Wall clock time and date at job start Wed Apr 1 2020 03:04:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 109.47577 * 2 1 4 4 N 1.46501 * 109.47077 * 239.99986 * 2 1 3 5 5 C 1.36943 * 119.99964 * 84.99960 * 4 2 1 6 6 H 1.08001 * 119.99366 * 359.97438 * 5 4 2 7 7 C 1.38804 * 119.99811 * 180.02562 * 5 4 2 8 8 N 1.31614 * 120.00352 * 359.97438 * 7 5 4 9 9 Si 1.86806 * 119.99866 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.47156 * 89.99398 * 9 7 5 11 11 H 1.48490 * 109.47297 * 209.99758 * 9 7 5 12 12 H 1.48509 * 109.46801 * 329.99810 * 9 7 5 13 13 C 1.53008 * 109.47371 * 120.00378 * 2 1 3 14 14 H 1.08994 * 109.51233 * 175.09993 * 13 2 1 15 15 C 1.53300 * 109.54984 * 295.22549 * 13 2 1 16 16 N 1.47150 * 108.38137 * 172.25283 * 15 13 2 17 17 C 1.34775 * 120.98394 * 129.48816 * 16 15 13 18 18 O 1.21568 * 120.00050 * 176.02371 * 17 16 15 19 19 C 1.47704 * 120.00006 * 356.02218 * 17 16 15 20 20 C 1.41503 * 126.52202 * 186.53944 * 19 17 16 21 21 C 1.35364 * 105.50331 * 179.84310 * 20 19 17 22 22 N 1.35027 * 107.22928 * 0.41598 * 21 20 19 23 23 C 1.46508 * 124.88380 * 179.72785 * 22 21 20 24 24 F 1.39908 * 109.46740 * 210.02607 * 23 22 21 25 25 F 1.39900 * 109.46633 * 330.01982 * 23 22 21 26 26 N 1.28464 * 110.23560 * 359.72582 * 22 21 20 27 27 C 1.47160 * 118.03608 * 309.46280 * 16 15 13 28 28 C 1.53294 * 108.38315 * 50.53530 * 27 16 15 29 29 O 1.42959 * 109.51136 * 54.99456 * 13 2 1 30 30 H 1.09007 * 109.46825 * 299.99809 * 1 2 3 31 31 H 1.08996 * 109.47429 * 59.99845 * 1 2 3 32 32 H 1.09003 * 109.47143 * 180.02562 * 1 2 3 33 33 H 0.97001 * 120.00548 * 264.99965 * 4 2 1 34 34 H 0.97007 * 120.00347 * 180.02562 * 8 7 5 35 35 H 1.08992 * 109.68157 * 291.97539 * 15 13 2 36 36 H 1.08999 * 109.68344 * 52.52810 * 15 13 2 37 37 H 1.08000 * 127.24317 * 359.97438 * 20 19 17 38 38 H 1.08007 * 126.38321 * 180.14173 * 21 20 19 39 39 H 1.08997 * 109.47618 * 90.02449 * 23 22 21 40 40 H 1.09002 * 109.68012 * 290.81756 * 27 16 15 41 41 H 1.08992 * 109.68150 * 170.26029 * 27 16 15 42 42 H 1.09000 * 109.51313 * 67.62071 * 28 27 16 43 43 H 1.09000 * 109.51230 * 187.72077 * 28 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1491 -0.0075 -2.3758 6 1 1.8918 1.0403 -2.4243 7 6 2.6112 -0.6619 -3.5093 8 7 2.9243 -1.9390 -3.4502 9 14 2.7903 0.2701 -5.1182 10 1 4.1529 0.8543 -5.2029 11 1 2.5793 -0.6608 -6.2557 12 1 1.7810 1.3580 -5.1750 13 6 2.0401 -0.7214 1.2492 14 1 3.1265 -0.7983 1.2071 15 6 1.6306 0.0659 2.4993 16 7 1.9669 -0.7382 3.6849 17 6 2.6704 -0.2091 4.7055 18 8 2.8762 -0.8664 5.7071 19 6 3.1912 1.1696 4.6068 20 6 4.0487 1.8138 5.5298 21 6 4.2579 3.0525 5.0256 22 7 3.5565 3.1397 3.8751 23 6 3.5047 4.3231 3.0129 24 9 2.2699 4.3681 2.3566 25 9 3.6611 5.4746 3.7918 26 7 2.9411 2.0357 3.6452 27 6 1.5119 -2.1372 3.7236 28 6 1.9270 -2.8170 2.4139 29 8 1.4705 -2.0312 1.3103 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 2.2490 -1.6318 -1.1527 34 1 3.2476 -2.3963 -4.2422 35 1 2.1720 1.0113 2.5314 36 1 0.5578 0.2572 2.4777 37 1 4.4531 1.4029 6.4431 38 1 4.8681 3.8282 5.4643 39 1 4.3062 4.2711 2.2760 40 1 0.4270 -2.1677 3.8252 41 1 1.9746 -2.6505 4.5664 42 1 3.0130 -2.9016 2.3759 43 1 1.4824 -3.8109 2.3627 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755442146.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:04:25 Heat of formation + Delta-G solvation = -73.028076 kcal Electronic energy + Delta-G solvation = -31373.513385 eV Core-core repulsion = 26706.467386 eV Total energy + Delta-G solvation = -4667.045999 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.145 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -50.41937 -48.53188 -43.84100 -41.32228 -39.60257 -37.03147 -35.91096 -34.36319 -33.99536 -32.23245 -31.66243 -30.15385 -28.68424 -27.55698 -26.39341 -25.08759 -24.53179 -22.85323 -22.72852 -21.14763 -20.60615 -19.70501 -19.27410 -19.24159 -18.50553 -18.13758 -17.68173 -17.05827 -16.89367 -16.70540 -16.18045 -16.09856 -15.82727 -15.58434 -15.38490 -15.28806 -14.99535 -14.86216 -14.65709 -14.42707 -14.36619 -14.15610 -13.98521 -13.59017 -13.38747 -13.23523 -13.05008 -12.82241 -12.49505 -12.40915 -12.16030 -12.08236 -11.65638 -11.62086 -11.59786 -11.26119 -10.91432 -10.89335 -10.68666 -10.35286 -9.64995 -8.97973 -7.88746 -5.17637 0.18709 0.67625 0.99101 1.49448 1.51426 1.59795 1.71566 2.14577 2.53426 2.59232 2.72445 2.82030 3.27365 3.45277 3.50057 3.59828 3.69632 3.87463 3.94353 4.00219 4.06017 4.19021 4.34125 4.38153 4.41765 4.52803 4.58336 4.63411 4.75501 4.76379 4.80805 4.96290 5.06370 5.14843 5.26514 5.37079 5.53231 5.54991 5.63183 6.08693 6.24323 6.32311 6.52743 6.90093 7.38540 8.14252 8.39235 9.34989 Molecular weight = 344.14amu Principal moments of inertia in cm(-1) A = 0.009508 B = 0.003893 C = 0.002971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2944.308864 B = 7190.667441 C = 9423.024235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.181 3.819 3 H 0.065 0.935 4 N -0.733 5.733 5 C -0.236 4.236 6 H 0.080 0.920 7 C -0.077 4.077 8 N -0.971 5.971 9 Si 0.971 3.029 10 H -0.286 1.286 11 H -0.300 1.300 12 H -0.268 1.268 13 C 0.089 3.911 14 H 0.040 0.960 15 C 0.062 3.938 16 N -0.600 5.600 17 C 0.600 3.400 18 O -0.560 6.560 19 C -0.017 4.017 20 C -0.183 4.183 21 C 0.027 3.973 22 N -0.352 5.352 23 C 0.497 3.503 24 F -0.182 7.182 25 F -0.171 7.171 26 N -0.265 5.265 27 C 0.081 3.919 28 C 0.046 3.954 29 O -0.383 6.383 30 H 0.067 0.933 31 H 0.038 0.962 32 H 0.042 0.958 33 H 0.374 0.626 34 H 0.249 0.751 35 H 0.146 0.854 36 H 0.085 0.915 37 H 0.181 0.819 38 H 0.234 0.766 39 H 0.210 0.790 40 H 0.090 0.910 41 H 0.105 0.895 42 H 0.045 0.955 43 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.625 12.982 20.071 24.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.072 3.928 3 H 0.083 0.917 4 N -0.373 5.373 5 C -0.368 4.368 6 H 0.098 0.902 7 C -0.269 4.269 8 N -0.622 5.622 9 Si 0.801 3.199 10 H -0.213 1.213 11 H -0.227 1.227 12 H -0.193 1.193 13 C 0.030 3.970 14 H 0.058 0.942 15 C -0.062 4.062 16 N -0.332 5.332 17 C 0.388 3.612 18 O -0.437 6.437 19 C -0.178 4.178 20 C -0.210 4.210 21 C -0.114 4.114 22 N -0.148 5.148 23 C 0.366 3.634 24 F -0.163 7.163 25 F -0.152 7.152 26 N -0.099 5.099 27 C -0.041 4.041 28 C -0.031 4.031 29 O -0.302 6.302 30 H 0.086 0.914 31 H 0.058 0.942 32 H 0.061 0.939 33 H 0.206 0.794 34 H 0.058 0.942 35 H 0.162 0.838 36 H 0.103 0.897 37 H 0.198 0.802 38 H 0.251 0.749 39 H 0.226 0.774 40 H 0.108 0.892 41 H 0.123 0.877 42 H 0.063 0.937 43 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 1.972 13.044 19.263 23.347 hybrid contribution 0.529 -0.311 -0.202 0.646 sum 2.501 12.733 19.061 23.058 Atomic orbital electron populations 1.22229 0.97309 1.00965 1.00431 1.20377 0.93550 0.94605 0.84224 0.91747 1.42563 1.78221 1.10453 1.06062 1.19659 1.34666 0.94249 0.88177 0.90249 1.25543 1.03156 0.96793 1.01402 1.69851 1.52742 1.10355 1.29270 0.85166 0.77927 0.77426 0.79412 1.21335 1.22672 1.19275 1.22648 0.95979 0.83536 0.94876 0.94168 1.23356 1.03283 0.97088 0.82432 1.48098 1.53206 1.13327 1.18615 1.17227 0.77239 0.84340 0.82427 1.90751 1.60282 1.61764 1.30936 1.22092 1.04792 0.94874 0.96060 1.22112 1.02463 0.93988 1.02475 1.23511 1.00286 1.00541 0.87040 1.47335 1.35730 1.11104 1.20643 1.22327 0.86766 0.71443 0.82821 1.93151 1.47423 1.95503 1.80216 1.93154 1.95692 1.48975 1.77366 1.73183 1.18428 0.93909 1.24353 1.22456 1.01339 0.80685 0.99643 1.23103 0.99258 0.95890 0.84885 1.88043 1.68010 1.26054 1.48097 0.91389 0.94246 0.93874 0.79442 0.94250 0.83753 0.89714 0.80167 0.74935 0.77417 0.89155 0.87706 0.93675 0.85413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.49 9.06 71.98 0.65 -4.84 16 2 C 0.18 7.22 2.77 44.99 0.12 7.35 16 3 H 0.06 2.48 8.08 -2.39 -0.02 2.46 16 4 N -0.73 -37.59 5.10 -322.94 -1.65 -39.23 16 5 C -0.24 -13.01 9.93 84.03 0.83 -12.17 16 6 H 0.08 4.14 7.83 -2.91 -0.02 4.11 16 7 C -0.08 -4.43 5.50 84.86 0.47 -3.96 16 8 N -0.97 -60.28 13.06 21.65 0.28 -60.00 16 9 Si 0.97 45.90 29.55 68.60 2.03 47.93 16 10 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 11 H -0.30 -14.44 7.11 99.48 0.71 -13.73 16 12 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 13 C 0.09 3.12 2.61 30.70 0.08 3.20 16 14 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 15 C 0.06 1.80 5.68 86.36 0.49 2.29 16 16 N -0.60 -17.07 3.02 -820.92 -2.48 -19.54 16 17 C 0.60 17.70 7.71 86.75 0.67 18.37 16 18 O -0.56 -18.56 16.42 -3.93 -0.06 -18.62 16 19 C -0.02 -0.43 6.90 42.45 0.29 -0.14 16 20 C -0.18 -3.35 10.81 22.41 0.24 -3.11 16 21 C 0.03 0.33 10.98 83.54 0.92 1.24 16 22 N -0.35 -5.72 3.68 -364.67 -1.34 -7.06 16 23 C 0.50 5.35 6.56 127.77 0.84 6.19 16 24 F -0.18 -3.21 17.26 44.97 0.78 -2.43 16 25 F -0.17 -1.65 16.96 44.97 0.76 -0.89 16 26 N -0.26 -6.19 8.09 -48.17 -0.39 -6.58 16 27 C 0.08 2.04 6.62 86.35 0.57 2.61 16 28 C 0.05 1.26 6.98 72.08 0.50 1.77 16 29 O -0.38 -13.68 9.24 -148.98 -1.38 -15.06 16 30 H 0.07 2.03 6.42 -2.38 -0.02 2.01 16 31 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.04 1.69 7.56 -2.39 -0.02 1.67 16 33 H 0.37 21.20 7.58 -92.71 -0.70 20.49 16 34 H 0.25 15.00 8.31 -92.70 -0.77 14.23 16 35 H 0.15 4.10 3.88 -65.25 -0.25 3.85 16 36 H 0.08 2.37 6.27 -2.39 -0.01 2.35 16 37 H 0.18 2.77 8.06 -2.91 -0.02 2.75 16 38 H 0.23 0.65 8.06 -2.91 -0.02 0.63 16 39 H 0.21 0.51 8.14 -2.39 -0.02 0.49 16 40 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 41 H 0.10 2.54 7.11 -2.39 -0.02 2.52 16 42 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 43 H 0.13 2.87 8.14 -2.39 -0.02 2.85 16 Total: -1.00 -76.67 363.81 3.36 -73.31 By element: Atomic # 1 Polarization: 29.26 SS G_CDS: 0.12 Total: 29.39 kcal Atomic # 6 Polarization: 12.11 SS G_CDS: 6.68 Total: 18.80 kcal Atomic # 7 Polarization: -126.84 SS G_CDS: -5.57 Total: -132.42 kcal Atomic # 8 Polarization: -32.24 SS G_CDS: -1.44 Total: -33.68 kcal Atomic # 9 Polarization: -4.86 SS G_CDS: 1.54 Total: -3.32 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 2.03 Total: 47.93 kcal Total: -76.67 3.36 -73.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755442146.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.284 kcal (2) G-P(sol) polarization free energy of solvation -76.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds