Wall clock time and date at job start Wed Apr 1 2020 03:53:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35967 * 116.99669 * 2 1 4 4 C 1.39128 * 119.96174 * 359.97438 * 3 2 1 5 5 C 1.37790 * 120.60028 * 180.02562 * 4 3 2 6 6 C 1.38971 * 120.04653 * 359.97438 * 5 4 3 7 7 O 1.34991 * 133.03146 * 180.02562 * 6 5 4 8 8 C 1.33793 * 111.34412 * 180.02562 * 7 6 5 9 9 C 1.36072 * 109.85214 * 359.97438 * 8 7 6 10 10 C 1.47071 * 127.13545 * 179.97438 * 9 8 7 11 11 O 1.21649 * 119.99591 * 180.02562 * 10 9 8 12 12 N 1.34771 * 119.99708 * 0.02562 * 10 9 8 13 13 C 1.46505 * 119.99622 * 180.02562 * 12 10 9 14 14 C 1.52997 * 109.47212 * 179.97438 * 13 12 10 15 15 H 1.09000 * 110.64140 * 305.69956 * 14 13 12 16 16 C 1.55156 * 110.72546 * 182.55775 * 14 13 12 17 17 C 1.54901 * 101.58691 * 206.13627 * 16 14 13 18 18 N 1.47432 * 104.83094 * 37.00621 * 17 16 14 19 19 C 1.36938 * 125.64779 * 155.90940 * 18 17 16 20 20 H 1.08001 * 120.00067 * 179.97438 * 19 18 17 21 21 C 1.38812 * 120.00002 * 359.97149 * 19 18 17 22 22 N 1.31622 * 120.00079 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 120.00271 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47103 * 89.99803 * 23 21 19 25 25 H 1.48501 * 109.47132 * 210.00354 * 23 21 19 26 26 H 1.48502 * 109.46564 * 330.00192 * 23 21 19 27 27 C 1.47318 * 108.73760 * 335.71623 * 18 17 16 28 28 C 1.40220 * 119.35064 * 0.29892 * 6 5 4 29 29 C 1.38296 * 119.95373 * 180.02562 * 3 2 1 30 30 H 1.08994 * 109.47835 * 300.00600 * 1 2 3 31 31 H 1.09001 * 109.46799 * 60.00880 * 1 2 3 32 32 H 1.09007 * 109.47013 * 180.02562 * 1 2 3 33 33 H 1.08004 * 119.69585 * 0.04825 * 4 3 2 34 34 H 1.07996 * 119.97728 * 180.02562 * 5 4 3 35 35 H 1.07993 * 125.07206 * 179.97438 * 8 7 6 36 36 H 0.96996 * 120.00772 * 359.97438 * 12 10 9 37 37 H 1.09002 * 109.47068 * 299.99729 * 13 12 10 38 38 H 1.09001 * 109.47372 * 59.99816 * 13 12 10 39 39 H 1.09007 * 111.00070 * 324.21396 * 16 14 13 40 40 H 1.09004 * 111.00200 * 88.01878 * 16 14 13 41 41 H 1.09001 * 110.37023 * 155.84838 * 17 16 14 42 42 H 1.08998 * 110.36851 * 278.06473 * 17 16 14 43 43 H 0.96999 * 120.00396 * 179.97438 * 22 21 19 44 44 H 1.08997 * 110.06555 * 241.87043 * 27 18 17 45 45 H 1.09000 * 109.84738 * 120.60970 * 27 18 17 46 46 H 1.08001 * 120.21316 * 359.97438 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2115 0.0000 4 6 1.2876 2.3778 -0.0005 5 6 1.8994 3.6124 -0.0011 6 6 3.2862 3.7018 -0.0005 7 8 4.1420 4.7458 -0.0004 8 6 5.4144 4.3324 -0.0004 9 6 5.4584 2.9724 0.0001 10 6 6.6590 2.1229 -0.0003 11 8 6.5469 0.9116 -0.0002 12 7 7.8832 2.6865 -0.0006 13 6 9.0791 1.8403 -0.0015 14 6 10.3286 2.7232 -0.0024 15 1 10.2984 3.4310 -0.8307 16 6 11.6136 1.8560 -0.0681 17 6 12.6516 2.7864 0.6075 18 7 11.9076 3.4613 1.6866 19 6 12.4575 4.0007 2.8188 20 1 11.8241 4.4765 3.5529 21 6 13.8290 3.9361 3.0229 22 7 14.6010 3.3567 2.1280 23 14 14.5791 4.6713 4.5676 24 1 14.6220 3.6407 5.6359 25 1 15.9580 5.1381 4.2744 26 1 13.7535 5.8196 5.0205 27 6 10.4748 3.4638 1.3437 28 6 4.0507 2.5264 -0.0058 29 6 3.4273 1.2829 -0.0005 30 1 -0.3634 0.5139 0.8898 31 1 -0.3633 0.5137 -0.8901 32 1 -0.3633 -1.0277 0.0005 33 1 0.2094 2.3148 -0.0002 34 1 1.3007 4.5113 -0.0011 35 1 6.2777 4.9812 -0.0007 36 1 7.9726 3.6523 -0.0010 37 1 9.0793 1.2106 0.8883 38 1 9.0785 1.2113 -0.8917 39 1 11.4907 0.9321 0.4971 40 1 11.8905 1.6457 -1.1012 41 1 13.4729 2.2012 1.0214 42 1 13.0298 3.5160 -0.1085 43 1 15.5594 3.3118 2.2704 44 1 10.1159 4.4881 1.2442 45 1 9.9085 2.9437 2.1163 46 1 4.0182 0.3788 -0.0005 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028680461.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:53:47 Heat of formation + Delta-G solvation = -13.778952 kcal Electronic energy + Delta-G solvation = -28794.912527 eV Core-core repulsion = 24652.372542 eV Total energy + Delta-G solvation = -4142.539985 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.86932 -40.00599 -39.48564 -37.61222 -36.86808 -34.67134 -33.27419 -32.45237 -30.71785 -29.94253 -29.41592 -28.20225 -27.48075 -25.68127 -24.24293 -23.76101 -22.66800 -22.22704 -20.57440 -19.93421 -19.59180 -18.54120 -18.20995 -17.20914 -16.84184 -16.63472 -16.21142 -16.00047 -15.88209 -15.67489 -15.23521 -14.75156 -14.50262 -14.34128 -13.77827 -13.71387 -13.56611 -13.32347 -13.21277 -12.85409 -12.78064 -12.52629 -12.27173 -11.78312 -11.71773 -11.51390 -11.28476 -11.14981 -10.96791 -10.81032 -10.49756 -10.43336 -10.17438 -10.05710 -9.98259 -9.78367 -9.52975 -9.03862 -8.69636 -8.66220 -8.32211 -6.85014 -5.66644 -3.08391 0.40721 0.99294 1.47890 2.30979 2.86789 3.09986 3.13389 3.39284 3.44149 3.46007 3.46119 4.09962 4.28178 4.36913 4.47526 4.58781 4.69990 4.74925 4.75343 4.94388 5.02017 5.07715 5.15997 5.24139 5.38278 5.42463 5.51330 5.53716 5.68457 5.78118 5.86599 5.88450 5.98299 6.04410 6.07834 6.12315 6.32981 6.39971 6.52237 6.57483 6.61521 6.70016 6.88480 7.02635 7.49216 7.50204 7.61067 7.84545 8.20259 8.35197 9.20794 9.81582 10.46309 11.37273 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.020633 B = 0.001915 C = 0.001857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.730768 B =14618.552139 C =15071.226913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.313 6.313 3 C 0.114 3.886 4 C -0.177 4.177 5 C -0.064 4.064 6 C 0.012 3.988 7 O -0.181 6.181 8 C 0.076 3.924 9 C -0.229 4.229 10 C 0.585 3.415 11 O -0.535 6.535 12 N -0.721 5.721 13 C 0.134 3.866 14 C -0.115 4.115 15 H 0.076 0.924 16 C -0.135 4.135 17 C 0.152 3.848 18 N -0.604 5.604 19 C -0.223 4.223 20 H 0.077 0.923 21 C -0.012 4.012 22 N -0.922 5.922 23 Si 0.915 3.085 24 H -0.288 1.288 25 H -0.290 1.290 26 H -0.282 1.282 27 C 0.140 3.860 28 C -0.052 4.052 29 C -0.098 4.098 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.101 0.899 33 H 0.141 0.859 34 H 0.138 0.862 35 H 0.220 0.780 36 H 0.398 0.602 37 H 0.072 0.928 38 H 0.068 0.932 39 H 0.063 0.937 40 H 0.061 0.939 41 H 0.107 0.893 42 H 0.012 0.988 43 H 0.252 0.748 44 H 0.018 0.982 45 H 0.025 0.975 46 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.775 -0.438 -7.982 28.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.226 6.226 3 C 0.069 3.931 4 C -0.196 4.196 5 C -0.082 4.082 6 C -0.034 4.034 7 O -0.080 6.080 8 C 0.007 3.993 9 C -0.234 4.234 10 C 0.372 3.628 11 O -0.413 6.413 12 N -0.372 5.372 13 C 0.011 3.989 14 C -0.134 4.134 15 H 0.094 0.906 16 C -0.174 4.174 17 C 0.027 3.973 18 N -0.331 5.331 19 C -0.351 4.351 20 H 0.095 0.905 21 C -0.207 4.207 22 N -0.571 5.571 23 Si 0.745 3.255 24 H -0.216 1.216 25 H -0.216 1.216 26 H -0.208 1.208 27 C 0.014 3.986 28 C -0.054 4.054 29 C -0.116 4.116 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.119 0.881 33 H 0.159 0.841 34 H 0.156 0.844 35 H 0.236 0.764 36 H 0.232 0.768 37 H 0.090 0.910 38 H 0.086 0.914 39 H 0.082 0.918 40 H 0.079 0.921 41 H 0.125 0.875 42 H 0.030 0.970 43 H 0.063 0.937 44 H 0.036 0.964 45 H 0.043 0.957 46 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -27.656 -1.216 -7.874 28.781 hybrid contribution 0.341 1.061 0.766 1.352 sum -27.315 -0.155 -7.108 28.225 Atomic orbital electron populations 1.23090 0.78304 1.04193 1.01304 1.86130 1.21343 1.26260 1.88898 1.18738 0.91779 0.84374 0.98197 1.21017 1.00262 0.90954 1.07332 1.19650 0.88776 0.98294 1.01502 1.19442 0.91845 0.84345 1.07782 1.83858 1.14932 1.34126 1.75117 1.24570 0.85179 0.94334 0.95201 1.20992 0.93251 0.93315 1.15810 1.17054 0.81930 0.87206 0.76638 1.90794 1.86603 1.13898 1.49972 1.45908 1.05538 1.10518 1.75188 1.21498 0.82093 0.92957 1.02376 1.22455 0.93954 0.97892 0.99120 0.90555 1.23006 0.95269 0.98944 1.00207 1.21929 0.93779 0.93038 0.88554 1.44573 1.00198 1.67311 1.20978 1.19073 0.90732 1.29611 0.95713 0.90545 1.24795 0.96011 1.01291 0.98643 1.69794 1.03928 1.48789 1.34554 0.86071 0.78488 0.78588 0.82334 1.21573 1.21649 1.20773 1.21397 0.88185 0.96218 0.92783 1.19059 0.91075 0.93132 1.02101 1.19773 0.91109 0.97648 1.03109 0.92562 0.92581 0.88071 0.84092 0.84413 0.76410 0.76803 0.90979 0.91406 0.91782 0.92077 0.87517 0.97010 0.93717 0.96416 0.95668 0.83522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 9.81 101.05 0.99 1.13 16 2 O -0.31 -3.11 10.49 -19.64 -0.21 -3.32 16 3 C 0.11 1.21 6.68 -39.23 -0.26 0.95 16 4 C -0.18 -1.44 9.01 -39.41 -0.36 -1.79 16 5 C -0.06 -0.54 10.06 -39.47 -0.40 -0.94 16 6 C 0.01 0.13 7.39 -38.57 -0.28 -0.16 16 7 O -0.18 -1.82 10.53 5.13 0.05 -1.77 16 8 C 0.08 0.68 11.52 29.95 0.35 1.03 16 9 C -0.23 -2.80 6.31 -103.24 -0.65 -3.45 16 10 C 0.58 8.39 7.80 -12.68 -0.10 8.29 16 11 O -0.53 -9.62 16.28 5.23 0.09 -9.53 16 12 N -0.72 -9.05 5.42 -61.49 -0.33 -9.38 16 13 C 0.13 1.93 5.00 -4.04 -0.02 1.91 16 14 C -0.11 -1.84 2.98 -88.78 -0.26 -2.11 16 15 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 16 C -0.13 -2.45 6.54 -24.59 -0.16 -2.62 16 17 C 0.15 3.61 5.89 -2.53 -0.01 3.59 16 18 N -0.60 -15.20 3.40 -169.83 -0.58 -15.78 16 19 C -0.22 -6.17 10.28 -15.06 -0.15 -6.32 16 20 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 21 C -0.01 -0.34 5.49 -17.43 -0.10 -0.43 16 22 N -0.92 -26.71 10.09 55.49 0.56 -26.15 16 23 Si 0.91 21.99 29.55 -169.99 -5.02 16.96 16 24 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 25 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 26 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 27 C 0.14 2.76 6.67 -2.90 -0.02 2.74 16 28 C -0.05 -0.67 6.29 -104.98 -0.66 -1.33 16 29 C -0.10 -1.26 9.82 -39.24 -0.39 -1.64 16 30 H 0.06 0.22 7.65 -51.93 -0.40 -0.18 16 31 H 0.06 0.21 7.66 -51.93 -0.40 -0.18 16 32 H 0.10 0.35 8.14 -51.92 -0.42 -0.07 16 33 H 0.14 0.70 6.27 -52.48 -0.33 0.37 16 34 H 0.14 0.78 8.06 -52.49 -0.42 0.36 16 35 H 0.22 1.01 7.41 -52.49 -0.39 0.62 16 36 H 0.40 3.89 7.32 -40.82 -0.30 3.59 16 37 H 0.07 1.17 8.01 -51.93 -0.42 0.75 16 38 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.06 1.17 8.05 -51.93 -0.42 0.75 16 40 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.11 2.88 5.88 -51.93 -0.31 2.57 16 42 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 43 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 44 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 45 H 0.03 0.51 7.73 -51.93 -0.40 0.11 16 46 H 0.15 2.08 7.53 -52.49 -0.40 1.68 16 LS Contribution 381.13 15.07 5.74 5.74 Total: -1.00 -34.93 381.13 -8.44 -43.37 By element: Atomic # 1 Polarization: 7.23 SS G_CDS: -6.25 Total: 0.98 kcal Atomic # 6 Polarization: 1.36 SS G_CDS: -2.49 Total: -1.13 kcal Atomic # 7 Polarization: -50.97 SS G_CDS: -0.35 Total: -51.32 kcal Atomic # 8 Polarization: -14.55 SS G_CDS: -0.07 Total: -14.61 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -34.93 -8.44 -43.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028680461.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.594 kcal (2) G-P(sol) polarization free energy of solvation -34.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds