Wall clock time and date at job start Wed Apr 1 2020 02:45:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.45192 * 109.47017 * 2 1 4 4 C 1.34234 * 116.99973 * 180.02562 * 3 2 1 5 5 O 1.20836 * 119.99651 * 359.97438 * 4 3 2 6 6 C 1.50696 * 120.00282 * 179.97438 * 4 3 2 7 7 N 1.46501 * 109.47038 * 179.97438 * 6 4 3 8 8 C 1.34784 * 119.99401 * 180.02562 * 7 6 4 9 9 O 1.21666 * 120.00206 * 359.97438 * 8 7 6 10 10 C 1.46915 * 119.99525 * 180.02562 * 8 7 6 11 11 C 1.36374 * 126.76930 * 359.97438 * 10 8 7 12 12 N 1.35474 * 109.77040 * 179.97438 * 11 10 8 13 13 C 1.46493 * 124.78618 * 179.97438 * 12 11 10 14 14 C 1.52996 * 109.47400 * 265.02448 * 13 12 11 15 15 C 1.50702 * 109.47159 * 180.02562 * 14 13 12 16 16 H 1.08002 * 120.00299 * 0.02562 * 15 14 13 17 17 C 1.37884 * 119.99942 * 179.72211 * 15 14 13 18 18 N 1.31514 * 119.99698 * 0.28408 * 17 15 14 19 19 Si 1.86794 * 119.99837 * 180.27476 * 17 15 14 20 20 H 1.48501 * 109.47188 * 90.00793 * 19 17 15 21 21 H 1.48501 * 109.47085 * 210.00372 * 19 17 15 22 22 H 1.48498 * 109.47634 * 330.00608 * 19 17 15 23 23 C 1.37963 * 110.42294 * 0.26591 * 12 11 10 24 24 C 1.39128 * 133.18358 * 180.48334 * 23 12 11 25 25 C 1.37764 * 119.92592 * 179.56790 * 24 23 12 26 26 C 1.38754 * 120.63813 * 359.70715 * 25 24 23 27 27 C 1.37750 * 120.30079 * 0.02562 * 26 25 24 28 28 C 1.39276 * 119.67080 * 0.02562 * 27 26 25 29 29 H 1.08994 * 109.46946 * 60.00177 * 1 2 3 30 30 H 1.08998 * 109.47139 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.46797 * 300.00236 * 1 2 3 32 32 H 1.08997 * 109.47161 * 239.99364 * 2 1 3 33 33 H 1.09005 * 109.46755 * 120.00285 * 2 1 3 34 34 H 1.09004 * 109.46951 * 59.99905 * 6 4 3 35 35 H 1.08996 * 109.47572 * 300.00351 * 6 4 3 36 36 H 0.96994 * 120.00159 * 0.02562 * 7 6 4 37 37 H 1.07999 * 125.11454 * 359.95838 * 11 10 8 38 38 H 1.09004 * 109.46794 * 145.02547 * 13 12 11 39 39 H 1.09000 * 109.47559 * 25.03023 * 13 12 11 40 40 H 1.09004 * 109.47066 * 60.00265 * 14 13 12 41 41 H 1.08994 * 109.47405 * 300.00096 * 14 13 12 42 42 H 0.97005 * 119.99651 * 179.97438 * 18 17 15 43 43 H 1.07996 * 120.03221 * 359.27757 * 24 23 12 44 44 H 1.08007 * 119.67954 * 179.69314 * 25 24 23 45 45 H 1.08001 * 119.85044 * 179.97438 * 26 25 24 46 46 H 1.08003 * 120.16629 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3448 1.5448 -0.0005 5 8 4.0808 0.5865 -0.0005 6 6 3.9208 2.9373 -0.0012 7 7 5.3838 2.8606 -0.0010 8 6 6.1178 3.9910 -0.0010 9 8 5.5654 5.0750 -0.0015 10 6 7.5850 3.9141 -0.0015 11 6 8.3430 2.7804 -0.0015 12 7 9.6575 3.1081 -0.0025 13 6 10.7594 2.1428 -0.0023 14 6 11.2264 1.9021 1.4346 15 6 12.3604 0.9096 1.4347 16 1 12.7131 0.4925 0.5031 17 6 12.9519 0.5387 2.6238 18 7 12.5226 1.0469 3.7583 19 14 14.3626 -0.6857 2.6232 20 1 15.6504 0.0430 2.4971 21 1 14.3512 -1.4545 3.8936 22 1 14.2077 -1.6189 1.4785 23 6 9.8119 4.4790 0.0027 24 6 10.9265 5.3116 -0.0045 25 6 10.7625 6.6795 -0.0050 26 6 9.4930 7.2395 -0.0045 27 6 8.3771 6.4319 -0.0029 28 6 8.5281 5.0473 -0.0013 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 3.5851 3.4697 0.8888 35 1 3.5846 3.4693 -0.8911 36 1 5.8241 1.9963 -0.0010 37 1 7.9539 1.7729 -0.0005 38 1 11.5872 2.5364 -0.5923 39 1 10.4190 1.2026 -0.4361 40 1 10.3986 1.5086 2.0246 41 1 11.5669 2.8423 1.8683 42 1 12.9384 0.7857 4.5949 43 1 11.9191 4.8861 -0.0050 44 1 11.6306 7.3222 -0.0056 45 1 9.3793 8.3135 -0.0045 46 1 7.3900 6.8701 -0.0021 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000444032607.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:45:53 Heat of formation + Delta-G solvation = -73.018089 kcal Electronic energy + Delta-G solvation = -28699.149675 eV Core-core repulsion = 24554.040888 eV Total energy + Delta-G solvation = -4145.108787 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.27549 -40.90072 -39.04915 -37.11541 -36.87936 -34.53235 -34.07376 -32.42997 -32.17681 -30.45328 -29.49923 -28.84484 -27.68116 -25.15642 -23.74519 -22.76678 -22.41708 -21.72267 -21.24682 -20.45387 -19.75376 -18.10784 -17.58899 -17.19328 -16.78996 -16.52776 -16.10217 -15.52404 -15.44864 -15.16686 -15.00676 -14.85648 -14.48348 -14.06750 -13.99402 -13.60290 -13.48719 -13.21367 -13.06771 -12.95264 -12.90625 -12.47999 -12.34679 -12.28837 -12.01422 -11.81260 -11.41820 -11.21443 -11.09208 -10.95970 -10.93211 -10.72177 -10.64638 -10.30717 -9.94397 -9.84222 -9.44996 -9.31399 -9.20300 -8.55965 -7.95216 -7.35667 -6.19619 -4.26111 1.26799 1.76533 1.85635 2.03481 2.28644 3.10121 3.20676 3.25613 3.28388 3.30754 3.60296 4.20488 4.26138 4.30259 4.51003 4.54918 4.85134 4.86263 4.93558 4.99220 5.00063 5.13762 5.16769 5.22909 5.33301 5.34907 5.46868 5.53909 5.55862 5.73396 5.85202 5.95933 5.98248 6.00081 6.01587 6.20571 6.34868 6.36390 6.72208 6.88212 6.94673 7.02654 7.27841 7.31879 7.36285 7.46761 7.53354 7.57083 7.77605 8.09919 8.32205 8.79573 9.39871 10.91165 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.007995 B = 0.002741 C = 0.002102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3501.326788 B =10211.577406 C =13315.905467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.061 3.939 3 O -0.354 6.354 4 C 0.460 3.540 5 O -0.502 6.502 6 C 0.133 3.867 7 N -0.731 5.731 8 C 0.606 3.394 9 O -0.547 6.547 10 C -0.258 4.258 11 C 0.129 3.871 12 N -0.449 5.449 13 C 0.100 3.900 14 C 0.012 3.988 15 C -0.531 4.531 16 H 0.059 0.941 17 C 0.062 3.938 18 N -0.887 5.887 19 Si 0.897 3.103 20 H -0.279 1.279 21 H -0.285 1.285 22 H -0.273 1.273 23 C 0.091 3.909 24 C -0.112 4.112 25 C -0.110 4.110 26 C -0.145 4.145 27 C -0.074 4.074 28 C -0.060 4.060 29 H 0.067 0.933 30 H 0.081 0.919 31 H 0.068 0.932 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.112 0.888 35 H 0.112 0.888 36 H 0.410 0.590 37 H 0.172 0.828 38 H 0.081 0.919 39 H 0.084 0.916 40 H 0.023 0.977 41 H 0.025 0.975 42 H 0.264 0.736 43 H 0.124 0.876 44 H 0.122 0.878 45 H 0.119 0.881 46 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.603 3.039 -9.181 20.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.012 4.012 3 O -0.270 6.270 4 C 0.302 3.698 5 O -0.389 6.389 6 C 0.008 3.992 7 N -0.389 5.389 8 C 0.397 3.603 9 O -0.425 6.425 10 C -0.269 4.269 11 C -0.008 4.008 12 N -0.125 5.125 13 C -0.019 4.019 14 C -0.026 4.026 15 C -0.570 4.570 16 H 0.078 0.922 17 C -0.141 4.141 18 N -0.525 5.525 19 Si 0.725 3.275 20 H -0.205 1.205 21 H -0.211 1.211 22 H -0.197 1.197 23 C -0.013 4.013 24 C -0.132 4.132 25 C -0.130 4.130 26 C -0.164 4.164 27 C -0.092 4.092 28 C -0.064 4.064 29 H 0.086 0.914 30 H 0.099 0.901 31 H 0.087 0.913 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.130 0.870 35 H 0.130 0.870 36 H 0.247 0.753 37 H 0.189 0.811 38 H 0.099 0.901 39 H 0.102 0.898 40 H 0.042 0.958 41 H 0.044 0.956 42 H 0.074 0.926 43 H 0.142 0.858 44 H 0.140 0.860 45 H 0.137 0.863 46 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -18.500 3.246 -8.994 20.825 hybrid contribution 1.058 -1.532 0.271 1.881 sum -17.443 1.714 -8.723 19.577 Atomic orbital electron populations 1.21818 0.92354 1.03155 1.03686 1.23107 0.95524 0.79605 1.02979 1.86475 1.23723 1.32993 1.83853 1.23607 0.81154 0.92532 0.72477 1.90700 1.60280 1.42817 1.45118 1.20542 0.82056 0.90286 1.06365 1.45615 1.04566 1.10458 1.78219 1.17157 0.85594 0.82854 0.74711 1.90745 1.72983 1.27814 1.50964 1.19571 0.91026 0.92548 1.23792 1.22118 0.83080 0.98840 0.96730 1.44397 1.06356 1.05268 1.56514 1.22494 0.86361 0.89800 1.03261 1.19459 0.96920 0.98004 0.88209 1.20977 1.17137 1.25641 0.93235 0.92244 1.25007 0.97225 0.96375 0.95474 1.69970 1.41440 1.43223 0.97873 0.86509 0.82309 0.81081 0.77629 1.20461 1.21050 1.19735 1.18277 0.95276 0.82862 1.04929 1.20151 0.96531 0.92656 1.03825 1.20757 0.97298 0.93653 1.01250 1.20883 0.92233 0.99275 1.03976 1.20547 0.99009 0.91061 0.98606 1.18657 0.90554 0.92741 1.04456 0.91358 0.90058 0.91318 0.90945 0.90876 0.86981 0.87020 0.75280 0.81062 0.90078 0.89784 0.95818 0.95616 0.92621 0.85803 0.85966 0.86270 0.85454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.72 10.29 37.16 0.38 -0.34 16 2 C 0.06 0.44 6.19 37.16 0.23 0.67 16 3 O -0.35 -3.16 10.22 -39.27 -0.40 -3.56 16 4 C 0.46 4.66 8.03 36.00 0.29 4.95 16 5 O -0.50 -6.33 15.42 -18.76 -0.29 -6.62 16 6 C 0.13 1.29 6.27 -5.20 -0.03 1.26 16 7 N -0.73 -8.87 5.52 -62.72 -0.35 -9.22 16 8 C 0.61 9.31 7.80 -12.74 -0.10 9.21 16 9 O -0.55 -9.60 16.16 5.22 0.08 -9.52 16 10 C -0.26 -4.26 6.27 -103.31 -0.65 -4.91 16 11 C 0.13 2.01 10.75 -16.62 -0.18 1.83 16 12 N -0.45 -7.91 2.74 -114.22 -0.31 -8.23 16 13 C 0.10 1.86 5.89 -4.05 -0.02 1.83 16 14 C 0.01 0.28 5.30 -27.88 -0.15 0.13 16 15 C -0.53 -13.90 9.11 -34.44 -0.31 -14.21 16 16 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 17 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 18 N -0.89 -25.69 13.29 55.43 0.74 -24.95 16 19 Si 0.90 20.62 29.54 -169.99 -5.02 15.59 16 20 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 21 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 22 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 23 C 0.09 1.66 6.79 -83.96 -0.57 1.09 16 24 C -0.11 -1.87 9.97 -39.42 -0.39 -2.26 16 25 C -0.11 -1.60 10.01 -39.56 -0.40 -2.00 16 26 C -0.14 -2.08 10.03 -39.57 -0.40 -2.47 16 27 C -0.07 -1.20 9.85 -39.37 -0.39 -1.59 16 28 C -0.06 -1.07 6.27 -104.95 -0.66 -1.72 16 29 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.07 0.50 8.13 -51.93 -0.42 0.08 16 33 H 0.07 0.53 8.13 -51.93 -0.42 0.11 16 34 H 0.11 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.11 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.41 4.71 6.32 -40.82 -0.26 4.45 16 37 H 0.17 2.10 7.38 -52.49 -0.39 1.71 16 38 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 39 H 0.08 1.41 8.11 -51.93 -0.42 0.98 16 40 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.03 0.68 8.14 -51.93 -0.42 0.25 16 42 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 43 H 0.12 2.00 8.06 -52.49 -0.42 1.58 16 44 H 0.12 1.44 8.06 -52.48 -0.42 1.01 16 45 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 46 H 0.13 2.02 7.45 -52.48 -0.39 1.63 16 LS Contribution 399.35 15.07 6.02 6.02 Total: -1.00 -33.07 399.35 -9.47 -42.53 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: -6.49 Total: 4.89 kcal Atomic # 6 Polarization: -3.50 SS G_CDS: -3.44 Total: -6.94 kcal Atomic # 7 Polarization: -42.47 SS G_CDS: 0.08 Total: -42.40 kcal Atomic # 8 Polarization: -19.09 SS G_CDS: -0.61 Total: -19.69 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -33.07 -9.47 -42.53 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000444032607.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.486 kcal (2) G-P(sol) polarization free energy of solvation -33.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds