Wall clock time and date at job start Wed Apr 1 2020 04:00:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35948 * 116.99762 * 2 1 4 4 C 1.38331 * 120.06361 * 0.02562 * 3 2 1 5 5 C 1.38611 * 120.58714 * 180.02562 * 4 3 2 6 6 C 1.37867 * 120.25074 * 359.97438 * 5 4 3 7 7 C 1.39179 * 119.73252 * 0.02562 * 6 5 4 8 8 C 1.47668 * 134.22579 * 179.97438 * 7 6 5 9 9 C 1.47073 * 127.13651 * 359.97438 * 8 7 6 10 10 O 1.21654 * 119.99761 * 0.02562 * 9 8 7 11 11 N 1.34774 * 119.99861 * 179.97438 * 9 8 7 12 12 C 1.46507 * 119.99788 * 179.72623 * 11 9 8 13 13 H 1.08995 * 109.49608 * 325.27746 * 12 11 9 14 14 C 1.53039 * 109.49464 * 205.21472 * 12 11 9 15 15 C 1.53046 * 109.53432 * 178.68340 * 14 12 11 16 16 C 1.53194 * 109.30998 * 61.36605 * 15 14 12 17 17 N 1.46917 * 108.77837 * 305.36513 * 16 15 14 18 18 C 1.36940 * 120.63071 * 233.61293 * 17 16 15 19 19 H 1.07994 * 119.99976 * 152.62537 * 18 17 16 20 20 C 1.38811 * 119.99647 * 332.62338 * 18 17 16 21 21 N 1.31624 * 119.99497 * 159.35030 * 20 18 17 22 22 Si 1.86797 * 120.00223 * 339.34091 * 20 18 17 23 23 H 1.48503 * 109.46986 * 92.95736 * 22 20 18 24 24 H 1.48498 * 109.47364 * 212.95339 * 22 20 18 25 25 H 1.48499 * 109.47232 * 332.96081 * 22 20 18 26 26 C 1.46940 * 118.76534 * 53.58585 * 17 16 15 27 27 C 1.36073 * 105.72290 * 180.26517 * 8 7 6 28 28 O 1.33771 * 109.83111 * 359.59925 * 27 8 7 29 29 C 1.34951 * 111.33712 * 0.42481 * 28 27 8 30 30 H 1.08998 * 109.46647 * 299.99409 * 1 2 3 31 31 H 1.09000 * 109.47225 * 59.99488 * 1 2 3 32 32 H 1.08997 * 109.46976 * 179.97438 * 1 2 3 33 33 H 1.08000 * 119.70769 * 359.97438 * 4 3 2 34 34 H 1.07998 * 119.87220 * 180.02562 * 5 4 3 35 35 H 1.08004 * 120.13144 * 179.97438 * 6 5 4 36 36 H 0.97001 * 120.00442 * 0.02562 * 11 9 8 37 37 H 1.08997 * 109.46271 * 298.70737 * 14 12 11 38 38 H 1.09005 * 109.46273 * 58.66994 * 14 12 11 39 39 H 1.09003 * 109.49612 * 181.31454 * 15 14 12 40 40 H 1.08996 * 109.49795 * 301.38037 * 15 14 12 41 41 H 1.09001 * 109.58468 * 65.15163 * 16 15 14 42 42 H 1.08997 * 109.58493 * 185.42894 * 16 15 14 43 43 H 0.97001 * 119.99180 * 180.02562 * 21 20 18 44 44 H 1.09006 * 109.61492 * 186.64305 * 26 17 16 45 45 H 1.08994 * 109.55838 * 66.21853 * 26 17 16 46 46 H 1.08000 * 125.08221 * 179.76204 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2940 2.3723 0.0005 5 6 1.9119 3.6130 0.0000 6 6 3.2876 3.7038 -0.0005 7 6 4.0560 2.5434 -0.0011 8 6 5.5069 2.2688 -0.0022 9 6 6.5973 3.2557 -0.0036 10 8 6.3413 4.4450 -0.0035 11 7 7.8802 2.8425 -0.0040 12 6 8.9664 3.8256 -0.0115 13 1 8.6682 4.6926 -0.6007 14 6 10.2196 3.1973 -0.6252 15 6 11.3453 4.2336 -0.6635 16 6 11.6761 4.6752 0.7656 17 7 10.4439 5.1465 1.4121 18 6 10.3901 6.3860 1.9917 19 1 9.4475 6.9080 2.0637 20 6 11.5474 6.9715 2.4866 21 7 11.6012 8.2745 2.6649 22 14 13.0280 5.9103 2.8996 23 1 13.9345 5.8466 1.7250 24 1 13.7536 6.5001 4.0532 25 1 12.5733 4.5404 3.2487 26 6 9.2697 4.2631 1.4249 27 6 5.6256 0.9133 -0.0083 28 8 4.4117 0.3513 -0.0021 29 6 3.4381 1.2858 -0.0011 30 1 -0.3632 0.5137 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3633 -1.0276 -0.0005 33 1 0.2157 2.3114 0.0005 34 1 1.3134 4.5120 0.0009 35 1 3.7671 4.6716 -0.0014 36 1 8.0843 1.8942 -0.0037 37 1 10.5312 2.3448 -0.0218 38 1 9.9991 2.8632 -1.6391 39 1 12.2303 3.7925 -1.1221 40 1 11.0252 5.0969 -1.2468 41 1 12.0821 3.8318 1.3239 42 1 12.4086 5.4819 0.7383 43 1 12.4100 8.6836 3.0104 44 1 8.4126 4.7996 1.8322 45 1 9.4793 3.3864 2.0375 46 1 6.5602 0.3720 -0.0143 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001007346607.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:00:30 Heat of formation + Delta-G solvation = -38.488959 kcal Electronic energy + Delta-G solvation = -29583.129660 eV Core-core repulsion = 25439.518168 eV Total energy + Delta-G solvation = -4143.611492 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -43.70769 -40.89855 -40.51333 -39.10780 -37.95008 -36.01168 -34.43673 -33.61217 -32.67841 -31.44991 -31.01437 -29.85756 -28.14859 -27.22338 -25.42962 -24.21996 -23.74326 -23.50198 -23.04437 -21.44662 -21.00385 -19.43879 -18.89656 -18.74153 -17.76299 -17.60818 -17.42109 -17.02522 -16.78654 -16.47196 -16.23331 -16.18921 -15.93468 -15.62020 -15.35078 -15.07476 -14.84323 -14.56914 -14.29924 -14.14227 -13.97087 -13.73127 -13.37337 -13.30906 -13.23517 -12.80495 -12.59978 -12.51713 -12.43647 -12.27064 -12.21654 -11.83818 -11.67202 -11.49873 -11.35747 -11.14072 -10.91153 -10.77620 -10.21124 -9.76078 -8.98593 -8.90852 -8.18008 -5.51975 -0.28090 0.14448 0.65445 1.29873 1.41972 1.52492 1.53012 1.94622 2.16809 2.25436 2.41052 2.62885 3.04572 3.32677 3.34385 3.48460 3.80201 3.83876 3.97451 4.05014 4.06743 4.09409 4.19473 4.27254 4.33643 4.39619 4.42586 4.43372 4.48428 4.66570 4.70811 4.76660 4.88548 4.93980 5.01025 5.02532 5.05832 5.10240 5.22136 5.23051 5.36223 5.41485 5.48278 5.54380 5.68836 5.83884 6.09866 6.30527 6.56515 6.89327 7.24377 7.59518 7.96776 9.02442 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.022793 B = 0.002283 C = 0.002170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.144191 B =12260.042312 C =12902.661846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.331 6.331 3 C 0.142 3.858 4 C -0.185 4.185 5 C -0.080 4.080 6 C -0.133 4.133 7 C -0.074 4.074 8 C -0.268 4.268 9 C 0.584 3.416 10 O -0.583 6.583 11 N -0.699 5.699 12 C 0.140 3.860 13 H 0.052 0.948 14 C -0.105 4.105 15 C -0.127 4.127 16 C 0.112 3.888 17 N -0.617 5.617 18 C -0.256 4.256 19 H 0.033 0.967 20 C -0.040 4.040 21 N -0.960 5.960 22 Si 0.961 3.039 23 H -0.266 1.266 24 H -0.311 1.311 25 H -0.255 1.255 26 C 0.144 3.856 27 C 0.115 3.885 28 O -0.176 6.176 29 C -0.007 4.007 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.121 0.879 33 H 0.177 0.823 34 H 0.161 0.839 35 H 0.116 0.884 36 H 0.418 0.582 37 H 0.093 0.907 38 H 0.093 0.907 39 H 0.100 0.900 40 H 0.046 0.954 41 H 0.046 0.954 42 H 0.049 0.951 43 H 0.263 0.737 44 H 0.026 0.974 45 H 0.047 0.953 46 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.806 -24.708 -9.554 32.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.246 6.246 3 C 0.096 3.904 4 C -0.203 4.203 5 C -0.098 4.098 6 C -0.151 4.151 7 C -0.076 4.076 8 C -0.273 4.273 9 C 0.373 3.627 10 O -0.463 6.463 11 N -0.351 5.351 12 C 0.034 3.966 13 H 0.071 0.929 14 C -0.143 4.143 15 C -0.167 4.167 16 C -0.012 4.012 17 N -0.343 5.343 18 C -0.385 4.385 19 H 0.051 0.949 20 C -0.234 4.234 21 N -0.606 5.606 22 Si 0.789 3.211 23 H -0.192 1.192 24 H -0.240 1.240 25 H -0.180 1.180 26 C 0.018 3.982 27 C 0.046 3.954 28 O -0.075 6.075 29 C -0.053 4.053 30 H 0.089 0.911 31 H 0.091 0.909 32 H 0.139 0.861 33 H 0.195 0.805 34 H 0.179 0.821 35 H 0.134 0.866 36 H 0.256 0.744 37 H 0.111 0.889 38 H 0.112 0.888 39 H 0.118 0.882 40 H 0.065 0.935 41 H 0.064 0.936 42 H 0.067 0.933 43 H 0.072 0.928 44 H 0.045 0.955 45 H 0.064 0.936 46 H 0.289 0.711 Dipole moment (debyes) X Y Z Total from point charges -18.920 -24.242 -9.502 32.186 hybrid contribution 0.635 0.757 0.636 1.175 sum -18.285 -23.485 -8.866 31.056 Atomic orbital electron populations 1.23472 0.75474 1.06058 1.02910 1.86121 1.24240 1.25614 1.88579 1.17890 0.86268 0.86611 0.99583 1.21349 1.01579 0.89877 1.07504 1.21220 0.93030 0.98773 0.96733 1.20702 0.94374 0.97105 1.02963 1.19488 0.91899 0.93585 1.02606 1.20868 0.92224 0.94557 1.19630 1.17424 0.82662 0.87153 0.75424 1.90819 1.84418 1.19270 1.51831 1.45579 1.03912 1.10863 1.74740 1.21286 0.87000 0.91397 0.96941 0.92933 1.21660 0.91998 0.98376 1.02240 1.21933 0.99614 0.98860 0.96250 1.21565 0.88250 0.97590 0.93752 1.44361 1.10189 1.15143 1.64558 1.18762 0.94950 0.92203 1.32623 0.94912 1.26039 1.01528 0.96706 0.99175 1.70012 1.29665 1.10809 1.50111 0.85697 0.79000 0.79417 0.77020 1.19179 1.24027 1.17950 1.21291 0.88578 0.93072 0.95263 1.25438 0.88159 0.90993 0.90857 1.83898 1.13890 1.35217 1.74460 1.18814 0.88486 0.86302 1.11704 0.91055 0.90922 0.86116 0.80536 0.82096 0.86550 0.74392 0.88868 0.88844 0.88187 0.93472 0.93568 0.93301 0.92833 0.95520 0.93561 0.71094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.11 9.81 113.37 1.11 1.22 16 2 O -0.33 -5.96 10.50 -92.97 -0.98 -6.93 16 3 C 0.14 2.96 6.70 22.57 0.15 3.11 16 4 C -0.18 -3.02 9.02 22.38 0.20 -2.82 16 5 C -0.08 -1.55 10.03 22.27 0.22 -1.33 16 6 C -0.13 -3.68 9.88 22.41 0.22 -3.46 16 7 C -0.07 -2.09 6.29 -20.10 -0.13 -2.22 16 8 C -0.27 -6.91 6.31 -18.97 -0.12 -7.03 16 9 C 0.58 18.56 7.77 86.56 0.67 19.24 16 10 O -0.58 -25.29 15.94 -4.20 -0.07 -25.36 16 11 N -0.70 -17.35 5.07 -445.76 -2.26 -19.61 16 12 C 0.14 4.57 2.60 45.07 0.12 4.68 16 13 H 0.05 2.16 7.57 -2.39 -0.02 2.14 16 14 C -0.10 -2.52 5.35 30.62 0.16 -2.36 16 15 C -0.13 -3.88 6.08 30.67 0.19 -3.69 16 16 C 0.11 4.59 4.20 86.37 0.36 4.95 16 17 N -0.62 -30.31 2.77 -699.09 -1.94 -32.25 16 18 C -0.26 -15.59 10.03 84.03 0.84 -14.75 16 19 H 0.03 2.28 8.05 -2.91 -0.02 2.26 16 20 C -0.04 -2.45 5.23 84.86 0.44 -2.00 16 21 N -0.96 -62.99 13.97 21.65 0.30 -62.69 16 22 Si 0.96 47.07 24.35 68.60 1.67 48.74 16 23 H -0.27 -11.95 6.62 99.48 0.66 -11.29 16 24 H -0.31 -15.52 7.11 99.48 0.71 -14.82 16 25 H -0.26 -11.71 6.63 99.48 0.66 -11.05 16 26 C 0.14 6.00 6.10 86.36 0.53 6.53 16 27 C 0.11 1.85 11.52 67.32 0.78 2.62 16 28 O -0.18 -3.72 10.53 -3.94 -0.04 -3.76 16 29 C -0.01 -0.17 7.33 23.00 0.17 0.00 16 30 H 0.07 0.36 7.66 -2.39 -0.02 0.35 16 31 H 0.07 0.35 7.66 -2.39 -0.02 0.33 16 32 H 0.12 0.44 8.14 -2.39 -0.02 0.42 16 33 H 0.18 1.47 6.26 -2.91 -0.02 1.45 16 34 H 0.16 2.16 8.06 -2.91 -0.02 2.14 16 35 H 0.12 3.72 7.53 -2.91 -0.02 3.70 16 36 H 0.42 5.79 7.53 -92.71 -0.70 5.09 16 37 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 38 H 0.09 1.72 8.14 -2.38 -0.02 1.70 16 39 H 0.10 2.32 8.14 -2.39 -0.02 2.30 16 40 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 41 H 0.05 1.72 7.08 -2.39 -0.02 1.70 16 42 H 0.05 2.24 4.50 -2.39 -0.01 2.22 16 43 H 0.26 16.20 8.31 -92.71 -0.77 15.43 16 44 H 0.03 1.29 7.93 -2.38 -0.02 1.27 16 45 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 46 H 0.27 0.84 7.41 -2.91 -0.02 0.81 16 Total: -1.00 -90.81 372.14 2.85 -87.96 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: 0.23 Total: 11.19 kcal Atomic # 6 Polarization: -3.22 SS G_CDS: 5.93 Total: 2.70 kcal Atomic # 7 Polarization: -110.65 SS G_CDS: -3.89 Total: -114.54 kcal Atomic # 8 Polarization: -34.96 SS G_CDS: -1.08 Total: -36.05 kcal Atomic # 14 Polarization: 47.07 SS G_CDS: 1.67 Total: 48.74 kcal Total: -90.81 2.85 -87.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001007346607.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.475 kcal (2) G-P(sol) polarization free energy of solvation -90.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds