Wall clock time and date at job start Wed Apr 1 2020 03:15:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.45751 * 117.94649 * 2 1 4 4 C 1.52925 * 110.48732 * 160.92636 * 3 2 1 5 5 H 1.08997 * 109.73499 * 290.91687 * 4 3 2 6 6 N 1.46492 * 109.60350 * 170.50730 * 4 3 2 7 7 C 1.34774 * 120.00150 * 85.81255 * 6 4 3 8 8 O 1.21723 * 120.00004 * 359.97438 * 7 6 4 9 9 C 1.46254 * 120.00136 * 179.97438 * 7 6 4 10 10 C 1.35027 * 119.99911 * 180.02562 * 9 7 6 11 11 C 1.46968 * 119.99954 * 180.02562 * 10 9 7 12 12 C 1.40020 * 120.09782 * 179.97438 * 11 10 9 13 13 C 1.37604 * 119.89470 * 180.02562 * 12 11 10 14 14 C 1.39178 * 120.10031 * 359.97438 * 13 12 11 15 15 O 1.35570 * 119.89454 * 179.97438 * 14 13 12 16 16 C 1.34777 * 117.00110 * 5.55097 * 15 14 13 17 17 H 1.08001 * 120.00448 * 354.94984 * 16 15 14 18 18 C 1.38720 * 119.99613 * 174.94281 * 16 15 14 19 19 N 1.31510 * 120.00450 * 0.27601 * 18 16 15 20 20 Si 1.86806 * 119.99829 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.46971 * 59.99978 * 20 18 16 22 22 H 1.48502 * 109.47209 * 179.97438 * 20 18 16 23 23 H 1.48502 * 109.47106 * 299.99891 * 20 18 16 24 24 C 1.39177 * 120.20173 * 0.25990 * 14 13 12 25 25 C 1.37599 * 120.10204 * 359.47998 * 24 14 13 26 26 C 1.53340 * 108.67504 * 50.74963 * 4 3 2 27 27 C 1.53070 * 108.42644 * 292.47160 * 26 4 3 28 28 C 1.33361 * 117.94476 * 179.97438 * 2 1 3 29 29 O 1.21279 * 118.24502 * 2.24516 * 28 2 1 30 30 H 1.09002 * 109.47480 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47228 * 300.00371 * 1 2 3 32 32 H 1.09001 * 109.47304 * 60.00509 * 1 2 3 33 33 H 1.08995 * 109.30138 * 40.61502 * 3 2 1 34 34 H 1.08996 * 109.29621 * 281.23140 * 3 2 1 35 35 H 0.97000 * 120.00218 * 265.81106 * 6 4 3 36 36 H 1.08000 * 120.00453 * 0.02562 * 9 7 6 37 37 H 1.08000 * 120.00216 * 359.97438 * 10 9 7 38 38 H 1.07998 * 120.05439 * 0.04507 * 12 11 10 39 39 H 1.08000 * 119.94774 * 180.02562 * 13 12 11 40 40 H 0.97003 * 119.99391 * 359.73106 * 19 18 16 41 41 H 1.07998 * 119.94377 * 179.74615 * 24 14 13 42 42 H 1.08001 * 120.05177 * 180.27834 * 25 24 14 43 43 H 1.09001 * 109.67655 * 52.20283 * 26 4 3 44 44 H 1.09001 * 109.67722 * 172.73688 * 26 4 3 45 45 H 1.09007 * 109.40308 * 169.03080 * 27 26 4 46 46 H 1.09003 * 109.39910 * 288.77195 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1480 1.2875 0.0000 4 6 3.5949 1.1259 0.4681 5 1 3.6127 0.8739 1.5284 6 7 4.3254 2.3764 0.2478 7 6 4.2877 3.3516 1.1773 8 8 3.6463 3.1935 2.1997 9 6 5.0175 4.5999 0.9576 10 6 4.9802 5.5767 1.8891 11 6 5.7131 6.8312 1.6681 12 6 5.6753 7.8457 2.6324 13 6 6.3626 9.0189 2.4209 14 6 7.0949 9.1977 1.2509 15 8 7.7701 10.3554 1.0466 16 6 7.7853 11.2422 2.0615 17 1 7.2074 11.0517 2.9538 18 6 8.5433 12.3995 1.9599 19 7 9.2429 12.6340 0.8713 20 14 8.5650 13.6283 3.3668 21 1 9.0807 12.9679 4.5928 22 1 9.4453 14.7706 3.0127 23 1 7.1866 14.1227 3.6133 24 6 7.1313 8.1939 0.2875 25 6 6.4514 7.0154 0.4927 26 6 4.2492 -0.0014 -0.3396 27 6 3.5838 -1.3240 0.0486 28 6 2.0899 -1.1781 0.0005 29 8 1.4158 -2.1854 -0.0409 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3634 0.5138 -0.8900 33 1 1.6271 1.9718 0.6696 34 1 2.1398 1.6996 -1.0090 35 1 4.8362 2.5026 -0.5671 36 1 5.5863 4.7404 0.0503 37 1 4.4111 5.4364 2.7962 38 1 5.1080 7.7076 3.5409 39 1 6.3345 9.8018 3.1643 40 1 9.2318 11.9958 0.1409 41 1 7.6975 8.3387 -0.6207 42 1 6.4839 6.2352 -0.2534 43 1 4.1087 0.1812 -1.4050 44 1 5.3142 -0.0457 -0.1118 45 1 3.8942 -2.1036 -0.6472 46 1 3.8880 -1.5997 1.0584 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000133972784.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:15:31 Heat of formation + Delta-G solvation = -62.845224 kcal Electronic energy + Delta-G solvation = -27897.975113 eV Core-core repulsion = 23753.307454 eV Total energy + Delta-G solvation = -4144.667658 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.05262 -39.71561 -39.29623 -37.27948 -36.89122 -35.08417 -33.42665 -33.21378 -32.30392 -30.55774 -29.53402 -28.17326 -27.38942 -25.39164 -24.89282 -23.61517 -22.38376 -22.09279 -20.93443 -19.76462 -19.11036 -18.47353 -17.36387 -17.30243 -16.97098 -16.84745 -16.55488 -15.60053 -15.20624 -14.99472 -14.96540 -14.56457 -14.27971 -14.19783 -14.02326 -13.94651 -13.80145 -13.70701 -13.27911 -13.07198 -12.79251 -12.72837 -12.38875 -12.23401 -12.11285 -11.93103 -11.86311 -11.43643 -11.26718 -11.14438 -11.04037 -10.48806 -10.41618 -10.12801 -9.98887 -9.72058 -9.63313 -9.45699 -9.13931 -8.87246 -8.51409 -7.26271 -7.02728 -4.28433 0.91675 2.00410 2.22367 2.38805 2.48689 3.00531 3.12476 3.16015 3.33319 3.40361 3.92661 4.05537 4.11896 4.20600 4.41259 4.41707 4.71296 4.78606 4.79478 4.88088 4.95164 4.98581 5.07800 5.11630 5.13463 5.21327 5.27462 5.39310 5.42119 5.46205 5.50806 5.53947 5.60579 5.89054 5.90591 5.97729 6.10560 6.31116 6.34093 6.47534 6.64642 6.86506 6.99562 7.02811 7.11437 7.32062 7.34677 7.47023 7.72727 8.12942 8.13776 8.62952 9.29829 10.40168 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.037589 B = 0.001476 C = 0.001453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.716868 B =18968.371318 C =19267.189799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.603 5.603 3 C 0.102 3.898 4 C 0.134 3.866 5 H 0.098 0.902 6 N -0.727 5.727 7 C 0.558 3.442 8 O -0.554 6.554 9 C -0.286 4.286 10 C 0.042 3.958 11 C -0.199 4.199 12 C -0.034 4.034 13 C -0.239 4.239 14 C 0.169 3.831 15 O -0.186 6.186 16 C -0.471 4.471 17 H 0.090 0.910 18 C 0.014 3.986 19 N -0.866 5.866 20 Si 1.096 2.904 21 H -0.279 1.279 22 H -0.271 1.271 23 H -0.279 1.279 24 C -0.202 4.202 25 C -0.041 4.041 26 C -0.133 4.133 27 C -0.129 4.129 28 C 0.514 3.486 29 O -0.556 6.556 30 H 0.092 0.908 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.084 0.916 34 H 0.070 0.930 35 H 0.404 0.596 36 H 0.124 0.876 37 H 0.124 0.876 38 H 0.115 0.885 39 H 0.133 0.867 40 H 0.285 0.715 41 H 0.119 0.881 42 H 0.119 0.881 43 H 0.078 0.922 44 H 0.088 0.912 45 H 0.107 0.893 46 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.871 -20.769 -3.108 23.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.336 5.336 3 C -0.023 4.023 4 C 0.028 3.972 5 H 0.116 0.884 6 N -0.379 5.379 7 C 0.351 3.649 8 O -0.434 6.434 9 C -0.307 4.307 10 C 0.023 3.977 11 C -0.201 4.201 12 C -0.052 4.052 13 C -0.258 4.258 14 C 0.113 3.887 15 O -0.088 6.088 16 C -0.546 4.546 17 H 0.107 0.893 18 C -0.194 4.194 19 N -0.496 5.496 20 Si 0.919 3.081 21 H -0.205 1.205 22 H -0.196 1.196 23 H -0.204 1.204 24 C -0.222 4.222 25 C -0.060 4.060 26 C -0.171 4.171 27 C -0.169 4.169 28 C 0.303 3.697 29 O -0.435 6.435 30 H 0.111 0.889 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.102 0.898 34 H 0.088 0.912 35 H 0.239 0.761 36 H 0.142 0.858 37 H 0.141 0.859 38 H 0.133 0.867 39 H 0.150 0.850 40 H 0.095 0.905 41 H 0.137 0.863 42 H 0.137 0.863 43 H 0.097 0.903 44 H 0.107 0.893 45 H 0.125 0.875 46 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -9.833 -19.764 -2.138 22.178 hybrid contribution -0.470 -1.277 -0.887 1.624 sum -10.303 -21.041 -3.025 23.622 Atomic orbital electron populations 1.21807 0.79240 1.04715 1.01629 1.47108 1.07746 1.05860 1.72856 1.21847 0.93480 0.84656 1.02282 1.21042 0.90019 0.84443 1.01706 0.88362 1.45766 1.52806 1.16071 1.23228 1.18469 0.80214 0.83840 0.82382 1.90796 1.43869 1.81068 1.27693 1.22385 1.09811 0.94870 1.03602 1.22304 0.89358 0.90042 0.96031 1.18464 1.07928 0.95596 0.98065 1.21012 0.95334 0.92041 0.96839 1.21117 1.04674 0.99825 1.00156 1.19468 0.90429 0.85883 0.92923 1.83589 1.61787 1.22747 1.40643 1.22388 1.33285 1.01775 0.97142 0.89259 1.26708 0.92485 0.97004 1.03174 1.70570 1.35642 1.37897 1.05493 0.83102 0.77341 0.75109 0.72550 1.20451 1.19558 1.20447 1.20131 1.07641 0.93686 1.00703 1.20868 0.93963 0.95615 0.95531 1.21980 1.01266 0.93028 1.00798 1.21587 0.90815 0.99075 1.05448 1.20218 0.91071 0.82778 0.75668 1.90709 1.66359 1.35727 1.50725 0.88897 0.91943 0.92071 0.89758 0.91208 0.76122 0.85782 0.85852 0.86669 0.84988 0.90521 0.86272 0.86309 0.90349 0.89348 0.87456 0.87762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.52 10.47 59.85 0.63 1.15 16 2 N -0.60 -5.11 3.21 -182.86 -0.59 -5.70 16 3 C 0.10 0.76 5.99 -4.48 -0.03 0.73 16 4 C 0.13 0.96 2.53 -67.80 -0.17 0.79 16 5 H 0.10 0.91 7.56 -51.93 -0.39 0.52 16 6 N -0.73 -5.57 5.08 -55.12 -0.28 -5.85 16 7 C 0.56 6.51 7.71 -13.04 -0.10 6.41 16 8 O -0.55 -8.43 15.89 5.17 0.08 -8.35 16 9 C -0.29 -3.36 9.41 -37.50 -0.35 -3.71 16 10 C 0.04 0.58 9.45 -37.19 -0.35 0.23 16 11 C -0.20 -3.18 5.87 -105.03 -0.62 -3.79 16 12 C -0.03 -0.58 9.78 -39.15 -0.38 -0.96 16 13 C -0.24 -4.81 9.14 -39.46 -0.36 -5.18 16 14 C 0.17 3.76 6.66 -38.88 -0.26 3.50 16 15 O -0.19 -4.86 9.15 0.75 0.01 -4.86 16 16 C -0.47 -12.35 9.48 30.91 0.29 -12.05 16 17 H 0.09 2.18 5.18 -52.49 -0.27 1.91 16 18 C 0.01 0.36 5.49 -17.51 -0.10 0.26 16 19 N -0.87 -24.30 13.70 55.48 0.76 -23.54 16 20 Si 1.10 22.05 29.92 -169.99 -5.09 16.96 16 21 H -0.28 -5.28 7.11 56.52 0.40 -4.88 16 22 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 23 H -0.28 -5.27 7.11 56.52 0.40 -4.87 16 24 C -0.20 -3.84 9.97 -39.47 -0.39 -4.23 16 25 C -0.04 -0.66 9.40 -39.15 -0.37 -1.03 16 26 C -0.13 -0.63 5.51 -26.52 -0.15 -0.78 16 27 C -0.13 -0.78 6.03 -28.10 -0.17 -0.95 16 28 C 0.51 4.92 7.47 -11.87 -0.09 4.83 16 29 O -0.56 -7.36 15.95 5.56 0.09 -7.27 16 30 H 0.09 0.83 6.59 -51.93 -0.34 0.48 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.08 0.75 8.10 -51.93 -0.42 0.32 16 34 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 35 H 0.40 2.03 8.59 -40.82 -0.35 1.68 16 36 H 0.12 1.21 6.06 -52.49 -0.32 0.89 16 37 H 0.12 1.70 7.52 -52.49 -0.39 1.30 16 38 H 0.12 1.65 8.06 -52.49 -0.42 1.22 16 39 H 0.13 2.68 5.62 -52.49 -0.29 2.38 16 40 H 0.28 8.13 7.97 -40.82 -0.33 7.81 16 41 H 0.12 2.12 8.06 -52.49 -0.42 1.70 16 42 H 0.12 1.48 6.16 -52.49 -0.32 1.16 16 43 H 0.08 0.31 8.13 -51.93 -0.42 -0.12 16 44 H 0.09 0.34 8.14 -51.93 -0.42 -0.09 16 45 H 0.11 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 387.04 15.07 5.83 5.83 Total: -1.00 -32.74 387.04 -8.18 -40.93 By element: Atomic # 1 Polarization: 12.65 SS G_CDS: -6.03 Total: 6.62 kcal Atomic # 6 Polarization: -11.81 SS G_CDS: -2.96 Total: -14.77 kcal Atomic # 7 Polarization: -34.99 SS G_CDS: -0.11 Total: -35.10 kcal Atomic # 8 Polarization: -20.65 SS G_CDS: 0.18 Total: -20.47 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.09 Total: 16.96 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -32.74 -8.18 -40.93 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133972784.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.919 kcal (2) G-P(sol) polarization free energy of solvation -32.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds