Wall clock time and date at job start Wed Apr 1 2020 04:00:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35948 * 116.99762 * 2 1 4 4 C 1.38331 * 120.06361 * 0.02562 * 3 2 1 5 5 C 1.38611 * 120.58714 * 180.02562 * 4 3 2 6 6 C 1.37867 * 120.25074 * 359.97438 * 5 4 3 7 7 C 1.39179 * 119.73252 * 0.02562 * 6 5 4 8 8 C 1.47668 * 134.22579 * 179.97438 * 7 6 5 9 9 C 1.47073 * 127.13651 * 359.97438 * 8 7 6 10 10 O 1.21654 * 119.99761 * 0.02562 * 9 8 7 11 11 N 1.34774 * 119.99861 * 179.97438 * 9 8 7 12 12 C 1.46507 * 119.99788 * 179.72623 * 11 9 8 13 13 H 1.08995 * 109.49608 * 325.27746 * 12 11 9 14 14 C 1.53039 * 109.49464 * 205.21472 * 12 11 9 15 15 C 1.53046 * 109.53432 * 178.68340 * 14 12 11 16 16 C 1.53194 * 109.30998 * 61.36605 * 15 14 12 17 17 N 1.46917 * 108.77837 * 305.36513 * 16 15 14 18 18 C 1.36940 * 120.63071 * 233.61293 * 17 16 15 19 19 H 1.07994 * 119.99976 * 152.62537 * 18 17 16 20 20 C 1.38811 * 119.99647 * 332.62338 * 18 17 16 21 21 N 1.31624 * 119.99497 * 159.35030 * 20 18 17 22 22 Si 1.86797 * 120.00223 * 339.34091 * 20 18 17 23 23 H 1.48503 * 109.46986 * 92.95736 * 22 20 18 24 24 H 1.48498 * 109.47364 * 212.95339 * 22 20 18 25 25 H 1.48499 * 109.47232 * 332.96081 * 22 20 18 26 26 C 1.46940 * 118.76534 * 53.58585 * 17 16 15 27 27 C 1.36073 * 105.72290 * 180.26517 * 8 7 6 28 28 O 1.33771 * 109.83111 * 359.59925 * 27 8 7 29 29 C 1.34951 * 111.33712 * 0.42481 * 28 27 8 30 30 H 1.08998 * 109.46647 * 299.99409 * 1 2 3 31 31 H 1.09000 * 109.47225 * 59.99488 * 1 2 3 32 32 H 1.08997 * 109.46976 * 179.97438 * 1 2 3 33 33 H 1.08000 * 119.70769 * 359.97438 * 4 3 2 34 34 H 1.07998 * 119.87220 * 180.02562 * 5 4 3 35 35 H 1.08004 * 120.13144 * 179.97438 * 6 5 4 36 36 H 0.97001 * 120.00442 * 0.02562 * 11 9 8 37 37 H 1.08997 * 109.46271 * 298.70737 * 14 12 11 38 38 H 1.09005 * 109.46273 * 58.66994 * 14 12 11 39 39 H 1.09003 * 109.49612 * 181.31454 * 15 14 12 40 40 H 1.08996 * 109.49795 * 301.38037 * 15 14 12 41 41 H 1.09001 * 109.58468 * 65.15163 * 16 15 14 42 42 H 1.08997 * 109.58493 * 185.42894 * 16 15 14 43 43 H 0.97001 * 119.99180 * 180.02562 * 21 20 18 44 44 H 1.09006 * 109.61492 * 186.64305 * 26 17 16 45 45 H 1.08994 * 109.55838 * 66.21853 * 26 17 16 46 46 H 1.08000 * 125.08221 * 179.76204 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2940 2.3723 0.0005 5 6 1.9119 3.6130 0.0000 6 6 3.2876 3.7038 -0.0005 7 6 4.0560 2.5434 -0.0011 8 6 5.5069 2.2688 -0.0022 9 6 6.5973 3.2557 -0.0036 10 8 6.3413 4.4450 -0.0035 11 7 7.8802 2.8425 -0.0040 12 6 8.9664 3.8256 -0.0115 13 1 8.6682 4.6926 -0.6007 14 6 10.2196 3.1973 -0.6252 15 6 11.3453 4.2336 -0.6635 16 6 11.6761 4.6752 0.7656 17 7 10.4439 5.1465 1.4121 18 6 10.3901 6.3860 1.9917 19 1 9.4475 6.9080 2.0637 20 6 11.5474 6.9715 2.4866 21 7 11.6012 8.2745 2.6649 22 14 13.0280 5.9103 2.8996 23 1 13.9345 5.8466 1.7250 24 1 13.7536 6.5001 4.0532 25 1 12.5733 4.5404 3.2487 26 6 9.2697 4.2631 1.4249 27 6 5.6256 0.9133 -0.0083 28 8 4.4117 0.3513 -0.0021 29 6 3.4381 1.2858 -0.0011 30 1 -0.3632 0.5137 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3633 -1.0276 -0.0005 33 1 0.2157 2.3114 0.0005 34 1 1.3134 4.5120 0.0009 35 1 3.7671 4.6716 -0.0014 36 1 8.0843 1.8942 -0.0037 37 1 10.5312 2.3448 -0.0218 38 1 9.9991 2.8632 -1.6391 39 1 12.2303 3.7925 -1.1221 40 1 11.0252 5.0969 -1.2468 41 1 12.0821 3.8318 1.3239 42 1 12.4086 5.4819 0.7383 43 1 12.4100 8.6836 3.0104 44 1 8.4126 4.7996 1.8322 45 1 9.4793 3.3864 2.0375 46 1 6.5602 0.3720 -0.0143 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001007346607.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:00:31 Heat of formation + Delta-G solvation = -10.936367 kcal Electronic energy + Delta-G solvation = -29581.934890 eV Core-core repulsion = 25439.518168 eV Total energy + Delta-G solvation = -4142.416722 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.85014 -39.87369 -39.53064 -37.60741 -37.13792 -34.46925 -32.98347 -32.32680 -30.83443 -30.64760 -29.86459 -28.73765 -27.63475 -25.31376 -24.30216 -23.24961 -22.60426 -22.05263 -21.83514 -20.18099 -19.70660 -18.47820 -18.02978 -17.03002 -16.80209 -16.77444 -16.00617 -15.80647 -15.76893 -15.46456 -15.19157 -15.16546 -14.75758 -13.95088 -13.93877 -13.70690 -13.56809 -13.27011 -13.20384 -12.84701 -12.68614 -12.59675 -12.35083 -12.08715 -11.72703 -11.61920 -11.56223 -11.53221 -11.16177 -10.92179 -10.76725 -10.16968 -10.05006 -10.01122 -9.84212 -9.71059 -9.45247 -9.03631 -8.93409 -8.52409 -8.12589 -6.95903 -5.90924 -3.27532 0.54136 0.99958 1.57245 2.31318 2.76941 3.19560 3.23101 3.32638 3.49428 3.52191 3.56540 4.08945 4.34456 4.47905 4.55208 4.66579 4.73993 4.82296 4.89165 4.99113 5.02928 5.03861 5.08946 5.17386 5.26725 5.28397 5.42703 5.51508 5.67359 5.80483 5.81534 5.93194 6.02265 6.08704 6.18292 6.24063 6.30086 6.32629 6.41613 6.47804 6.50691 6.62312 6.65119 6.77350 6.93412 7.01968 7.62017 7.99184 8.33945 8.38821 8.97570 9.75001 10.10416 11.25010 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.022793 B = 0.002283 C = 0.002170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.144191 B =12260.042312 C =12902.661846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.315 6.315 3 C 0.143 3.857 4 C -0.190 4.190 5 C -0.092 4.092 6 C -0.095 4.095 7 C -0.052 4.052 8 C -0.224 4.224 9 C 0.584 3.416 10 O -0.523 6.523 11 N -0.720 5.720 12 C 0.127 3.873 13 H 0.093 0.907 14 C -0.116 4.116 15 C -0.132 4.132 16 C 0.122 3.878 17 N -0.601 5.601 18 C -0.258 4.258 19 H 0.087 0.913 20 C 0.022 3.978 21 N -0.907 5.907 22 Si 0.883 3.117 23 H -0.288 1.288 24 H -0.304 1.304 25 H -0.272 1.272 26 C 0.144 3.856 27 C 0.068 3.932 28 O -0.174 6.174 29 C 0.018 3.982 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.101 0.899 33 H 0.140 0.860 34 H 0.136 0.864 35 H 0.143 0.857 36 H 0.392 0.608 37 H 0.061 0.939 38 H 0.058 0.942 39 H 0.059 0.941 40 H 0.068 0.932 41 H 0.025 0.975 42 H 0.075 0.925 43 H 0.262 0.738 44 H 0.068 0.932 45 H 0.022 0.978 46 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.000 -19.552 -8.449 28.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.228 6.228 3 C 0.097 3.903 4 C -0.209 4.209 5 C -0.111 4.111 6 C -0.113 4.113 7 C -0.053 4.053 8 C -0.229 4.229 9 C 0.370 3.630 10 O -0.399 6.399 11 N -0.370 5.370 12 C 0.022 3.978 13 H 0.111 0.889 14 C -0.154 4.154 15 C -0.172 4.172 16 C -0.004 4.004 17 N -0.325 5.325 18 C -0.386 4.386 19 H 0.105 0.895 20 C -0.176 4.176 21 N -0.550 5.550 22 Si 0.714 3.286 23 H -0.216 1.216 24 H -0.232 1.232 25 H -0.197 1.197 26 C 0.017 3.983 27 C -0.001 4.001 28 O -0.073 6.073 29 C -0.028 4.028 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.120 0.880 33 H 0.158 0.842 34 H 0.154 0.846 35 H 0.161 0.839 36 H 0.225 0.775 37 H 0.079 0.921 38 H 0.076 0.924 39 H 0.078 0.922 40 H 0.087 0.913 41 H 0.043 0.957 42 H 0.093 0.907 43 H 0.072 0.928 44 H 0.087 0.913 45 H 0.040 0.960 46 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -19.095 -18.980 -8.362 28.191 hybrid contribution 0.920 -0.836 0.306 1.281 sum -18.174 -19.816 -8.055 28.069 Atomic orbital electron populations 1.23104 0.77932 1.04211 1.01573 1.86138 1.21680 1.26119 1.88891 1.17646 0.86493 0.85563 1.00572 1.20971 0.99915 0.91086 1.08889 1.20901 0.94114 0.97102 0.98935 1.20701 0.92792 0.98067 0.99767 1.19208 0.91081 0.92839 1.02213 1.21084 0.93179 0.93490 1.15101 1.17028 0.81649 0.87489 0.76798 1.90842 1.83528 1.16528 1.49010 1.45931 1.05438 1.10076 1.75595 1.21733 0.84632 0.91213 1.00255 0.88924 1.21687 0.95115 0.98748 0.99887 1.22001 0.96932 0.98476 0.99755 1.21396 0.90186 0.97974 0.90820 1.44293 1.08015 1.16154 1.64040 1.18953 0.96801 0.90385 1.32471 0.89544 1.25275 0.97764 0.95589 0.99001 1.69850 1.28340 1.08648 1.48184 0.86943 0.83225 0.81235 0.77194 1.21632 1.23183 1.19666 1.21223 0.91190 0.93590 0.92299 1.24513 0.87308 0.92228 0.96075 1.83878 1.13396 1.35268 1.74742 1.18590 0.87523 0.86670 1.10061 0.92358 0.92399 0.88035 0.84190 0.84634 0.83890 0.77504 0.92067 0.92364 0.92204 0.91335 0.95665 0.90744 0.92796 0.91338 0.95965 0.76561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 9.81 101.05 0.99 1.13 16 2 O -0.31 -3.16 10.50 -19.58 -0.21 -3.36 16 3 C 0.14 1.58 6.70 -39.12 -0.26 1.31 16 4 C -0.19 -1.72 9.02 -39.41 -0.36 -2.07 16 5 C -0.09 -0.91 10.03 -39.58 -0.40 -1.30 16 6 C -0.10 -1.21 9.88 -39.37 -0.39 -1.60 16 7 C -0.05 -0.70 6.29 -104.99 -0.66 -1.36 16 8 C -0.22 -2.89 6.31 -103.24 -0.65 -3.54 16 9 C 0.58 8.98 7.77 -12.68 -0.10 8.88 16 10 O -0.52 -10.33 15.94 5.23 0.08 -10.25 16 11 N -0.72 -9.48 5.07 -54.87 -0.28 -9.76 16 12 C 0.13 2.10 2.60 -67.81 -0.18 1.93 16 13 H 0.09 1.81 7.57 -51.93 -0.39 1.42 16 14 C -0.12 -1.65 5.35 -26.69 -0.14 -1.79 16 15 C -0.13 -2.22 6.08 -26.61 -0.16 -2.38 16 16 C 0.12 2.61 4.20 -3.71 -0.02 2.59 16 17 N -0.60 -14.50 2.77 -172.32 -0.48 -14.98 16 18 C -0.26 -7.41 10.03 -15.06 -0.15 -7.56 16 19 H 0.09 2.70 8.05 -52.49 -0.42 2.28 16 20 C 0.02 0.66 5.23 -17.43 -0.09 0.57 16 21 N -0.91 -28.28 13.97 55.49 0.78 -27.51 16 22 Si 0.88 22.48 24.35 -169.99 -4.14 18.35 16 23 H -0.29 -7.02 6.62 56.52 0.37 -6.64 16 24 H -0.30 -7.88 7.11 56.52 0.40 -7.47 16 25 H -0.27 -6.76 6.63 56.52 0.37 -6.39 16 26 C 0.14 2.95 6.10 -3.71 -0.02 2.93 16 27 C 0.07 0.64 11.52 29.95 0.35 0.99 16 28 O -0.17 -2.01 10.53 5.30 0.06 -1.96 16 29 C 0.02 0.23 7.33 -38.45 -0.28 -0.05 16 30 H 0.06 0.24 7.66 -51.93 -0.40 -0.15 16 31 H 0.06 0.23 7.66 -51.93 -0.40 -0.16 16 32 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.14 0.82 6.26 -52.49 -0.33 0.49 16 34 H 0.14 0.97 8.06 -52.49 -0.42 0.54 16 35 H 0.14 1.96 7.53 -52.48 -0.40 1.56 16 36 H 0.39 3.55 7.53 -40.82 -0.31 3.24 16 37 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 41 H 0.03 0.53 7.08 -51.93 -0.37 0.16 16 42 H 0.07 1.76 4.50 -51.93 -0.23 1.53 16 43 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 44 H 0.07 1.55 7.93 -51.93 -0.41 1.14 16 45 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.22 0.96 7.41 -52.49 -0.39 0.57 16 LS Contribution 372.14 15.07 5.61 5.61 Total: -1.00 -36.60 372.14 -7.29 -43.89 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: -6.19 Total: 1.30 kcal Atomic # 6 Polarization: 1.19 SS G_CDS: -2.52 Total: -1.33 kcal Atomic # 7 Polarization: -52.26 SS G_CDS: 0.02 Total: -52.24 kcal Atomic # 8 Polarization: -15.50 SS G_CDS: -0.07 Total: -15.57 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -4.14 Total: 18.35 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -36.60 -7.29 -43.89 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001007346607.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.957 kcal (2) G-P(sol) polarization free energy of solvation -36.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds