Wall clock time and date at job start Wed Apr 1 2020 02:45:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.45192 * 109.47017 * 2 1 4 4 C 1.34234 * 116.99973 * 180.02562 * 3 2 1 5 5 O 1.20836 * 119.99651 * 359.97438 * 4 3 2 6 6 C 1.50696 * 120.00282 * 179.97438 * 4 3 2 7 7 N 1.46501 * 109.47038 * 179.97438 * 6 4 3 8 8 C 1.34784 * 119.99401 * 180.02562 * 7 6 4 9 9 O 1.21666 * 120.00206 * 359.97438 * 8 7 6 10 10 C 1.46915 * 119.99525 * 180.02562 * 8 7 6 11 11 C 1.36374 * 126.76930 * 359.97438 * 10 8 7 12 12 N 1.35474 * 109.77040 * 179.97438 * 11 10 8 13 13 C 1.46493 * 124.78618 * 179.97438 * 12 11 10 14 14 C 1.52996 * 109.47400 * 265.02448 * 13 12 11 15 15 C 1.50702 * 109.47159 * 180.02562 * 14 13 12 16 16 H 1.08002 * 120.00299 * 0.02562 * 15 14 13 17 17 C 1.37884 * 119.99942 * 179.72211 * 15 14 13 18 18 N 1.31514 * 119.99698 * 0.28408 * 17 15 14 19 19 Si 1.86794 * 119.99837 * 180.27476 * 17 15 14 20 20 H 1.48501 * 109.47188 * 90.00793 * 19 17 15 21 21 H 1.48501 * 109.47085 * 210.00372 * 19 17 15 22 22 H 1.48498 * 109.47634 * 330.00608 * 19 17 15 23 23 C 1.37963 * 110.42294 * 0.26591 * 12 11 10 24 24 C 1.39128 * 133.18358 * 180.48334 * 23 12 11 25 25 C 1.37764 * 119.92592 * 179.56790 * 24 23 12 26 26 C 1.38754 * 120.63813 * 359.70715 * 25 24 23 27 27 C 1.37750 * 120.30079 * 0.02562 * 26 25 24 28 28 C 1.39276 * 119.67080 * 0.02562 * 27 26 25 29 29 H 1.08994 * 109.46946 * 60.00177 * 1 2 3 30 30 H 1.08998 * 109.47139 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.46797 * 300.00236 * 1 2 3 32 32 H 1.08997 * 109.47161 * 239.99364 * 2 1 3 33 33 H 1.09005 * 109.46755 * 120.00285 * 2 1 3 34 34 H 1.09004 * 109.46951 * 59.99905 * 6 4 3 35 35 H 1.08996 * 109.47572 * 300.00351 * 6 4 3 36 36 H 0.96994 * 120.00159 * 0.02562 * 7 6 4 37 37 H 1.07999 * 125.11454 * 359.95838 * 11 10 8 38 38 H 1.09004 * 109.46794 * 145.02547 * 13 12 11 39 39 H 1.09000 * 109.47559 * 25.03023 * 13 12 11 40 40 H 1.09004 * 109.47066 * 60.00265 * 14 13 12 41 41 H 1.08994 * 109.47405 * 300.00096 * 14 13 12 42 42 H 0.97005 * 119.99651 * 179.97438 * 18 17 15 43 43 H 1.07996 * 120.03221 * 359.27757 * 24 23 12 44 44 H 1.08007 * 119.67954 * 179.69314 * 25 24 23 45 45 H 1.08001 * 119.85044 * 179.97438 * 26 25 24 46 46 H 1.08003 * 120.16629 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3448 1.5448 -0.0005 5 8 4.0808 0.5865 -0.0005 6 6 3.9208 2.9373 -0.0012 7 7 5.3838 2.8606 -0.0010 8 6 6.1178 3.9910 -0.0010 9 8 5.5654 5.0750 -0.0015 10 6 7.5850 3.9141 -0.0015 11 6 8.3430 2.7804 -0.0015 12 7 9.6575 3.1081 -0.0025 13 6 10.7594 2.1428 -0.0023 14 6 11.2264 1.9021 1.4346 15 6 12.3604 0.9096 1.4347 16 1 12.7131 0.4925 0.5031 17 6 12.9519 0.5387 2.6238 18 7 12.5226 1.0469 3.7583 19 14 14.3626 -0.6857 2.6232 20 1 15.6504 0.0430 2.4971 21 1 14.3512 -1.4545 3.8936 22 1 14.2077 -1.6189 1.4785 23 6 9.8119 4.4790 0.0027 24 6 10.9265 5.3116 -0.0045 25 6 10.7625 6.6795 -0.0050 26 6 9.4930 7.2395 -0.0045 27 6 8.3771 6.4319 -0.0029 28 6 8.5281 5.0473 -0.0013 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 3.5851 3.4697 0.8888 35 1 3.5846 3.4693 -0.8911 36 1 5.8241 1.9963 -0.0010 37 1 7.9539 1.7729 -0.0005 38 1 11.5872 2.5364 -0.5923 39 1 10.4190 1.2026 -0.4361 40 1 10.3986 1.5086 2.0246 41 1 11.5669 2.8423 1.8683 42 1 12.9384 0.7857 4.5949 43 1 11.9191 4.8861 -0.0050 44 1 11.6306 7.3222 -0.0056 45 1 9.3793 8.3135 -0.0045 46 1 7.3900 6.8701 -0.0021 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000444032607.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:45:52 Heat of formation + Delta-G solvation = -91.314253 kcal Electronic energy + Delta-G solvation = -28699.943056 eV Core-core repulsion = 24554.040888 eV Total energy + Delta-G solvation = -4145.902168 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.52248 -41.74570 -40.18765 -38.14365 -37.91927 -35.85747 -35.57649 -34.06383 -32.74304 -31.92110 -30.58548 -30.27106 -28.82306 -26.83514 -24.54071 -23.95857 -23.77678 -23.01182 -22.10929 -21.79197 -20.94097 -19.17119 -18.72739 -18.41668 -17.94196 -17.70808 -17.28567 -16.70055 -16.69660 -16.38609 -16.33782 -16.05599 -15.70375 -15.28949 -15.12714 -14.94432 -14.48704 -14.43300 -14.29064 -14.05611 -13.82813 -13.64665 -13.60796 -13.44637 -12.93807 -12.91192 -12.82552 -12.56546 -12.52400 -12.36807 -12.06110 -11.92583 -11.76636 -11.67145 -11.57565 -11.41727 -11.09751 -10.64838 -10.57950 -10.30353 -9.21117 -8.64915 -8.26170 -6.39964 0.03263 0.61886 0.95711 1.02761 1.25422 1.40810 1.41177 1.52255 1.81743 2.27797 2.37395 2.39260 3.01249 3.08473 3.47523 3.67528 3.71412 3.81105 4.00231 4.05667 4.10335 4.22798 4.23296 4.28708 4.34361 4.35656 4.42903 4.48749 4.64168 4.68028 4.75681 4.78586 4.82101 4.93147 5.10098 5.13081 5.19372 5.34805 5.36538 5.37739 5.53528 5.65369 5.68965 5.70911 5.84691 6.01830 6.23227 6.25488 6.40686 6.52301 6.76618 7.16430 7.31094 8.85258 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.007995 B = 0.002741 C = 0.002102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3501.326788 B =10211.577406 C =13315.905467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.053 3.947 3 O -0.353 6.353 4 C 0.468 3.532 5 O -0.529 6.529 6 C 0.131 3.869 7 N -0.721 5.721 8 C 0.608 3.392 9 O -0.573 6.573 10 C -0.270 4.270 11 C 0.130 3.870 12 N -0.459 5.459 13 C 0.117 3.883 14 C 0.021 3.979 15 C -0.541 4.541 16 H 0.074 0.926 17 C 0.003 3.997 18 N -0.932 5.932 19 Si 0.968 3.032 20 H -0.273 1.273 21 H -0.286 1.286 22 H -0.258 1.258 23 C 0.066 3.934 24 C -0.133 4.133 25 C -0.104 4.104 26 C -0.136 4.136 27 C -0.088 4.088 28 C -0.085 4.085 29 H 0.071 0.929 30 H 0.099 0.901 31 H 0.069 0.931 32 H 0.073 0.927 33 H 0.070 0.930 34 H 0.123 0.877 35 H 0.128 0.872 36 H 0.413 0.587 37 H 0.202 0.798 38 H 0.089 0.911 39 H 0.107 0.893 40 H -0.005 1.005 41 H -0.010 1.010 42 H 0.264 0.736 43 H 0.121 0.879 44 H 0.154 0.846 45 H 0.154 0.846 46 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.945 2.732 -10.382 21.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.020 4.020 3 O -0.269 6.269 4 C 0.312 3.688 5 O -0.419 6.419 6 C 0.007 3.993 7 N -0.377 5.377 8 C 0.399 3.601 9 O -0.453 6.453 10 C -0.281 4.281 11 C -0.005 4.005 12 N -0.137 5.137 13 C -0.003 4.003 14 C -0.016 4.016 15 C -0.580 4.580 16 H 0.092 0.908 17 C -0.196 4.196 18 N -0.571 5.571 19 Si 0.792 3.208 20 H -0.199 1.199 21 H -0.212 1.212 22 H -0.181 1.181 23 C -0.039 4.039 24 C -0.153 4.153 25 C -0.123 4.123 26 C -0.155 4.155 27 C -0.107 4.107 28 C -0.089 4.089 29 H 0.090 0.910 30 H 0.118 0.882 31 H 0.088 0.912 32 H 0.091 0.909 33 H 0.088 0.912 34 H 0.141 0.859 35 H 0.146 0.854 36 H 0.252 0.748 37 H 0.218 0.782 38 H 0.107 0.893 39 H 0.125 0.875 40 H 0.013 0.987 41 H 0.009 0.991 42 H 0.073 0.927 43 H 0.139 0.861 44 H 0.172 0.828 45 H 0.171 0.829 46 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -18.882 2.926 -10.219 21.668 hybrid contribution 1.076 -1.368 0.652 1.858 sum -17.807 1.558 -9.567 20.274 Atomic orbital electron populations 1.21838 0.90334 1.04420 1.03867 1.23368 0.97109 0.78632 1.02904 1.86479 1.22831 1.34229 1.83362 1.23578 0.81420 0.92167 0.71646 1.90692 1.60939 1.43633 1.46622 1.20713 0.80452 0.90459 1.07679 1.45490 1.05670 1.09696 1.76837 1.17009 0.85284 0.83166 0.74641 1.90723 1.73274 1.28828 1.52503 1.19800 0.91803 0.92584 1.23928 1.22584 0.82264 1.00047 0.95637 1.44321 1.06694 1.05057 1.57623 1.22152 0.87287 0.91272 0.99557 1.19246 0.95522 0.95651 0.91227 1.21468 1.17289 1.25457 0.93741 0.90774 1.25977 1.00053 0.98395 0.95152 1.70119 1.43253 1.45138 0.98610 0.85402 0.78826 0.78707 0.77863 1.19878 1.21215 1.18137 1.18610 0.95997 0.83258 1.05985 1.20384 0.96184 0.93775 1.04931 1.21155 0.98643 0.93104 0.99408 1.21277 0.91420 1.00849 1.01933 1.20736 0.99825 0.90842 0.99281 1.19024 0.90895 0.93791 1.05175 0.91039 0.88248 0.91235 0.90884 0.91182 0.85900 0.85415 0.74830 0.78150 0.89252 0.87455 0.98666 0.99135 0.92710 0.86073 0.82825 0.82876 0.85439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 10.29 71.98 0.74 -0.40 16 2 C 0.05 0.70 6.19 71.98 0.45 1.15 16 3 O -0.35 -5.91 10.22 -51.45 -0.53 -6.44 16 4 C 0.47 9.06 8.03 71.23 0.57 9.64 16 5 O -0.53 -13.04 15.42 21.93 0.34 -12.70 16 6 C 0.13 2.41 6.27 85.63 0.54 2.94 16 7 N -0.72 -17.00 5.52 -470.59 -2.60 -19.60 16 8 C 0.61 18.59 7.80 86.51 0.67 19.26 16 9 O -0.57 -20.06 16.16 -4.24 -0.07 -20.12 16 10 C -0.27 -8.98 6.27 -19.01 -0.12 -9.10 16 11 C 0.13 4.04 10.75 83.70 0.90 4.94 16 12 N -0.46 -16.34 2.74 -515.30 -1.41 -17.75 16 13 C 0.12 4.33 5.89 86.38 0.51 4.84 16 14 C 0.02 1.05 5.30 29.85 0.16 1.21 16 15 C -0.54 -28.35 9.11 25.60 0.23 -28.12 16 16 H 0.07 3.58 7.74 -2.91 -0.02 3.56 16 17 C 0.00 0.16 5.46 84.66 0.46 0.62 16 18 N -0.93 -55.25 13.29 21.45 0.28 -54.97 16 19 Si 0.97 42.11 29.54 68.60 2.03 44.14 16 20 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 21 H -0.29 -12.43 7.11 99.48 0.71 -11.73 16 22 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 23 C 0.07 2.42 6.79 38.92 0.26 2.68 16 24 C -0.13 -4.45 9.97 22.37 0.22 -4.23 16 25 C -0.10 -2.89 10.01 22.28 0.22 -2.66 16 26 C -0.14 -3.69 10.03 22.28 0.22 -3.46 16 27 C -0.09 -2.85 9.85 22.40 0.22 -2.63 16 28 C -0.08 -3.05 6.27 -20.08 -0.13 -3.18 16 29 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.10 0.43 8.14 -2.39 -0.02 0.41 16 31 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.07 0.96 8.13 -2.39 -0.02 0.94 16 33 H 0.07 0.97 8.13 -2.38 -0.02 0.95 16 34 H 0.12 2.06 8.14 -2.38 -0.02 2.04 16 35 H 0.13 2.00 8.14 -2.39 -0.02 1.98 16 36 H 0.41 9.20 6.32 -92.71 -0.59 8.62 16 37 H 0.20 4.73 7.38 -2.91 -0.02 4.71 16 38 H 0.09 3.13 8.14 -2.38 -0.02 3.11 16 39 H 0.11 3.44 8.11 -2.39 -0.02 3.42 16 40 H -0.01 -0.27 8.14 -2.38 -0.02 -0.29 16 41 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 42 H 0.26 14.80 8.31 -92.70 -0.77 14.03 16 43 H 0.12 4.01 8.06 -2.91 -0.02 3.98 16 44 H 0.15 3.21 8.06 -2.91 -0.02 3.18 16 45 H 0.15 3.04 8.06 -2.91 -0.02 3.02 16 46 H 0.13 4.04 7.45 -2.91 -0.02 4.02 16 Total: -1.00 -72.80 399.35 4.60 -68.20 By element: Atomic # 1 Polarization: 25.34 SS G_CDS: 0.41 Total: 25.76 kcal Atomic # 6 Polarization: -12.66 SS G_CDS: 6.14 Total: -6.52 kcal Atomic # 7 Polarization: -88.59 SS G_CDS: -3.72 Total: -92.32 kcal Atomic # 8 Polarization: -39.00 SS G_CDS: -0.26 Total: -39.26 kcal Atomic # 14 Polarization: 42.11 SS G_CDS: 2.03 Total: 44.14 kcal Total: -72.80 4.60 -68.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000444032607.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.111 kcal (2) G-P(sol) polarization free energy of solvation -72.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds