Wall clock time and date at job start Wed Apr 1 2020 03:15:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.45751 * 117.94649 * 2 1 4 4 C 1.52925 * 110.48732 * 160.92636 * 3 2 1 5 5 H 1.08997 * 109.73499 * 290.91687 * 4 3 2 6 6 N 1.46492 * 109.60350 * 170.50730 * 4 3 2 7 7 C 1.34774 * 120.00150 * 85.81255 * 6 4 3 8 8 O 1.21723 * 120.00004 * 359.97438 * 7 6 4 9 9 C 1.46254 * 120.00136 * 179.97438 * 7 6 4 10 10 C 1.35027 * 119.99911 * 180.02562 * 9 7 6 11 11 C 1.46968 * 119.99954 * 180.02562 * 10 9 7 12 12 C 1.40020 * 120.09782 * 179.97438 * 11 10 9 13 13 C 1.37604 * 119.89470 * 180.02562 * 12 11 10 14 14 C 1.39178 * 120.10031 * 359.97438 * 13 12 11 15 15 O 1.35570 * 119.89454 * 179.97438 * 14 13 12 16 16 C 1.34777 * 117.00110 * 5.55097 * 15 14 13 17 17 H 1.08001 * 120.00448 * 354.94984 * 16 15 14 18 18 C 1.38720 * 119.99613 * 174.94281 * 16 15 14 19 19 N 1.31510 * 120.00450 * 0.27601 * 18 16 15 20 20 Si 1.86806 * 119.99829 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.46971 * 59.99978 * 20 18 16 22 22 H 1.48502 * 109.47209 * 179.97438 * 20 18 16 23 23 H 1.48502 * 109.47106 * 299.99891 * 20 18 16 24 24 C 1.39177 * 120.20173 * 0.25990 * 14 13 12 25 25 C 1.37599 * 120.10204 * 359.47998 * 24 14 13 26 26 C 1.53340 * 108.67504 * 50.74963 * 4 3 2 27 27 C 1.53070 * 108.42644 * 292.47160 * 26 4 3 28 28 C 1.33361 * 117.94476 * 179.97438 * 2 1 3 29 29 O 1.21279 * 118.24502 * 2.24516 * 28 2 1 30 30 H 1.09002 * 109.47480 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47228 * 300.00371 * 1 2 3 32 32 H 1.09001 * 109.47304 * 60.00509 * 1 2 3 33 33 H 1.08995 * 109.30138 * 40.61502 * 3 2 1 34 34 H 1.08996 * 109.29621 * 281.23140 * 3 2 1 35 35 H 0.97000 * 120.00218 * 265.81106 * 6 4 3 36 36 H 1.08000 * 120.00453 * 0.02562 * 9 7 6 37 37 H 1.08000 * 120.00216 * 359.97438 * 10 9 7 38 38 H 1.07998 * 120.05439 * 0.04507 * 12 11 10 39 39 H 1.08000 * 119.94774 * 180.02562 * 13 12 11 40 40 H 0.97003 * 119.99391 * 359.73106 * 19 18 16 41 41 H 1.07998 * 119.94377 * 179.74615 * 24 14 13 42 42 H 1.08001 * 120.05177 * 180.27834 * 25 24 14 43 43 H 1.09001 * 109.67655 * 52.20283 * 26 4 3 44 44 H 1.09001 * 109.67722 * 172.73688 * 26 4 3 45 45 H 1.09007 * 109.40308 * 169.03080 * 27 26 4 46 46 H 1.09003 * 109.39910 * 288.77195 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1480 1.2875 0.0000 4 6 3.5949 1.1259 0.4681 5 1 3.6127 0.8739 1.5284 6 7 4.3254 2.3764 0.2478 7 6 4.2877 3.3516 1.1773 8 8 3.6463 3.1935 2.1997 9 6 5.0175 4.5999 0.9576 10 6 4.9802 5.5767 1.8891 11 6 5.7131 6.8312 1.6681 12 6 5.6753 7.8457 2.6324 13 6 6.3626 9.0189 2.4209 14 6 7.0949 9.1977 1.2509 15 8 7.7701 10.3554 1.0466 16 6 7.7853 11.2422 2.0615 17 1 7.2074 11.0517 2.9538 18 6 8.5433 12.3995 1.9599 19 7 9.2429 12.6340 0.8713 20 14 8.5650 13.6283 3.3668 21 1 9.0807 12.9679 4.5928 22 1 9.4453 14.7706 3.0127 23 1 7.1866 14.1227 3.6133 24 6 7.1313 8.1939 0.2875 25 6 6.4514 7.0154 0.4927 26 6 4.2492 -0.0014 -0.3396 27 6 3.5838 -1.3240 0.0486 28 6 2.0899 -1.1781 0.0005 29 8 1.4158 -2.1854 -0.0409 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3634 0.5138 -0.8900 33 1 1.6271 1.9718 0.6696 34 1 2.1398 1.6996 -1.0090 35 1 4.8362 2.5026 -0.5671 36 1 5.5863 4.7404 0.0503 37 1 4.4111 5.4364 2.7962 38 1 5.1080 7.7076 3.5409 39 1 6.3345 9.8018 3.1643 40 1 9.2318 11.9958 0.1409 41 1 7.6975 8.3387 -0.6207 42 1 6.4839 6.2352 -0.2534 43 1 4.1087 0.1812 -1.4050 44 1 5.3142 -0.0457 -0.1118 45 1 3.8942 -2.1036 -0.6472 46 1 3.8880 -1.5997 1.0584 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000133972784.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:15:30 Heat of formation + Delta-G solvation = -84.872218 kcal Electronic energy + Delta-G solvation = -27898.930275 eV Core-core repulsion = 23753.307454 eV Total energy + Delta-G solvation = -4145.622821 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.75134 -40.97998 -40.53555 -38.66424 -37.82013 -35.79610 -34.82197 -34.07091 -33.79362 -32.01874 -30.41758 -29.29582 -28.06946 -27.12186 -25.62321 -24.64242 -23.72131 -23.05720 -22.05934 -20.92193 -20.20323 -19.61997 -18.77825 -18.26866 -17.90514 -17.58272 -17.28619 -16.91581 -16.27004 -16.22417 -15.83102 -15.74922 -15.69366 -15.40015 -15.21188 -15.07217 -14.84247 -14.60445 -14.36430 -14.16122 -13.67861 -13.45805 -13.38178 -13.31753 -13.02140 -12.84959 -12.68973 -12.65535 -12.55786 -12.44512 -12.07776 -11.93898 -11.89703 -11.29805 -11.09516 -11.01281 -10.85838 -10.57948 -10.21288 -9.94826 -9.83042 -8.98349 -8.73790 -6.27095 -0.27849 0.52469 1.10395 1.49995 1.51845 1.61876 1.79044 1.80522 2.27772 2.33101 2.36311 2.87903 3.12481 3.26847 3.50240 3.57714 3.63404 3.80010 3.90375 3.95782 4.03221 4.20154 4.29752 4.34269 4.34883 4.39912 4.43513 4.50532 4.55546 4.61009 4.71724 4.82972 4.86452 4.88511 5.00307 5.06320 5.10301 5.17286 5.25345 5.28445 5.30743 5.41633 5.56063 5.64969 5.78735 5.96419 6.22949 6.33183 6.59253 6.80281 7.02939 7.27338 7.54589 8.46359 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.037589 B = 0.001476 C = 0.001453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.716868 B =18968.371318 C =19267.189799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.603 5.603 3 C 0.105 3.895 4 C 0.134 3.866 5 H 0.078 0.922 6 N -0.703 5.703 7 C 0.554 3.446 8 O -0.589 6.589 9 C -0.239 4.239 10 C 0.012 3.988 11 C -0.165 4.165 12 C -0.043 4.043 13 C -0.248 4.248 14 C 0.129 3.871 15 O -0.241 6.241 16 C -0.490 4.490 17 H 0.095 0.905 18 C -0.040 4.040 19 N -0.911 5.911 20 Si 1.143 2.857 21 H -0.260 1.260 22 H -0.274 1.274 23 H -0.260 1.260 24 C -0.207 4.207 25 C -0.036 4.036 26 C -0.120 4.120 27 C -0.124 4.124 28 C 0.505 3.495 29 O -0.601 6.601 30 H 0.075 0.925 31 H 0.068 0.932 32 H 0.078 0.922 33 H 0.069 0.931 34 H 0.089 0.911 35 H 0.423 0.577 36 H 0.156 0.844 37 H 0.124 0.876 38 H 0.144 0.856 39 H 0.121 0.879 40 H 0.263 0.737 41 H 0.125 0.875 42 H 0.167 0.833 43 H 0.096 0.904 44 H 0.108 0.892 45 H 0.121 0.879 46 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.854 -24.076 -3.655 26.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.335 5.335 3 C -0.019 4.019 4 C 0.028 3.972 5 H 0.096 0.904 6 N -0.355 5.355 7 C 0.346 3.654 8 O -0.472 6.472 9 C -0.259 4.259 10 C -0.008 4.008 11 C -0.166 4.166 12 C -0.061 4.061 13 C -0.267 4.267 14 C 0.078 3.922 15 O -0.147 6.147 16 C -0.566 4.566 17 H 0.112 0.888 18 C -0.237 4.237 19 N -0.545 5.545 20 Si 0.959 3.041 21 H -0.185 1.185 22 H -0.199 1.199 23 H -0.184 1.184 24 C -0.226 4.226 25 C -0.054 4.054 26 C -0.158 4.158 27 C -0.164 4.164 28 C 0.295 3.705 29 O -0.484 6.484 30 H 0.094 0.906 31 H 0.086 0.914 32 H 0.096 0.904 33 H 0.088 0.912 34 H 0.107 0.893 35 H 0.261 0.739 36 H 0.174 0.826 37 H 0.142 0.858 38 H 0.162 0.838 39 H 0.139 0.861 40 H 0.071 0.929 41 H 0.143 0.857 42 H 0.184 0.816 43 H 0.114 0.886 44 H 0.126 0.874 45 H 0.139 0.861 46 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -10.848 -23.139 -2.710 25.699 hybrid contribution -0.543 -0.981 -0.778 1.365 sum -11.391 -24.120 -3.489 26.901 Atomic orbital electron populations 1.21857 0.79132 1.03955 1.02786 1.47229 1.08138 1.06119 1.72027 1.21851 0.93328 0.83804 1.02946 1.21063 0.90149 0.84826 1.01182 0.90380 1.45566 1.51825 1.15198 1.22913 1.18523 0.79948 0.84479 0.82489 1.90812 1.45239 1.81700 1.29413 1.22782 1.06459 0.93535 1.03151 1.22162 0.91292 0.89825 0.97540 1.18821 1.05247 0.95621 0.96868 1.21339 0.95131 0.91110 0.98496 1.21217 1.05100 1.00926 0.99477 1.20106 0.91093 0.86179 0.94814 1.83585 1.65230 1.24577 1.41333 1.22651 1.33734 1.02439 0.97745 0.88781 1.28364 0.91748 0.98921 1.04663 1.70701 1.39245 1.38084 1.06432 0.82601 0.78261 0.72968 0.70303 1.18480 1.19864 1.18445 1.20457 1.07878 0.93985 1.00245 1.21332 0.92377 0.95306 0.96388 1.21937 1.01795 0.90800 1.01237 1.21620 0.88143 1.00358 1.06320 1.20924 0.92530 0.82299 0.74756 1.90691 1.67617 1.37147 1.52924 0.90593 0.91358 0.90351 0.91237 0.89328 0.73903 0.82613 0.85814 0.83834 0.86132 0.92877 0.85726 0.81605 0.88572 0.87393 0.86125 0.87146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.91 10.47 127.77 1.34 2.25 16 2 N -0.60 -9.01 3.21 -851.63 -2.73 -11.74 16 3 C 0.10 1.22 5.99 86.50 0.52 1.74 16 4 C 0.13 1.38 2.53 45.08 0.11 1.50 16 5 H 0.08 1.21 7.56 -2.39 -0.02 1.19 16 6 N -0.70 -6.97 5.08 -446.51 -2.27 -9.24 16 7 C 0.55 10.20 7.71 86.33 0.67 10.86 16 8 O -0.59 -15.95 15.89 -4.42 -0.07 -16.02 16 9 C -0.24 -4.17 9.41 23.62 0.22 -3.95 16 10 C 0.01 0.27 9.45 23.82 0.23 0.49 16 11 C -0.16 -4.63 5.87 -20.13 -0.12 -4.75 16 12 C -0.04 -1.38 9.78 22.55 0.22 -1.16 16 13 C -0.25 -10.17 9.14 22.35 0.20 -9.97 16 14 C 0.13 5.95 6.66 22.72 0.15 6.11 16 15 O -0.24 -13.53 9.15 -20.22 -0.18 -13.72 16 16 C -0.49 -27.41 9.48 67.94 0.64 -26.77 16 17 H 0.09 4.89 5.18 -2.91 -0.02 4.87 16 18 C -0.04 -2.18 5.49 84.86 0.47 -1.72 16 19 N -0.91 -54.86 13.70 21.62 0.30 -54.57 16 20 Si 1.14 46.13 29.92 68.60 2.05 48.18 16 21 H -0.26 -9.54 7.11 99.48 0.71 -8.83 16 22 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 23 H -0.26 -9.52 7.11 99.48 0.71 -8.81 16 24 C -0.21 -7.67 9.97 22.34 0.22 -7.44 16 25 C -0.04 -1.02 9.40 22.55 0.21 -0.80 16 26 C -0.12 -0.56 5.51 30.73 0.17 -0.39 16 27 C -0.12 -1.10 6.03 29.71 0.18 -0.92 16 28 C 0.50 8.78 7.47 87.71 0.66 9.43 16 29 O -0.60 -15.63 15.95 -3.02 -0.05 -15.68 16 30 H 0.08 1.35 6.59 -2.39 -0.02 1.33 16 31 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.07 1.05 8.10 -2.39 -0.02 1.03 16 34 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.42 1.38 8.59 -92.71 -0.80 0.58 16 36 H 0.16 1.77 6.06 -2.91 -0.02 1.75 16 37 H 0.12 2.94 7.52 -2.91 -0.02 2.92 16 38 H 0.14 3.75 8.06 -2.91 -0.02 3.73 16 39 H 0.12 5.12 5.62 -2.91 -0.02 5.10 16 40 H 0.26 16.41 7.97 -92.71 -0.74 15.67 16 41 H 0.12 4.41 8.06 -2.91 -0.02 4.38 16 42 H 0.17 3.01 6.16 -2.91 -0.02 3.00 16 43 H 0.10 0.19 8.13 -2.39 -0.02 0.17 16 44 H 0.11 0.19 8.14 -2.39 -0.02 0.17 16 45 H 0.12 0.81 8.14 -2.38 -0.02 0.79 16 46 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 Total: -1.00 -79.73 387.04 3.39 -76.34 By element: Atomic # 1 Polarization: 21.69 SS G_CDS: 0.26 Total: 21.95 kcal Atomic # 6 Polarization: -31.58 SS G_CDS: 6.09 Total: -25.49 kcal Atomic # 7 Polarization: -70.85 SS G_CDS: -4.71 Total: -75.55 kcal Atomic # 8 Polarization: -45.11 SS G_CDS: -0.30 Total: -45.42 kcal Atomic # 14 Polarization: 46.13 SS G_CDS: 2.05 Total: 48.18 kcal Total: -79.73 3.39 -76.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133972784.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.536 kcal (2) G-P(sol) polarization free energy of solvation -79.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds