Wall clock time and date at job start Wed Apr 1 2020 03:12:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.28473 * 124.88253 * 2 1 4 4 C 1.31803 * 110.07474 * 180.02562 * 3 2 1 5 5 C 1.47714 * 126.51756 * 180.02562 * 4 3 2 6 6 O 1.21577 * 119.99955 * 180.02562 * 5 4 3 7 7 N 1.34770 * 119.99913 * 0.02616 * 5 4 3 8 8 C 1.46501 * 119.99856 * 179.97438 * 7 5 4 9 9 C 1.53000 * 109.47377 * 180.02562 * 8 7 5 10 10 H 1.08999 * 109.51331 * 304.90036 * 9 8 7 11 11 C 1.52874 * 109.58764 * 184.88093 * 9 8 7 12 12 N 1.47146 * 108.61038 * 187.92443 * 11 9 8 13 13 C 1.36938 * 120.98166 * 230.49961 * 12 11 9 14 14 H 1.08004 * 120.00362 * 26.46603 * 13 12 11 15 15 C 1.38811 * 120.00369 * 206.46273 * 13 12 11 16 16 N 1.31624 * 119.99894 * 16.40694 * 15 13 12 17 17 Si 1.86793 * 120.00437 * 196.13282 * 15 13 12 18 18 H 1.48501 * 109.47251 * 90.00080 * 17 15 13 19 19 H 1.48504 * 109.47315 * 209.99870 * 17 15 13 20 20 H 1.48503 * 109.47374 * 330.00111 * 17 15 13 21 21 C 1.47152 * 118.03553 * 50.22601 * 12 11 9 22 22 C 1.53291 * 108.38463 * 309.71610 * 21 12 11 23 23 O 1.42958 * 109.22268 * 52.30270 * 22 21 12 24 24 C 1.41506 * 106.96555 * 0.26749 * 4 3 2 25 25 C 1.35037 * 124.88986 * 180.02562 * 2 1 3 26 26 C 1.50696 * 126.38174 * 359.97438 * 25 2 1 27 27 F 1.39906 * 109.47421 * 300.00003 * 26 25 2 28 28 F 1.39895 * 109.47307 * 60.00482 * 26 25 2 29 29 H 1.08992 * 109.47229 * 89.97547 * 1 2 3 30 30 H 1.09000 * 109.46519 * 209.97241 * 1 2 3 31 31 H 1.09002 * 109.47392 * 329.96942 * 1 2 3 32 32 H 0.96992 * 120.00266 * 0.02562 * 7 5 4 33 33 H 1.09007 * 109.47306 * 60.00172 * 8 7 5 34 34 H 1.09002 * 109.47255 * 300.00314 * 8 7 5 35 35 H 1.09004 * 109.61801 * 68.10492 * 11 9 8 36 36 H 1.09002 * 109.52448 * 307.69194 * 11 9 8 37 37 H 0.97001 * 120.00132 * 179.97438 * 16 15 13 38 38 H 1.08995 * 109.68009 * 69.44637 * 21 12 11 39 39 H 1.08998 * 109.67837 * 189.95158 * 21 12 11 40 40 H 1.09002 * 109.50962 * 172.22809 * 22 21 12 41 41 H 1.08996 * 109.51452 * 292.32644 * 22 21 12 42 42 H 1.07998 * 127.25063 * 179.73620 * 24 4 3 43 43 H 1.08997 * 109.46978 * 180.02562 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1997 1.0539 0.0000 4 6 3.4740 0.7170 -0.0006 5 6 4.6272 1.6401 -0.0002 6 8 5.7597 1.1980 -0.0013 7 7 4.4239 2.9724 0.0013 8 6 5.5677 3.8878 0.0022 9 6 5.0645 5.3327 0.0045 10 1 4.3893 5.4845 -0.8376 11 6 6.2511 6.2889 -0.1171 12 7 5.7675 7.6647 0.0784 13 6 6.0796 8.6552 -0.8143 14 1 6.2951 8.4067 -1.8430 15 6 6.1189 9.9785 -0.3971 16 7 6.1795 10.2623 0.8867 17 14 6.0935 11.3565 -1.6579 18 1 4.6879 11.7460 -1.9373 19 1 6.8353 12.5279 -1.1260 20 1 6.7369 10.8913 -2.9128 21 6 4.9335 7.9436 1.2583 22 6 3.8066 6.9058 1.3100 23 8 4.3700 5.5946 1.2264 24 6 3.5273 -0.6970 -0.0073 25 6 2.2374 -1.1076 -0.0005 26 6 1.7535 -2.5348 -0.0006 27 9 0.9796 -2.7650 1.1420 28 9 0.9789 -2.7646 -1.1426 29 1 -0.3633 0.0004 -1.0276 30 1 -0.3632 -0.8903 0.5134 31 1 -0.3634 0.8897 0.5143 32 1 3.5204 3.3251 0.0025 33 1 6.1724 3.7148 -0.8881 34 1 6.1725 3.7127 0.8919 35 1 6.6977 6.1939 -1.1069 36 1 6.9923 6.0484 0.6452 37 1 6.2073 11.1870 1.1783 38 1 5.5397 7.8728 2.1613 39 1 4.5086 8.9442 1.1791 40 1 3.2601 7.0082 2.2476 41 1 3.1266 7.0646 0.4731 42 1 4.4109 -1.3179 -0.0134 43 1 2.6101 -3.2088 -0.0006 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035444091.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:12:15 Heat of formation + Delta-G solvation = -71.950464 kcal Electronic energy + Delta-G solvation = -29670.457543 eV Core-core repulsion = 25003.458273 eV Total energy + Delta-G solvation = -4666.999270 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.145 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -49.66711 -47.64809 -43.13755 -39.50121 -38.38648 -34.93325 -34.29323 -33.95934 -32.52556 -31.54371 -30.67430 -28.28623 -27.42726 -26.57356 -25.48913 -23.45199 -23.07194 -21.78638 -21.60018 -20.27407 -19.55080 -18.52334 -17.98275 -17.84792 -16.98921 -16.77244 -16.64695 -16.18454 -15.93324 -15.56698 -14.99372 -14.80862 -14.54898 -14.37001 -14.35988 -14.14509 -14.00719 -13.75027 -13.42508 -13.30165 -13.24154 -13.08489 -12.93907 -12.72256 -12.33499 -12.21656 -11.57634 -11.26517 -11.12613 -10.87511 -10.73807 -10.41609 -10.27275 -10.22110 -9.98971 -9.86566 -9.66534 -9.55158 -9.07039 -8.97152 -8.56054 -6.76647 -5.85467 -3.29783 1.12380 1.50038 1.87233 2.82555 3.21851 3.28551 3.33609 3.40551 3.41935 3.49013 3.77588 4.06414 4.23890 4.32337 4.41836 4.55283 4.59791 4.87817 4.89158 5.01709 5.12912 5.21561 5.32030 5.48993 5.51299 5.80772 5.82429 5.87378 6.02752 6.09875 6.15076 6.28016 6.36659 6.47817 6.49806 6.74964 7.09549 7.27751 7.50887 7.61077 7.69689 7.85407 8.17646 8.32277 9.10095 9.72612 10.29568 11.22701 Molecular weight = 344.14amu Principal moments of inertia in cm(-1) A = 0.026285 B = 0.001928 C = 0.001892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.970638 B =14522.514298 C =14795.036631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.258 5.258 3 N -0.234 5.234 4 C -0.012 4.012 5 C 0.602 3.398 6 O -0.535 6.535 7 N -0.704 5.704 8 C 0.130 3.870 9 C 0.065 3.935 10 H 0.059 0.941 11 C 0.122 3.878 12 N -0.594 5.594 13 C -0.255 4.255 14 H 0.069 0.931 15 C 0.002 3.998 16 N -0.903 5.903 17 Si 0.906 3.094 18 H -0.287 1.287 19 H -0.290 1.290 20 H -0.278 1.278 21 C 0.139 3.861 22 C 0.040 3.960 23 O -0.389 6.389 24 C -0.129 4.129 25 C -0.080 4.080 26 C 0.349 3.651 27 F -0.195 7.195 28 F -0.195 7.195 29 H 0.092 0.908 30 H 0.098 0.902 31 H 0.105 0.895 32 H 0.409 0.591 33 H 0.084 0.916 34 H 0.079 0.921 35 H 0.064 0.936 36 H 0.031 0.969 37 H 0.255 0.745 38 H 0.029 0.971 39 H 0.094 0.906 40 H 0.081 0.919 41 H 0.041 0.959 42 H 0.173 0.827 43 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.680 -25.078 -1.265 28.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.047 5.047 3 N -0.072 5.072 4 C -0.171 4.171 5 C 0.385 3.615 6 O -0.410 6.410 7 N -0.355 5.355 8 C 0.006 3.994 9 C 0.005 3.995 10 H 0.077 0.923 11 C -0.005 4.005 12 N -0.318 5.318 13 C -0.384 4.384 14 H 0.087 0.913 15 C -0.197 4.197 16 N -0.547 5.547 17 Si 0.736 3.264 18 H -0.214 1.214 19 H -0.217 1.217 20 H -0.204 1.204 21 C 0.014 3.986 22 C -0.038 4.038 23 O -0.308 6.308 24 C -0.158 4.158 25 C -0.205 4.205 26 C 0.293 3.707 27 F -0.176 7.176 28 F -0.176 7.176 29 H 0.111 0.889 30 H 0.116 0.884 31 H 0.124 0.876 32 H 0.245 0.755 33 H 0.102 0.898 34 H 0.097 0.903 35 H 0.083 0.917 36 H 0.048 0.952 37 H 0.065 0.935 38 H 0.047 0.953 39 H 0.112 0.888 40 H 0.099 0.901 41 H 0.059 0.941 42 H 0.191 0.809 43 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -12.714 -24.393 -1.050 27.527 hybrid contribution -0.212 0.564 -0.710 0.931 sum -12.926 -23.829 -1.760 27.166 Atomic orbital electron populations 1.22390 0.72426 1.06180 1.05193 1.45327 1.08058 1.02007 1.49327 1.73645 1.03174 1.13167 1.17171 1.22014 0.90862 0.93874 1.10334 1.16756 0.86264 0.81593 0.76880 1.90808 1.22249 1.77146 1.50806 1.45802 1.11331 1.05016 1.73303 1.21499 0.88009 0.86635 1.03225 1.22725 0.96093 0.92928 0.87764 0.92328 1.21359 0.93038 0.86155 0.99986 1.44046 1.57001 1.03721 1.27008 1.19208 1.43131 0.86086 0.90004 0.91315 1.25063 1.00564 0.98092 0.95962 1.70034 1.53427 1.18095 1.13140 0.86228 0.77672 0.81749 0.80735 1.21396 1.21663 1.20357 1.21445 0.90303 0.97549 0.89338 1.23320 0.96723 0.83578 1.00190 1.87798 1.72300 1.32974 1.37762 1.21572 0.95749 0.94096 1.04340 1.21753 0.92489 0.90497 1.15732 1.19842 0.88274 0.91130 0.71419 1.93041 1.78086 1.95376 1.51128 1.93049 1.78043 1.95413 1.51084 0.88941 0.88357 0.87636 0.75522 0.89757 0.90288 0.91710 0.95158 0.93489 0.95316 0.88804 0.90060 0.94111 0.80926 0.83984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.42 11.04 59.85 0.66 1.08 16 2 N -0.26 -2.40 3.70 -63.86 -0.24 -2.63 16 3 N -0.23 -2.76 11.67 33.42 0.39 -2.37 16 4 C -0.01 -0.15 7.13 -82.76 -0.59 -0.74 16 5 C 0.60 8.88 7.82 -12.39 -0.10 8.78 16 6 O -0.53 -9.18 16.93 5.30 0.09 -9.09 16 7 N -0.70 -10.07 5.50 -61.29 -0.34 -10.40 16 8 C 0.13 1.98 5.34 -4.04 -0.02 1.96 16 9 C 0.06 1.14 2.80 -26.80 -0.07 1.06 16 10 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 11 C 0.12 2.53 6.00 -3.75 -0.02 2.50 16 12 N -0.59 -14.82 3.05 -172.09 -0.53 -15.34 16 13 C -0.26 -6.90 9.65 -15.06 -0.15 -7.05 16 14 H 0.07 1.81 7.88 -52.48 -0.41 1.40 16 15 C 0.00 0.05 4.95 -17.43 -0.09 -0.03 16 16 N -0.90 -25.92 11.15 55.49 0.62 -25.30 16 17 Si 0.91 21.39 29.58 -169.99 -5.03 16.36 16 18 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 19 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 20 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 21 C 0.14 3.31 5.44 -3.54 -0.02 3.29 16 22 C 0.04 0.77 6.98 37.31 0.26 1.03 16 23 O -0.39 -7.37 10.33 -35.23 -0.36 -7.74 16 24 C -0.13 -1.28 10.71 -39.36 -0.42 -1.70 16 25 C -0.08 -0.68 6.35 -82.21 -0.52 -1.20 16 26 C 0.35 1.94 5.27 36.00 0.19 2.13 16 27 F -0.20 -1.31 16.30 2.25 0.04 -1.28 16 28 F -0.19 -1.31 17.25 2.25 0.04 -1.27 16 29 H 0.09 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.10 0.41 6.83 -51.93 -0.35 0.06 16 31 H 0.11 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.41 5.55 8.20 -40.82 -0.33 5.22 16 33 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.08 1.28 8.14 -51.93 -0.42 0.85 16 35 H 0.06 1.27 7.96 -51.93 -0.41 0.86 16 36 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 38 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.09 2.44 6.16 -51.93 -0.32 2.12 16 40 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 41 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.17 1.34 8.06 -52.49 -0.42 0.92 16 43 H 0.14 0.28 8.11 -51.93 -0.42 -0.14 16 LS Contribution 371.06 15.07 5.59 5.59 Total: -1.00 -33.75 371.06 -6.24 -39.98 By element: Atomic # 1 Polarization: 7.99 SS G_CDS: -5.62 Total: 2.37 kcal Atomic # 6 Polarization: 12.00 SS G_CDS: -0.89 Total: 11.11 kcal Atomic # 7 Polarization: -55.95 SS G_CDS: -0.09 Total: -56.05 kcal Atomic # 8 Polarization: -16.55 SS G_CDS: -0.27 Total: -16.83 kcal Atomic # 9 Polarization: -2.63 SS G_CDS: 0.08 Total: -2.55 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.03 Total: 16.36 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.75 -6.24 -39.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035444091.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.966 kcal (2) G-P(sol) polarization free energy of solvation -33.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds