Wall clock time and date at job start Wed Apr 1 2020 03:37:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34233 * 116.99907 * 2 1 4 4 O 1.20823 * 120.00215 * 0.02562 * 3 2 1 5 5 C 1.50696 * 119.99677 * 180.02562 * 3 2 1 6 6 N 1.46898 * 109.47062 * 180.02562 * 5 3 2 7 7 C 1.46896 * 111.00146 * 293.95334 * 6 5 3 8 8 C 1.46899 * 111.00455 * 169.99711 * 6 5 3 9 9 C 1.50691 * 109.47523 * 190.00045 * 8 6 5 10 10 O 1.21398 * 120.00150 * 359.97438 * 9 8 6 11 11 C 1.41733 * 120.00205 * 180.02562 * 9 8 6 12 12 C 1.37862 * 126.91018 * 0.02562 * 11 9 8 13 13 N 1.34666 * 109.62237 * 179.97438 * 12 11 9 14 14 C 1.46499 * 124.64683 * 180.02562 * 13 12 11 15 15 C 1.50705 * 109.46980 * 264.95484 * 14 13 12 16 16 H 1.07998 * 119.99626 * 359.97438 * 15 14 13 17 17 C 1.37873 * 119.99870 * 179.97438 * 15 14 13 18 18 N 1.31507 * 120.00178 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99811 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47222 * 90.00427 * 19 17 15 21 21 H 1.48501 * 109.47368 * 210.00178 * 19 17 15 22 22 H 1.48502 * 109.47505 * 330.00398 * 19 17 15 23 23 C 1.38023 * 110.70753 * 359.97438 * 13 12 11 24 24 C 1.39142 * 133.03684 * 179.97438 * 23 13 12 25 25 C 1.37777 * 119.94271 * 180.02562 * 24 23 13 26 26 C 1.38718 * 120.64122 * 0.02562 * 25 24 23 27 27 C 1.37805 * 120.26774 * 359.97438 * 26 25 24 28 28 C 1.39191 * 119.66997 * 0.02562 * 27 26 25 29 29 H 1.08997 * 109.47199 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47276 * 299.99818 * 1 2 3 31 31 H 1.08997 * 109.47182 * 59.99015 * 1 2 3 32 32 H 1.08996 * 109.47682 * 60.00237 * 5 3 2 33 33 H 1.09000 * 109.47120 * 300.00356 * 5 3 2 34 34 H 1.08997 * 109.47261 * 296.04938 * 7 6 5 35 35 H 1.09007 * 109.46871 * 56.04618 * 7 6 5 36 36 H 1.08997 * 109.47617 * 176.04114 * 7 6 5 37 37 H 1.09004 * 109.46746 * 69.99599 * 8 6 5 38 38 H 1.09003 * 109.47145 * 310.00882 * 8 6 5 39 39 H 1.08002 * 125.19186 * 359.93331 * 12 11 9 40 40 H 1.08999 * 109.47025 * 24.95556 * 14 13 12 41 41 H 1.08994 * 109.47161 * 144.95658 * 14 13 12 42 42 H 0.97006 * 120.00494 * 180.02562 * 18 17 15 43 43 H 1.07999 * 120.02756 * 0.02778 * 24 23 13 44 44 H 1.08002 * 119.67763 * 180.02562 * 25 24 23 45 45 H 1.08004 * 119.86821 * 179.97438 * 26 25 24 46 46 H 1.07997 * 120.16366 * 179.72179 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2094 0.0005 5 6 3.5663 1.2748 -0.0006 6 7 3.9829 2.6835 0.0002 7 6 3.5977 3.3471 -1.2525 8 6 5.4274 2.8053 0.2378 9 6 5.7771 4.2516 0.4759 10 8 4.9079 5.0986 0.4497 11 6 7.1212 4.6233 0.7294 12 6 8.2145 3.7857 0.7898 13 7 9.3220 4.5058 1.0511 14 6 10.6684 3.9441 1.1847 15 6 10.9637 3.6881 2.6402 16 1 10.2227 3.9210 3.3906 17 6 12.1798 3.1566 3.0138 18 7 13.0823 2.8735 2.1002 19 14 12.5455 2.8387 4.8179 20 1 12.1152 1.4631 5.1752 21 1 14.0039 2.9796 5.0597 22 1 11.8081 3.8206 5.6530 23 6 9.0151 5.8458 1.1745 24 6 9.7835 6.9758 1.4365 25 6 9.1843 8.2147 1.5027 26 6 7.8171 8.3499 1.3110 27 6 7.0393 7.2425 1.0505 28 6 7.6322 5.9851 0.9809 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5140 -0.8899 32 1 3.9557 0.7810 -0.8908 33 1 3.9564 0.7805 0.8891 34 1 4.1289 2.8869 -2.0857 35 1 2.5234 3.2418 -1.4040 36 1 3.8548 4.4049 -1.1974 37 1 5.9710 2.4386 -0.6329 38 1 5.7026 2.2161 1.1126 39 1 8.1869 2.7151 0.6496 40 1 10.7276 3.0067 0.6317 41 1 11.3974 4.6486 0.7846 42 1 13.9378 2.4992 2.3629 43 1 10.8487 6.8819 1.5877 44 1 9.7849 9.0890 1.7059 45 1 7.3603 9.3270 1.3661 46 1 5.9744 7.3492 0.9059 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000184258021.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:37:23 Heat of formation + Delta-G solvation = -46.773712 kcal Electronic energy + Delta-G solvation = -29203.885004 eV Core-core repulsion = 25059.914259 eV Total energy + Delta-G solvation = -4143.970745 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.04009 -40.68046 -38.93316 -37.07081 -36.66754 -35.89452 -33.64533 -31.96351 -30.16402 -29.72738 -29.19847 -27.95759 -27.32105 -26.86622 -24.14534 -23.22095 -22.47793 -21.47918 -20.77428 -20.40141 -18.63144 -17.77103 -17.05588 -16.87433 -16.79797 -16.41975 -16.01243 -15.60768 -15.35119 -15.09301 -14.77882 -14.55103 -14.43832 -13.90631 -13.77568 -13.60822 -13.42736 -13.32285 -13.14695 -12.88010 -12.48181 -12.32056 -12.09765 -12.07378 -11.81373 -11.72851 -11.51120 -11.43603 -11.20356 -10.98376 -10.95270 -10.92056 -10.60582 -10.51975 -10.28047 -9.81375 -9.19016 -9.03596 -8.82204 -8.44063 -7.77265 -7.16668 -6.43295 -4.54143 1.33258 1.95888 2.04159 2.34324 2.35151 3.10156 3.17995 3.21972 3.50995 3.66236 3.73367 4.15328 4.42544 4.52015 4.57787 4.83033 4.86954 4.90433 4.94298 4.98209 5.10992 5.23096 5.24161 5.26557 5.30484 5.46289 5.52021 5.53828 5.57318 5.70036 5.96825 6.05399 6.07203 6.14368 6.24454 6.34128 6.48805 6.54930 6.75006 6.77578 6.82831 6.92054 7.04226 7.17490 7.32664 7.47877 7.61603 7.65318 7.75919 7.81249 8.23815 8.53261 9.15064 10.63040 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.010548 B = 0.002684 C = 0.002247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2653.976670 B =10430.314544 C =12456.909141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.365 6.365 3 C 0.459 3.541 4 O -0.484 6.484 5 C 0.061 3.939 6 N -0.515 5.515 7 C 0.012 3.988 8 C 0.010 3.990 9 C 0.431 3.569 10 O -0.466 6.466 11 C -0.311 4.311 12 C 0.153 3.847 13 N -0.423 5.423 14 C 0.226 3.774 15 C -0.547 4.547 16 H 0.067 0.933 17 C 0.069 3.931 18 N -0.888 5.888 19 Si 0.905 3.095 20 H -0.276 1.276 21 H -0.282 1.282 22 H -0.270 1.270 23 C 0.084 3.916 24 C -0.101 4.101 25 C -0.122 4.122 26 C -0.143 4.143 27 C -0.082 4.082 28 C -0.057 4.057 29 H 0.100 0.900 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.078 0.922 33 H 0.119 0.881 34 H 0.019 0.981 35 H 0.079 0.921 36 H 0.092 0.908 37 H 0.068 0.932 38 H 0.108 0.892 39 H 0.173 0.827 40 H 0.053 0.947 41 H 0.050 0.950 42 H 0.270 0.730 43 H 0.124 0.876 44 H 0.119 0.881 45 H 0.116 0.884 46 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.902 -3.833 -6.049 16.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.282 6.282 3 C 0.300 3.700 4 O -0.369 6.369 5 C -0.068 4.068 6 N -0.240 5.240 7 C -0.136 4.136 8 C -0.118 4.118 9 C 0.313 3.687 10 O -0.344 6.344 11 C -0.320 4.320 12 C 0.011 3.989 13 N -0.096 5.096 14 C 0.109 3.891 15 C -0.585 4.585 16 H 0.085 0.915 17 C -0.136 4.136 18 N -0.525 5.525 19 Si 0.732 3.268 20 H -0.202 1.202 21 H -0.208 1.208 22 H -0.195 1.195 23 C -0.021 4.021 24 C -0.121 4.121 25 C -0.141 4.141 26 C -0.162 4.162 27 C -0.101 4.101 28 C -0.061 4.061 29 H 0.118 0.882 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.095 0.905 33 H 0.137 0.863 34 H 0.038 0.962 35 H 0.097 0.903 36 H 0.111 0.889 37 H 0.086 0.914 38 H 0.126 0.874 39 H 0.191 0.809 40 H 0.071 0.929 41 H 0.068 0.932 42 H 0.079 0.921 43 H 0.142 0.858 44 H 0.137 0.863 45 H 0.134 0.866 46 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -15.268 -3.032 -5.671 16.567 hybrid contribution 0.798 -0.878 0.394 1.250 sum -14.470 -3.910 -5.277 15.891 Atomic orbital electron populations 1.23236 0.76275 1.03551 1.02598 1.86487 1.23472 1.33642 1.84554 1.23636 0.91994 0.81370 0.72980 1.90676 1.66743 1.36016 1.43453 1.21614 0.88292 0.92054 1.04823 1.61395 1.14515 1.10685 1.37376 1.22739 1.01959 1.01512 0.87356 1.22553 0.87398 0.98856 1.02949 1.19653 0.86720 0.89046 0.73329 1.90472 1.50327 1.52797 1.40812 1.19556 0.94216 0.92869 1.25383 1.22524 0.85160 0.97274 0.93949 1.44599 1.09876 1.04833 1.50327 1.19944 0.74652 0.95424 0.99108 1.21293 1.01550 1.44447 0.91189 0.91472 1.24933 0.95453 0.94515 0.98661 1.69906 1.06905 1.42199 1.33518 0.86355 0.77729 0.78992 0.83711 1.20177 1.20782 1.19496 1.18319 0.93886 0.84932 1.04929 1.20199 0.99671 0.90119 1.02062 1.20705 0.94828 0.96166 1.02416 1.20862 0.93851 0.98003 1.03462 1.20498 0.99746 0.90385 0.99473 1.18825 0.91707 0.92671 1.02865 0.88163 0.91824 0.92001 0.90468 0.86328 0.96248 0.90283 0.88942 0.91372 0.87411 0.80938 0.92943 0.93157 0.92058 0.85791 0.86269 0.86563 0.85769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.26 10.56 101.05 1.07 1.33 16 2 O -0.36 -3.53 10.57 -39.27 -0.41 -3.95 16 3 C 0.46 5.23 7.65 36.00 0.28 5.51 16 4 O -0.48 -7.10 14.08 -18.75 -0.26 -7.36 16 5 C 0.06 0.58 5.56 -4.98 -0.03 0.56 16 6 N -0.51 -6.59 4.24 -245.84 -1.04 -7.63 16 7 C 0.01 0.15 8.85 60.06 0.53 0.68 16 8 C 0.01 0.12 4.73 -4.98 -0.02 0.10 16 9 C 0.43 6.95 6.68 -32.98 -0.22 6.73 16 10 O -0.47 -8.80 13.94 5.46 0.08 -8.73 16 11 C -0.31 -5.42 6.11 -104.87 -0.64 -6.06 16 12 C 0.15 2.55 10.70 -16.45 -0.18 2.38 16 13 N -0.42 -8.38 2.70 -115.29 -0.31 -8.69 16 14 C 0.23 5.04 5.68 -5.19 -0.03 5.01 16 15 C -0.55 -13.59 9.39 -34.44 -0.32 -13.91 16 16 H 0.07 1.73 7.81 -52.49 -0.41 1.32 16 17 C 0.07 1.73 5.46 -17.82 -0.10 1.64 16 18 N -0.89 -23.26 13.29 55.43 0.74 -22.52 16 19 Si 0.91 19.78 29.54 -169.99 -5.02 14.76 16 20 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 21 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 22 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 23 C 0.08 1.68 6.78 -83.95 -0.57 1.11 16 24 C -0.10 -1.87 9.96 -39.41 -0.39 -2.26 16 25 C -0.12 -1.95 10.01 -39.57 -0.40 -2.35 16 26 C -0.14 -2.26 10.03 -39.56 -0.40 -2.65 16 27 C -0.08 -1.47 9.80 -39.39 -0.39 -1.85 16 28 C -0.06 -1.10 6.24 -104.93 -0.65 -1.76 16 29 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.47 8.13 -51.93 -0.42 0.05 16 31 H 0.06 0.43 8.13 -51.93 -0.42 0.01 16 32 H 0.08 0.57 8.12 -51.93 -0.42 0.15 16 33 H 0.12 0.90 7.93 -51.93 -0.41 0.49 16 34 H 0.02 0.21 8.14 -51.93 -0.42 -0.21 16 35 H 0.08 1.07 5.83 -51.93 -0.30 0.77 16 36 H 0.09 1.40 5.88 -51.93 -0.31 1.09 16 37 H 0.07 0.67 8.12 -51.93 -0.42 0.25 16 38 H 0.11 1.08 7.93 -51.93 -0.41 0.67 16 39 H 0.17 2.20 7.91 -52.49 -0.42 1.79 16 40 H 0.05 1.16 8.10 -51.93 -0.42 0.74 16 41 H 0.05 1.19 8.14 -51.93 -0.42 0.76 16 42 H 0.27 6.71 8.31 -40.82 -0.34 6.37 16 43 H 0.12 2.29 8.06 -52.49 -0.42 1.87 16 44 H 0.12 1.56 8.06 -52.49 -0.42 1.14 16 45 H 0.12 1.49 8.06 -52.48 -0.42 1.07 16 46 H 0.12 2.16 7.38 -52.49 -0.39 1.78 16 LS Contribution 392.05 15.07 5.91 5.91 Total: -1.00 -31.51 392.05 -9.22 -40.73 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: -6.42 Total: 3.27 kcal Atomic # 6 Polarization: -3.33 SS G_CDS: -2.46 Total: -5.79 kcal Atomic # 7 Polarization: -38.22 SS G_CDS: -0.62 Total: -38.84 kcal Atomic # 8 Polarization: -19.43 SS G_CDS: -0.60 Total: -20.03 kcal Atomic # 14 Polarization: 19.78 SS G_CDS: -5.02 Total: 14.76 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -31.51 -9.22 -40.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184258021.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.046 kcal (2) G-P(sol) polarization free energy of solvation -31.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds