Wall clock time and date at job start Wed Apr 1 2020 03:04:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.47130 * 2 1 4 4 N 1.46499 * 109.47170 * 120.00093 * 2 1 3 5 5 C 1.36941 * 120.00118 * 274.72406 * 4 2 1 6 6 H 1.08004 * 119.99833 * 0.02562 * 5 4 2 7 7 C 1.38803 * 120.00104 * 179.97438 * 5 4 2 8 8 N 1.31627 * 120.00214 * 179.97438 * 7 5 4 9 9 Si 1.86806 * 120.00187 * 0.02562 * 7 5 4 10 10 H 1.48502 * 109.46924 * 89.99555 * 9 7 5 11 11 H 1.48495 * 109.47027 * 209.99668 * 9 7 5 12 12 H 1.48499 * 109.46867 * 329.99728 * 9 7 5 13 13 C 1.53001 * 109.47055 * 240.00002 * 2 1 3 14 14 H 1.09002 * 109.51322 * 185.09774 * 13 2 1 15 15 C 1.53299 * 109.50815 * 65.00010 * 13 2 1 16 16 N 1.47155 * 108.37917 * 187.76905 * 15 13 2 17 17 C 1.34777 * 120.98436 * 230.55241 * 16 15 13 18 18 O 1.21570 * 119.99782 * 355.90502 * 17 16 15 19 19 C 1.47710 * 120.00159 * 175.89706 * 17 16 15 20 20 C 1.41495 * 126.51946 * 186.43254 * 19 17 16 21 21 C 1.35364 * 105.50512 * 179.97438 * 20 19 17 22 22 N 1.35039 * 107.22964 * 359.97438 * 21 20 19 23 23 C 1.46494 * 124.88875 * 180.02562 * 22 21 20 24 24 F 1.39897 * 109.47483 * 210.00665 * 23 22 21 25 25 F 1.39908 * 109.46883 * 330.00217 * 23 22 21 26 26 N 1.28470 * 110.22510 * 359.75172 * 22 21 20 27 27 C 1.47157 * 118.03549 * 50.54008 * 16 15 13 28 28 C 1.53301 * 108.38220 * 309.46123 * 27 16 15 29 29 O 1.42956 * 109.22423 * 52.30093 * 28 27 16 30 30 H 1.09001 * 109.47481 * 60.00175 * 1 2 3 31 31 H 1.09000 * 109.47130 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47145 * 299.99521 * 1 2 3 33 33 H 0.96998 * 120.00345 * 95.00229 * 4 2 1 34 34 H 0.96992 * 120.00193 * 180.02562 * 8 7 5 35 35 H 1.08993 * 109.68555 * 307.49125 * 15 13 2 36 36 H 1.08996 * 109.68118 * 68.05673 * 15 13 2 37 37 H 1.07998 * 127.25126 * 359.95642 * 20 19 17 38 38 H 1.08003 * 126.38666 * 180.02562 * 21 20 19 39 39 H 1.08996 * 109.47244 * 89.99863 * 23 22 21 40 40 H 1.09000 * 109.68291 * 69.18214 * 27 16 15 41 41 H 1.08997 * 109.68201 * 189.73479 * 27 16 15 42 42 H 1.09002 * 109.50810 * 172.22700 * 28 27 16 43 43 H 1.09000 * 109.50687 * 292.32550 * 28 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.1545 -0.0061 2.3744 6 1 1.9015 1.0428 2.4219 7 6 2.6167 -0.6606 3.5078 8 7 2.7481 -0.0026 4.6402 9 14 3.0537 -2.4750 3.4259 10 1 4.4851 -2.6233 3.0595 11 1 2.8141 -3.1021 4.7504 12 1 2.2091 -3.1417 2.4025 13 6 2.0400 -0.7213 -1.2493 14 1 3.1262 -0.8014 -1.2055 15 6 1.6349 0.0698 -2.4983 16 7 1.9698 -0.7333 -3.6850 17 6 2.6771 -0.2050 -4.7034 18 8 2.9844 0.9711 -4.6842 19 6 3.0791 -1.0549 -5.8426 20 6 3.9239 -0.6817 -6.9146 21 6 4.0055 -1.7751 -7.7085 22 7 3.2525 -2.7403 -7.1386 23 6 3.0693 -4.0892 -7.6798 24 9 1.8092 -4.5725 -7.3112 25 9 3.1632 -4.0485 -9.0751 26 7 2.7244 -2.3072 -6.0505 27 6 1.5098 -2.1306 -3.7269 28 6 1.9210 -2.8143 -2.4179 29 8 1.4659 -2.0290 -1.3135 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 2.2491 -1.6318 1.1526 34 1 3.0714 -0.4598 5.4321 35 1 0.5627 0.2648 -2.4777 36 1 2.1797 1.0133 -2.5280 37 1 4.4026 0.2742 -7.0675 38 1 4.5686 -1.8599 -8.6262 39 1 3.8415 -4.7480 -7.2828 40 1 0.4250 -2.1570 -3.8299 41 1 1.9718 -2.6440 -4.5702 42 1 1.4720 -3.8064 -2.3688 43 1 3.0066 -2.9037 -2.3793 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755442147.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:04:29 Heat of formation + Delta-G solvation = -70.676059 kcal Electronic energy + Delta-G solvation = -30751.682686 eV Core-core repulsion = 26084.738678 eV Total energy + Delta-G solvation = -4666.944008 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.145 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -50.42242 -48.53866 -43.85629 -41.36505 -39.61753 -37.28950 -35.88174 -34.45022 -34.01175 -32.45109 -31.87568 -30.23177 -29.07729 -27.50306 -26.32989 -24.81562 -24.50102 -22.96309 -22.69090 -21.33899 -20.63350 -19.77924 -19.67525 -19.27634 -18.49289 -18.12803 -17.71961 -17.09335 -16.96979 -16.66379 -16.32773 -16.13631 -15.79888 -15.61018 -15.45333 -15.28930 -14.96542 -14.83984 -14.65860 -14.46566 -14.38295 -14.29765 -14.19982 -13.83482 -13.49151 -13.28942 -13.19598 -12.92954 -12.49227 -12.40591 -12.11521 -12.10150 -11.79759 -11.67900 -11.61501 -11.29605 -10.98054 -10.92698 -10.69355 -10.37474 -9.67378 -9.31893 -8.00828 -5.33674 0.15849 0.66843 0.97018 1.38467 1.40844 1.49600 1.68610 2.13311 2.49881 2.53380 2.67925 2.76859 3.28369 3.31497 3.40448 3.50593 3.67567 3.84506 3.89071 3.92115 4.00008 4.09374 4.24691 4.34937 4.39344 4.52302 4.56762 4.60959 4.66065 4.75886 4.80967 4.92525 5.04605 5.06522 5.22893 5.33909 5.50441 5.59044 5.78151 6.10680 6.16428 6.24692 6.51024 6.89517 7.09055 7.85108 8.05657 9.20649 Molecular weight = 344.14amu Principal moments of inertia in cm(-1) A = 0.018572 B = 0.002591 C = 0.002443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.244589 B =10805.724804 C =11457.394826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.181 3.819 3 H 0.063 0.937 4 N -0.747 5.747 5 C -0.226 4.226 6 H 0.060 0.940 7 C -0.064 4.064 8 N -0.984 5.984 9 Si 0.952 3.048 10 H -0.279 1.279 11 H -0.295 1.295 12 H -0.255 1.255 13 C 0.087 3.913 14 H 0.051 0.949 15 C 0.091 3.909 16 N -0.600 5.600 17 C 0.596 3.404 18 O -0.563 6.563 19 C -0.012 4.012 20 C -0.187 4.187 21 C 0.029 3.971 22 N -0.351 5.351 23 C 0.498 3.502 24 F -0.181 7.181 25 F -0.173 7.173 26 N -0.258 5.258 27 C 0.049 3.951 28 C 0.044 3.956 29 O -0.382 6.382 30 H 0.071 0.929 31 H 0.053 0.947 32 H 0.035 0.965 33 H 0.367 0.633 34 H 0.257 0.743 35 H 0.095 0.905 36 H 0.094 0.906 37 H 0.175 0.825 38 H 0.233 0.767 39 H 0.216 0.784 40 H 0.081 0.919 41 H 0.152 0.848 42 H 0.129 0.871 43 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.191 -12.653 -34.507 36.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.073 3.927 3 H 0.081 0.919 4 N -0.391 5.391 5 C -0.357 4.357 6 H 0.078 0.922 7 C -0.255 4.255 8 N -0.635 5.635 9 Si 0.780 3.220 10 H -0.206 1.206 11 H -0.222 1.222 12 H -0.179 1.179 13 C 0.028 3.972 14 H 0.069 0.931 15 C -0.032 4.032 16 N -0.332 5.332 17 C 0.383 3.617 18 O -0.441 6.441 19 C -0.173 4.173 20 C -0.214 4.214 21 C -0.112 4.112 22 N -0.148 5.148 23 C 0.368 3.632 24 F -0.163 7.163 25 F -0.155 7.155 26 N -0.092 5.092 27 C -0.073 4.073 28 C -0.033 4.033 29 O -0.301 6.301 30 H 0.090 0.910 31 H 0.072 0.928 32 H 0.054 0.946 33 H 0.200 0.800 34 H 0.066 0.934 35 H 0.113 0.887 36 H 0.112 0.888 37 H 0.193 0.807 38 H 0.250 0.750 39 H 0.232 0.768 40 H 0.100 0.900 41 H 0.168 0.832 42 H 0.147 0.853 43 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 1.527 -12.967 -33.897 36.324 hybrid contribution 0.642 0.098 0.200 0.680 sum 2.169 -12.870 -33.697 36.136 Atomic orbital electron populations 1.22208 0.96577 1.01592 1.00646 1.20381 0.94013 0.94724 0.83605 0.91897 1.42703 1.79893 1.09576 1.06898 1.19054 1.34894 0.94376 0.87385 0.92172 1.25448 1.02507 1.02401 0.95194 1.69878 1.54812 1.37584 1.01204 0.85440 0.78488 0.81168 0.76938 1.20565 1.22188 1.17936 1.22610 0.96586 0.83845 0.94168 0.93061 1.22334 1.02697 0.95169 0.83001 1.48080 1.53130 1.14170 1.17830 1.17346 0.77293 0.85896 0.81119 1.90785 1.57312 1.16783 1.79186 1.21944 1.04511 0.91699 0.99130 1.22110 1.03206 1.01774 0.94334 1.23455 0.99070 0.86611 1.02048 1.47380 1.36116 1.13992 1.17318 1.22415 0.85872 0.79576 0.75343 1.93142 1.45202 1.86692 1.91231 1.93163 1.96355 1.95684 1.30271 1.73071 1.20084 1.12115 1.03978 1.23460 1.01717 0.80380 1.01783 1.23175 0.99478 0.95809 0.84862 1.88021 1.67995 1.25673 1.48429 0.90991 0.92835 0.94587 0.79983 0.93400 0.88741 0.88764 0.80732 0.75025 0.76764 0.90039 0.83205 0.85302 0.93208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.38 9.06 71.98 0.65 -4.73 16 2 C 0.18 7.10 2.77 44.99 0.12 7.22 16 3 H 0.06 2.53 8.08 -2.39 -0.02 2.51 16 4 N -0.75 -36.27 4.91 -322.94 -1.58 -37.85 16 5 C -0.23 -13.18 10.41 84.03 0.87 -12.31 16 6 H 0.06 3.80 8.06 -2.91 -0.02 3.78 16 7 C -0.06 -3.88 5.50 84.86 0.47 -3.42 16 8 N -0.98 -64.30 13.97 21.65 0.30 -64.00 16 9 Si 0.95 47.05 27.73 68.60 1.90 48.95 16 10 H -0.28 -13.42 7.11 99.48 0.71 -12.72 16 11 H -0.30 -14.65 7.11 99.48 0.71 -13.95 16 12 H -0.25 -11.66 6.52 99.48 0.65 -11.02 16 13 C 0.09 2.86 2.61 30.69 0.08 2.94 16 14 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 15 C 0.09 2.60 5.81 86.35 0.50 3.11 16 16 N -0.60 -15.84 3.02 -820.88 -2.48 -18.31 16 17 C 0.60 16.74 7.71 86.75 0.67 17.41 16 18 O -0.56 -19.27 16.42 -3.94 -0.06 -19.33 16 19 C -0.01 -0.26 6.90 42.45 0.29 0.03 16 20 C -0.19 -2.95 10.81 22.41 0.24 -2.71 16 21 C 0.03 0.24 10.98 83.54 0.92 1.16 16 22 N -0.35 -3.69 3.68 -364.70 -1.34 -5.03 16 23 C 0.50 1.85 6.56 127.77 0.84 2.69 16 24 F -0.18 -1.75 17.26 44.97 0.78 -0.98 16 25 F -0.17 -0.76 16.96 44.97 0.76 0.00 16 26 N -0.26 -4.45 8.08 -48.18 -0.39 -4.84 16 27 C 0.05 1.05 6.50 86.35 0.56 1.61 16 28 C 0.04 1.00 6.98 72.08 0.50 1.50 16 29 O -0.38 -11.95 9.24 -148.98 -1.38 -13.33 16 30 H 0.07 2.07 6.42 -2.39 -0.02 2.06 16 31 H 0.05 1.94 7.56 -2.39 -0.02 1.92 16 32 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.37 17.55 5.45 -92.71 -0.51 17.05 16 34 H 0.26 16.01 8.31 -92.71 -0.77 15.24 16 35 H 0.09 2.50 6.27 -2.39 -0.01 2.49 16 36 H 0.09 2.88 7.11 -2.39 -0.02 2.86 16 37 H 0.18 2.51 8.06 -2.91 -0.02 2.49 16 38 H 0.23 -0.13 8.06 -2.91 -0.02 -0.16 16 39 H 0.22 -1.30 8.14 -2.39 -0.02 -1.32 16 40 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 41 H 0.15 2.84 3.86 -67.70 -0.26 2.58 16 42 H 0.13 2.24 8.14 -2.39 -0.02 2.22 16 43 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 Total: -1.00 -81.72 360.70 3.49 -78.24 By element: Atomic # 1 Polarization: 21.72 SS G_CDS: 0.25 Total: 21.97 kcal Atomic # 6 Polarization: 7.80 SS G_CDS: 6.72 Total: 14.52 kcal Atomic # 7 Polarization: -124.55 SS G_CDS: -5.49 Total: -130.04 kcal Atomic # 8 Polarization: -31.22 SS G_CDS: -1.44 Total: -32.66 kcal Atomic # 9 Polarization: -2.52 SS G_CDS: 1.54 Total: -0.98 kcal Atomic # 14 Polarization: 47.05 SS G_CDS: 1.90 Total: 48.95 kcal Total: -81.72 3.49 -78.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755442147.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.559 kcal (2) G-P(sol) polarization free energy of solvation -81.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds