435 1.2062 0.0000 4 6 3.3892 1.4092 0.0005 5 6 3.5983 2.7926 -0.0003 6 6 2.3520 3.3810 -0.0019 7 6 2.0792 4.8167 -0.0026 8 8 3.0016 5.6116 -0.0023 9 7 0.8068 5.2608 -0.0046 10 6 0.5333 6.7001 -0.0060 11 6 -0.9562 6.9284 -0.0075 12 6 -1.6374 7.0379 -1.2055 13 6 -3.0044 7.2434 -1.2070 14 6 -3.6889 7.3481 -0.0107 15 6 -5.1785 7.5768 -0.0124 16 1 -5.5920 7.2847 0.9529 17 6 -5.4667 9.0583 -0.2634 18 7 -5.7948 6.7732 -1.0709 19 6 -7.1083 6.3997 -0.9702 20 1 -7.6900 6.6972 -0.1102 21 6 -7.6924 5.6386 -1.9735 22 7 -6.9835 5.2756 -3.0213 23 14 -9.4842 5.1285 -1.8357 24 1 -10.3394 6.3402 -1.7607 25 1 -9.8636 4.3272 -3.0271 26 1 -9.6736 4.3122 -0.6098 27 6 -3.0071 7.2433 1.1873 28 6 -1.6406 7.0344 1.1888 29 8 1.4263 2.3957 -0.0005 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 4.1528 0.6454 -0.0027 34 1 4.5513 3.3007 -0.0006 35 1 0.0720 4.6276 -0.0053 36 1 0.9692 7.1535 0.8843 37 1 0.9715 7.1524 -0.8957 38 1 -1.1021 6.9594 -2.1402 39 1 -3.5370 7.3255 -2.1430 40 1 -6.5441 9.2238 -0.2642 41 1 -5.0081 9.6562 0.5242 42 1 -5.0531 9.3504 -1.2287 43 1 -5.2723 6.5057 -1.8432 44 1 -7.3917 4.7441 -3.7227 45 1 -3.5418 7.3255 2.1220 46 1 -1.1079 6.9530 2.1248 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733683450.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:44:03 Heat of formation + Delta-G solvation = -41.594705 kcal Electronic energy + Delta-G solvation = -28563.453852 eV Core-core repulsion = 24419.707685 eV Total energy + Delta-G solvation = -4143.746167 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 2.29 seconds Orbital eigenvalues (eV) -43.83611 -40.95965 -40.25225 -39.49831 -37.46492 -35.89143 -34.33684 -34.08924 -32.09441 -31.80231 -30.71197 -29.94245 -28.34089 -26.98883 -25.83617 -24.07438 -23.65400 -23.08964 -22.80053 -21.50461 -21.10591 -20.04101 -19.39827 -18.94513 -18.17163 -17.45650 -17.08477 -16.79396 -16.46599 -16.32106 -16.13782 -15.93134 -15.52372 -15.39523 -15.00127 -14.92385 -14.47968 -14.30804 -14.26946 -14.10396 -13.99474 -13.78174 -13.57822 -13.42585 -13.07672 -13.04585 -12.83071 -12.70879 -12.55392 -12.43596 -12.19350 -12.02482 -11.63317 -11.60822 -11.48460 -11.12051 -10.99712 -10.30918 -9.80412 -9.57424 -9.18145 -9.03112 -7.94475 -5.22861 -0.08231 0.28197 0.52176 1.11481 1.28152 1.47005 1.49506 1.55455 1.99213 2.05800 2.26258 2.55783 2.92067 3.39712 3.60618 3.72559 3.80353 3.86629 3.98105 4.03787 4.14357 4.17801 4.22190 4.30934 4.34798 4.52161 4.53757 4.58549 4.65840 4.66420 4.76489 4.78691 4.83557 5.00174 5.05527 5.11062 5.16545 5.21261 5.24414 5.39837 5.42294 5.49866 5.54693 5.61709 5.82930 6.01851 6.08594 6.27594 6.34633 6.93276 7.33898 8.08547 8.32797 9.28837 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.010186 B = 0.002421 C = 0.002038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2748.307686 B =11565.038322 C =13735.717593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.267 6.267 3 C 0.211 3.789 4 C -0.242 4.242 5 C -0.073 4.073 6 C -0.129 4.129 7 C 0.609 3.391 8 O -0.555 6.555 9 N -0.709 5.709 10 C 0.171 3.829 11 C -0.118 4.118 12 C -0.098 4.098 13 C -0.124 4.124 14 C -0.072 4.072 15 C 0.199 3.801 16 H 0.055 0.945 17 C -0.149 4.149 18 N -0.734 5.734 19 C -0.240 4.240 20 H 0.077 0.923 21 C -0.075 4.075 22 N -0.970 5.970 23 Si 0.971 3.029 24 H -0.279 1.279 25 H -0.297 1.297 26 H -0.278 1.278 27 C -0.122 4.122 28 C -0.092 4.092 29 O -0.195 6.195 30 H 0.063 0.937 31 H 0.137 0.863 32 H 0.067 0.933 33 H 0.187 0.813 34 H 0.182 0.818 35 H 0.411 0.589 36 H 0.089 0.911 37 H 0.080 0.920 38 H 0.132 0.868 39 H 0.104 0.896 40 H 0.042 0.958 41 H 0.069 0.931 42 H 0.039 0.961 43 H 0.374 0.626 44 H 0.250 0.750 45 H 0.139 0.861 46 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.283 -5.281 9.494 23.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.181 6.181 3 C 0.114 3.886 4 C -0.262 4.262 5 C -0.094 4.094 6 C -0.179 4.179 7 C 0.398 3.602 8 O -0.436 6.436 9 N -0.359 5.359 10 C 0.049 3.951 11 C -0.119 4.119 12 C -0.117 4.117 13 C -0.142 4.142 14 C -0.073 4.073 15 C 0.091 3.909 16 H 0.073 0.927 17 C -0.209 4.209 18 N -0.376 5.376 19 C -0.371 4.371 20 H 0.095 0.905 21 C -0.267 4.267 22 N -0.620 5.620 23 Si 0.800 3.200 24 H -0.205 1.205 25 H -0.224 1.224 26 H -0.204 1.204 27 C -0.140 4.140 28 C -0.110 4.110 29 O -0.096 6.096 30 H 0.082 0.918 31 H 0.155 0.845 32 H 0.086 0.914 33 H 0.205 0.795 34 H 0.199 0.801 35 H 0.246 0.754 36 H 0.107 0.893 37 H 0.098 0.902 38 H 0.150 0.850 39 H 0.122 0.878 40 H 0.061 0.939 41 H 0.088 0.912 42 H 0.059 0.941 43 H 0.208 0.792 44 H 0.059 0.941 45 H 0.156 0.844 46 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 20.483 -4.843 9.568 23.121 hybrid contribution -1.782 -0.721 -0.798 2.081 sum 18.702 -5.564 8.771 21.392 Atomic orbital electron populations 1.23458 0.74881 1.06957 1.02973 1.86416 1.24763 1.18128 1.88752 1.21198 0.90154 0.78331 0.98933 1.21124 0.92280 0.97127 1.15643 1.22279 0.97890 0.92957 0.96242 1.21816 0.87734 0.87114 1.21249 1.16406 0.83258 0.84231 0.76347 1.90882 1.45000 1.54564 1.53156 1.46002 1.07110 1.09037 1.73756 1.20210 0.90930 0.80141 1.03838 1.19740 0.94731 1.04007 0.93378 1.21142 0.93442 0.98630 0.98439 1.20965 0.94694 1.00826 0.97763 1.20333 0.95595 0.97358 0.94061 1.19418 0.88090 0.91194 0.92204 0.92686 1.22264 1.00772 0.96968 1.00926 1.42710 1.09719 1.62280 1.22854 1.19598 0.88463 1.25391 1.03680 0.90533 1.25525 1.02193 1.01922 0.97091 1.69808 1.37304 1.43679 1.11247 0.85245 0.80315 0.77844 0.76559 1.20483 1.22354 1.20380 1.21198 0.94795 1.00622 0.97374 1.21237 0.93632 0.97993 0.98166 1.83948 1.37881 1.14565 1.73164 0.91828 0.84461 0.91411 0.79523 0.80109 0.75382 0.89303 0.90194 0.85032 0.87834 0.93862 0.91175 0.94131 0.79226 0.94095 0.84366 0.83421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.13 10.74 113.37 1.22 1.35 16 2 O -0.27 -4.48 10.55 -64.45 -0.68 -5.16 16 3 C 0.21 4.01 7.86 67.32 0.53 4.54 16 4 C -0.24 -3.98 10.89 22.18 0.24 -3.74 16 5 C -0.07 -1.34 10.66 22.58 0.24 -1.10 16 6 C -0.13 -2.82 7.15 24.22 0.17 -2.65 16 7 C 0.61 14.56 7.77 86.29 0.67 15.23 16 8 O -0.55 -15.97 16.87 -4.58 -0.08 -16.05 16 9 N -0.71 -14.80 5.54 -471.32 -2.61 -17.41 16 10 C 0.17 3.41 5.80 85.63 0.50 3.90 16 11 C -0.12 -2.66 5.25 -19.86 -0.10 -2.76 16 12 C -0.10 -2.61 9.70 22.27 0.22 -2.40 16 13 C -0.12 -4.11 9.05 22.27 0.20 -3.90 16 14 C -0.07 -2.40 4.95 -19.86 -0.10 -2.50 16 15 C 0.20 7.71 3.09 44.25 0.14 7.85 16 16 H 0.06 2.12 7.94 -2.39 -0.02 2.10 16 17 C -0.15 -5.24 9.47 71.98 0.68 -4.56 16 18 N -0.73 -36.44 5.07 -326.50 -1.66 -38.10 16 19 C -0.24 -13.07 9.93 84.04 0.83 -12.24 16 20 H 0.08 3.99 7.83 -2.91 -0.02 3.96 16 21 C -0.08 -4.26 5.50 84.86 0.47 -3.79 16 22 N -0.97 -58.71 13.06 21.65 0.28 -58.42 16 23 Si 0.97 45.52 29.55 68.60 2.03 47.55 16 24 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 25 H -0.30 -14.10 7.11 99.48 0.71 -13.40 16 26 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 27 C -0.12 -3.20 9.67 22.27 0.22 -2.99 16 28 C -0.09 -2.02 9.70 22.27 0.22 -1.80 16 29 O -0.19 -4.09 9.88 13.49 0.13 -3.96 16 30 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.14 0.92 8.14 -2.38 -0.02 0.91 16 32 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.19 2.06 8.06 -2.91 -0.02 2.04 16 34 H 0.18 2.70 8.06 -2.91 -0.02 2.68 16 35 H 0.41 8.14 8.21 -92.71 -0.76 7.38 16 36 H 0.09 1.63 8.08 -2.39 -0.02 1.61 16 37 H 0.08 1.61 8.08 -2.39 -0.02 1.59 16 38 H 0.13 3.11 8.06 -2.91 -0.02 3.09 16 39 H 0.10 3.89 6.92 -2.91 -0.02 3.87 16 40 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 41 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 42 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 43 H 0.37 19.92 6.07 -92.71 -0.56 19.36 16 44 H 0.25 14.76 8.31 -92.70 -0.77 13.99 16 45 H 0.14 3.12 8.04 -2.91 -0.02 3.09 16 46 H 0.15 2.40 8.06 -2.91 -0.02 2.38 16 Total: -1.00 -69.00 399.60 3.44 -65.55 By element: Atomic # 1 Polarization: 37.86 SS G_CDS: -0.31 Total: 37.55 kcal Atomic # 6 Polarization: -17.89 SS G_CDS: 6.33 Total: -11.56 kcal Atomic # 7 Polarization: -109.94 SS G_CDS: -3.99 Total: -113.93 kcal Atomic # 8 Polarization: -24.54 SS G_CDS: -0.62 Total: -25.17 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 2.03 Total: 47.55 kcal Total: -69.00 3.44 -65.55 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733683450.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.959 kcal (2) G-P(sol) polarization free energy of solvation -68.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.29 seconds