Wall clock time and date at job start Wed Apr 1 2020 02:14:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46500 * 109.47120 * 2 1 4 4 C 1.46499 * 120.00123 * 75.01210 * 3 2 1 5 5 C 1.50706 * 109.46719 * 90.00273 * 4 3 2 6 6 H 1.07993 * 120.00032 * 359.97438 * 5 4 3 7 7 C 1.37877 * 119.99944 * 180.02562 * 5 4 3 8 8 N 1.31510 * 120.00113 * 180.02562 * 7 5 4 9 9 Si 1.86800 * 119.99913 * 359.97438 * 7 5 4 10 10 H 1.48505 * 109.47098 * 90.00207 * 9 7 5 11 11 H 1.48499 * 109.47114 * 210.00125 * 9 7 5 12 12 H 1.48499 * 109.47388 * 329.99960 * 9 7 5 13 13 C 1.34774 * 119.99978 * 255.01672 * 3 2 1 14 14 O 1.21552 * 120.00515 * 183.84079 * 13 3 2 15 15 C 1.47847 * 120.00049 * 3.84556 * 13 3 2 16 16 C 1.39578 * 120.14166 * 22.57367 * 15 13 3 17 17 C 1.37963 * 119.85005 * 179.79211 * 16 15 13 18 18 C 1.38356 * 120.14298 * 0.49495 * 17 16 15 19 19 C 1.50710 * 119.85280 * 179.71988 * 18 17 16 20 20 C 1.52999 * 109.46730 * 270.01992 * 19 18 17 21 21 H 1.08998 * 110.54455 * 303.60649 * 20 19 18 22 22 C 1.54233 * 110.60428 * 180.58645 * 20 19 18 23 23 C 1.51311 * 103.55760 * 241.48460 * 22 20 19 24 24 O 1.21230 * 125.39668 * 179.97438 * 23 22 20 25 25 N 1.33879 * 109.20670 * 0.02562 * 23 22 20 26 26 C 1.33873 * 114.47736 * 359.97438 * 25 23 22 27 27 O 1.21225 * 125.39922 * 179.97438 * 26 25 23 28 28 C 1.38359 * 120.29658 * 359.73990 * 18 17 16 29 29 C 1.37955 * 120.14336 * 0.02679 * 28 18 17 30 30 H 1.08997 * 109.47116 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47163 * 300.00075 * 1 2 3 32 32 H 1.08997 * 109.47059 * 59.99948 * 1 2 3 33 33 H 1.09003 * 109.46754 * 119.99437 * 2 1 3 34 34 H 1.08989 * 109.47241 * 239.99835 * 2 1 3 35 35 H 1.09000 * 109.47527 * 209.99915 * 4 3 2 36 36 H 1.09003 * 109.47627 * 330.00309 * 4 3 2 37 37 H 0.96999 * 120.00628 * 180.02562 * 8 7 5 38 38 H 1.07999 * 120.07413 * 0.02562 * 16 15 13 39 39 H 1.07998 * 119.92594 * 180.23274 * 17 16 15 40 40 H 1.08991 * 109.46876 * 30.02230 * 19 18 17 41 41 H 1.08993 * 109.46792 * 150.02496 * 19 18 17 42 42 H 1.09005 * 110.60279 * 0.02562 * 22 20 19 43 43 H 1.08999 * 110.60563 * 122.96661 * 22 20 19 44 44 H 0.96997 * 122.76005 * 179.97438 * 25 23 22 45 45 H 1.07997 * 119.93248 * 179.97438 * 28 18 17 46 46 H 1.07998 * 120.07364 * 179.97438 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 1.9532 2.1812 1.2255 5 6 3.2250 1.9980 2.0131 6 1 4.0036 1.3502 1.6385 7 6 3.3940 2.6567 3.2126 8 7 4.5040 2.4972 3.8996 9 14 2.0469 3.7767 3.8609 10 1 1.1148 2.9905 4.7086 11 1 2.6540 4.8641 4.6698 12 1 1.3011 4.3659 2.7200 13 6 2.5275 1.9160 -1.1275 14 8 2.9966 3.0372 -1.1105 15 6 2.5155 1.1388 -2.3852 16 6 1.6025 0.0970 -2.5566 17 6 1.5937 -0.6215 -3.7343 18 6 2.4940 -0.3179 -4.7401 19 6 2.4828 -1.1112 -6.0215 20 6 3.4252 -2.3090 -5.8880 21 1 4.4299 -1.9779 -5.6253 22 6 3.4449 -3.1322 -7.1921 23 6 2.9297 -4.4887 -6.7633 24 8 2.7844 -5.4470 -7.4914 25 7 2.6588 -4.4626 -5.4524 26 6 2.9004 -3.2870 -4.8593 27 8 2.7258 -3.0441 -3.6846 28 6 3.4048 0.7103 -4.5747 29 6 3.4211 1.4397 -3.4038 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5138 0.8901 34 1 1.8934 -0.5138 -0.8899 35 1 1.8345 3.2334 0.9668 36 1 1.1037 1.8568 1.8266 37 1 4.6228 2.9603 4.7436 38 1 0.9020 -0.1436 -1.7706 39 1 0.8853 -1.4253 -3.8698 40 1 1.4713 -1.4650 -6.2209 41 1 2.8148 -0.4776 -6.8439 42 1 2.7837 -2.6879 -7.9362 43 1 4.4605 -3.2125 -7.5797 44 1 2.3156 -5.2322 -4.9720 45 1 4.1052 0.9419 -5.3634 46 1 4.1328 2.2418 -3.2757 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000267742221.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:14:53 Heat of formation + Delta-G solvation = -42.494018 kcal Electronic energy + Delta-G solvation = -29871.155550 eV Core-core repulsion = 25727.370386 eV Total energy + Delta-G solvation = -4143.785164 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.29066 -40.20127 -39.08297 -38.10262 -36.36287 -35.71781 -34.58454 -32.81416 -31.47476 -31.06886 -30.12277 -28.46220 -27.25459 -25.37649 -23.21664 -23.11840 -22.50150 -22.27580 -21.51909 -20.69397 -18.97545 -18.32188 -17.26051 -16.97103 -16.79611 -16.62393 -16.32256 -15.61220 -15.42969 -14.85459 -14.78598 -14.60865 -14.45851 -14.16804 -14.04947 -13.89340 -13.66324 -13.58870 -13.03197 -12.74027 -12.63473 -12.50726 -12.23842 -12.11110 -11.81436 -11.73482 -11.57371 -11.38477 -10.98637 -10.93112 -10.91565 -10.73535 -10.55361 -10.47216 -10.33604 -10.07342 -9.51969 -9.08991 -8.74903 -8.57704 -8.56484 -7.70235 -6.05559 -4.03840 0.99589 1.07957 1.49262 2.26774 2.31937 3.27508 3.28415 3.36443 3.40852 3.55391 3.69692 3.76247 3.82398 4.09906 4.31488 4.42026 4.58622 4.63728 4.83273 4.92830 4.96313 5.03469 5.04141 5.17666 5.24172 5.28109 5.37659 5.50799 5.51153 5.53803 5.64921 5.72238 5.90500 5.97240 6.07313 6.15635 6.19574 6.36058 6.44245 6.51648 6.52612 6.74785 6.82402 6.95866 7.01665 7.36256 7.40402 7.63912 8.25968 8.49960 8.94775 9.00746 9.54505 11.07972 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.021489 B = 0.002416 C = 0.002340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.662435 B =11586.896135 C =11960.982392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.072 3.928 3 N -0.583 5.583 4 C 0.216 3.784 5 C -0.526 4.526 6 H 0.075 0.925 7 C 0.071 3.929 8 N -0.898 5.898 9 Si 0.874 3.126 10 H -0.275 1.275 11 H -0.284 1.284 12 H -0.264 1.264 13 C 0.545 3.455 14 O -0.536 6.536 15 C -0.114 4.114 16 C -0.122 4.122 17 C -0.097 4.097 18 C -0.086 4.086 19 C -0.062 4.062 20 C -0.122 4.122 21 H 0.129 0.871 22 C -0.156 4.156 23 C 0.530 3.470 24 O -0.488 6.488 25 N -0.683 5.683 26 C 0.524 3.476 27 O -0.453 6.453 28 C -0.121 4.121 29 C -0.068 4.068 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.059 0.941 33 H 0.079 0.921 34 H 0.102 0.898 35 H 0.041 0.959 36 H 0.027 0.973 37 H 0.264 0.736 38 H 0.163 0.837 39 H 0.117 0.883 40 H 0.079 0.921 41 H 0.095 0.905 42 H 0.124 0.876 43 H 0.124 0.876 44 H 0.415 0.585 45 H 0.125 0.875 46 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.396 -12.829 -24.355 28.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.051 4.051 3 N -0.313 5.313 4 C 0.096 3.904 5 C -0.564 4.564 6 H 0.093 0.907 7 C -0.131 4.131 8 N -0.536 5.536 9 Si 0.701 3.299 10 H -0.201 1.201 11 H -0.209 1.209 12 H -0.188 1.188 13 C 0.333 3.667 14 O -0.414 6.414 15 C -0.118 4.118 16 C -0.140 4.140 17 C -0.115 4.115 18 C -0.086 4.086 19 C -0.100 4.100 20 C -0.143 4.143 21 H 0.147 0.853 22 C -0.195 4.195 23 C 0.318 3.682 24 O -0.360 6.360 25 N -0.349 5.349 26 C 0.310 3.690 27 O -0.322 6.322 28 C -0.139 4.139 29 C -0.087 4.087 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.077 0.923 33 H 0.098 0.902 34 H 0.120 0.880 35 H 0.059 0.941 36 H 0.045 0.955 37 H 0.074 0.926 38 H 0.180 0.820 39 H 0.135 0.865 40 H 0.097 0.903 41 H 0.113 0.887 42 H 0.142 0.858 43 H 0.142 0.858 44 H 0.255 0.745 45 H 0.143 0.857 46 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -6.167 -12.389 -23.953 27.663 hybrid contribution -0.652 0.024 0.928 1.134 sum -6.819 -12.364 -23.025 27.010 Atomic orbital electron populations 1.22293 0.96616 1.02028 1.02664 1.22339 0.93677 0.84462 1.04621 1.47797 1.59591 1.13023 1.10879 1.19668 0.97567 0.91773 0.81401 1.21322 1.01843 1.28893 1.04369 0.90731 1.24857 0.95597 0.96126 0.96483 1.69895 1.25530 1.43299 1.14919 0.86872 0.82432 0.81176 0.79422 1.20124 1.20933 1.18844 1.18237 0.78866 0.86382 0.83224 1.90744 1.45375 1.19760 1.85510 1.20226 0.98386 0.97556 0.95598 1.22553 0.99391 0.93980 0.98042 1.20834 0.98783 0.98942 0.92973 1.19738 0.96757 0.96636 0.95462 1.20513 0.99132 0.93899 0.96412 1.22151 1.03620 0.95515 0.93026 0.85303 1.22618 1.05933 0.92084 0.98895 1.20804 0.75388 0.90751 0.81239 1.90829 1.50013 1.38617 1.56527 1.44839 1.61171 1.16514 1.12423 1.20793 0.76376 0.82889 0.88933 1.90898 1.47359 1.78629 1.15270 1.20879 0.99128 0.96197 0.97745 1.21228 0.97197 0.98366 0.91861 0.91557 0.91442 0.92256 0.90225 0.88013 0.94129 0.95523 0.92602 0.82018 0.86460 0.90287 0.88677 0.85785 0.85824 0.74546 0.85724 0.84952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.37 9.04 37.16 0.34 -2.03 16 2 C 0.07 1.21 5.59 -4.04 -0.02 1.19 16 3 N -0.58 -12.54 2.49 -176.17 -0.44 -12.98 16 4 C 0.22 5.42 4.15 -5.19 -0.02 5.40 16 5 C -0.53 -15.46 9.94 -34.44 -0.34 -15.81 16 6 H 0.07 2.42 8.06 -52.49 -0.42 2.00 16 7 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 8 N -0.90 -28.12 13.96 55.43 0.77 -27.35 16 9 Si 0.87 21.81 27.47 -169.99 -4.67 17.15 16 10 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 12 H -0.26 -6.42 6.54 56.52 0.37 -6.05 16 13 C 0.55 11.91 7.52 -12.33 -0.09 11.81 16 14 O -0.54 -13.81 16.19 5.32 0.09 -13.73 16 15 C -0.11 -1.94 5.61 -104.97 -0.59 -2.53 16 16 C -0.12 -1.69 7.52 -39.18 -0.29 -1.99 16 17 C -0.10 -1.09 7.43 -39.64 -0.29 -1.39 16 18 C -0.09 -0.81 4.74 -104.53 -0.50 -1.30 16 19 C -0.06 -0.31 4.69 -27.88 -0.13 -0.44 16 20 C -0.12 -0.55 3.13 -90.82 -0.28 -0.83 16 21 H 0.13 0.52 8.14 -51.93 -0.42 0.09 16 22 C -0.16 -0.42 6.67 -26.94 -0.18 -0.60 16 23 C 0.53 3.19 8.55 -11.09 -0.09 3.10 16 24 O -0.49 -4.73 18.02 5.60 0.10 -4.63 16 25 N -0.68 -3.98 5.48 -11.39 -0.06 -4.04 16 26 C 0.52 3.83 7.67 -11.08 -0.09 3.74 16 27 O -0.45 -5.07 15.04 5.60 0.08 -4.99 16 28 C -0.12 -1.30 9.68 -39.64 -0.38 -1.68 16 29 C -0.07 -1.00 9.59 -39.19 -0.38 -1.38 16 30 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.07 0.96 7.43 -51.93 -0.39 0.58 16 32 H 0.06 0.74 7.02 -51.93 -0.36 0.38 16 33 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 34 H 0.10 1.56 4.04 -52.39 -0.21 1.35 16 35 H 0.04 1.09 6.54 -51.93 -0.34 0.75 16 36 H 0.03 0.62 6.75 -51.93 -0.35 0.27 16 37 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 38 H 0.16 2.12 2.30 -52.49 -0.12 2.00 16 39 H 0.12 1.13 7.67 -52.49 -0.40 0.73 16 40 H 0.08 0.34 8.08 -51.93 -0.42 -0.08 16 41 H 0.09 0.27 8.08 -51.93 -0.42 -0.15 16 42 H 0.12 0.13 7.74 -51.93 -0.40 -0.28 16 43 H 0.12 0.13 8.14 -51.93 -0.42 -0.29 16 44 H 0.42 2.05 8.96 -40.82 -0.37 1.68 16 45 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 46 H 0.13 2.04 7.82 -52.49 -0.41 1.63 16 LS Contribution 375.80 15.07 5.66 5.66 Total: -1.00 -38.87 375.80 -7.81 -46.67 By element: Atomic # 1 Polarization: 6.84 SS G_CDS: -5.90 Total: 0.95 kcal Atomic # 6 Polarization: 0.73 SS G_CDS: -3.45 Total: -2.71 kcal Atomic # 7 Polarization: -44.64 SS G_CDS: 0.27 Total: -44.37 kcal Atomic # 8 Polarization: -23.61 SS G_CDS: 0.27 Total: -23.34 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.67 Total: 17.15 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -38.87 -7.81 -46.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267742221.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.177 kcal (2) G-P(sol) polarization free energy of solvation -38.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds