Wall clock time and date at job start Wed Apr 1 2020 03:44:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34768 * 120.00329 * 2 1 4 4 O 1.21283 * 119.99798 * 180.02562 * 3 2 1 5 5 C 1.50703 * 120.00069 * 0.02562 * 3 2 1 6 6 N 1.46496 * 109.46993 * 179.97438 * 5 3 2 7 7 C 1.34953 * 126.03427 * 124.71588 * 6 5 3 8 8 C 1.35319 * 107.74365 * 179.83720 * 7 6 5 9 9 C 1.39868 * 107.92355 * 0.42821 * 8 7 6 10 10 C 1.50696 * 125.90051 * 179.75697 * 9 8 7 11 11 F 1.39899 * 109.47474 * 299.99450 * 10 9 8 12 12 F 1.39903 * 109.47207 * 59.99963 * 10 9 8 13 13 N 1.30838 * 108.20076 * 359.73472 * 9 8 7 14 14 C 1.46508 * 119.99632 * 180.02562 * 2 1 3 15 15 H 1.09000 * 110.77590 * 183.23892 * 14 2 1 16 16 C 1.54326 * 110.71770 * 306.47738 * 14 2 1 17 17 N 1.47021 * 107.27002 * 140.55507 * 16 14 2 18 18 C 1.36934 * 125.64668 * 181.01725 * 17 16 14 19 19 H 1.08003 * 120.00238 * 0.02562 * 18 17 16 20 20 C 1.38814 * 119.99973 * 180.02562 * 18 17 16 21 21 N 1.31618 * 120.00207 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00168 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.46925 * 60.00571 * 22 20 18 24 24 H 1.48504 * 109.47268 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.47647 * 300.00713 * 22 20 18 26 26 C 1.47421 * 108.70450 * 1.06211 * 17 16 14 27 27 C 1.54917 * 104.83002 * 335.86832 * 26 17 16 28 28 H 1.09004 * 111.00194 * 278.93638 * 27 26 17 29 29 O 1.42899 * 111.00384 * 155.09110 * 27 26 17 30 30 H 1.09004 * 109.47377 * 270.00252 * 1 2 3 31 31 H 1.09001 * 109.47089 * 29.99273 * 1 2 3 32 32 H 1.08998 * 109.48007 * 149.99589 * 1 2 3 33 33 H 1.08996 * 109.46928 * 299.99839 * 5 3 2 34 34 H 1.09000 * 109.47008 * 60.00373 * 5 3 2 35 35 H 1.07995 * 126.12803 * 0.02562 * 7 6 5 36 36 H 1.08002 * 126.04088 * 180.15897 * 8 7 6 37 37 H 1.09004 * 109.47209 * 179.97438 * 10 9 8 38 38 H 1.08996 * 109.88384 * 21.13690 * 16 14 2 39 39 H 1.09002 * 110.00880 * 260.04782 * 16 14 2 40 40 H 0.96992 * 120.00536 * 179.97438 * 21 20 18 41 41 H 1.09002 * 110.36865 * 217.03325 * 26 17 16 42 42 H 1.08994 * 110.46657 * 94.75473 * 26 17 16 43 43 H 0.96699 * 114.00294 * 61.44663 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3517 1.1670 -0.0005 5 6 1.3855 2.4723 0.0006 6 7 2.3375 3.5857 0.0011 7 6 2.3811 4.5934 -0.8955 8 6 3.3976 5.4145 -0.5440 9 6 4.0020 4.8854 0.6011 10 6 5.1802 5.4763 1.3316 11 9 6.2776 5.5469 0.4667 12 9 4.8551 6.7615 1.7785 13 7 3.3674 3.7892 0.9287 14 6 2.1974 -1.2688 -0.0006 15 1 3.2719 -1.0950 0.0571 16 6 1.7272 -2.1712 1.1597 17 7 1.6775 -3.5489 0.6487 18 6 1.2884 -4.6511 1.3620 19 1 0.9828 -4.5471 2.3927 20 6 1.2866 -5.9021 0.7604 21 7 1.6594 -6.0289 -0.4955 22 14 0.7565 -7.4058 1.7336 23 1 -0.6436 -7.2280 2.1957 24 1 0.8440 -8.6106 0.8699 25 1 1.6480 -7.5743 2.9092 26 6 2.1169 -3.5472 -0.7585 27 6 1.8434 -2.1064 -1.2577 28 1 0.7955 -1.9795 -1.5295 29 8 2.6985 -1.7729 -2.3530 30 1 -0.3634 0.0000 1.0277 31 1 -0.3633 0.8901 -0.5137 32 1 -0.3635 -0.8899 -0.5139 33 1 0.7585 2.5302 -0.8891 34 1 0.7592 2.5299 0.8909 35 1 1.7209 4.7230 -1.7403 36 1 3.6932 6.3164 -1.0593 37 1 5.4305 4.8474 2.1860 38 1 0.7356 -1.8627 1.4909 39 1 2.4311 -2.1088 1.9896 40 1 1.6586 -6.9030 -0.9158 41 1 1.5371 -4.2658 -1.3379 42 1 3.1803 -3.7766 -0.8259 43 1 2.5807 -2.3366 -3.1298 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047406475.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:44:29 Heat of formation + Delta-G solvation = -51.118207 kcal Electronic energy + Delta-G solvation = -30267.061299 eV Core-core repulsion = 25600.965383 eV Total energy + Delta-G solvation = -4666.095916 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.145 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -49.17758 -47.18840 -41.59357 -39.98077 -37.92490 -35.34202 -34.88256 -33.94681 -32.03230 -30.68750 -29.38114 -28.39751 -27.42587 -26.80862 -25.81057 -24.33716 -21.82231 -21.13181 -20.58958 -20.33669 -19.01932 -17.90120 -17.54979 -17.40669 -17.35938 -17.15486 -16.63931 -16.39942 -15.98375 -15.43928 -14.95854 -14.63028 -14.09456 -14.07422 -13.86526 -13.75541 -13.63016 -13.55867 -13.41344 -13.21755 -13.00087 -12.94837 -12.58589 -12.42284 -12.24040 -11.84178 -11.56945 -11.54517 -11.30694 -11.06772 -10.96874 -10.88227 -10.28750 -10.20307 -10.03975 -9.80433 -9.64185 -9.35742 -8.93092 -8.80086 -8.51392 -7.02277 -5.80149 -3.23841 1.45774 1.90259 2.29604 2.49886 2.87973 3.32237 3.37159 3.38129 3.46244 3.93675 4.14319 4.25640 4.35528 4.37680 4.58491 4.62218 4.67507 4.83893 4.94769 5.16172 5.19128 5.31506 5.36977 5.38532 5.48037 5.51485 5.59857 5.71760 5.80575 5.98154 6.03761 6.08842 6.35426 6.49903 6.54787 6.77463 7.24478 7.24574 7.34307 7.44705 7.63185 8.06802 8.09932 8.18816 9.04710 9.65299 10.27111 11.23687 Molecular weight = 344.14amu Principal moments of inertia in cm(-1) A = 0.022331 B = 0.002207 C = 0.002171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.583963 B =12682.268018 C =12891.493760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.598 5.598 3 C 0.500 3.500 4 O -0.508 6.508 5 C 0.115 3.885 6 N -0.347 5.347 7 C 0.058 3.942 8 C -0.239 4.239 9 C -0.014 4.014 10 C 0.360 3.640 11 F -0.190 7.190 12 F -0.193 7.193 13 N -0.224 5.224 14 C 0.138 3.862 15 H 0.112 0.888 16 C 0.132 3.868 17 N -0.598 5.598 18 C -0.227 4.227 19 H 0.080 0.920 20 C -0.009 4.009 21 N -0.923 5.923 22 Si 0.919 3.081 23 H -0.284 1.284 24 H -0.289 1.289 25 H -0.284 1.284 26 C 0.128 3.872 27 C 0.064 3.936 28 H 0.060 0.940 29 O -0.564 6.564 30 H 0.063 0.937 31 H 0.066 0.934 32 H 0.083 0.917 33 H 0.129 0.871 34 H 0.118 0.882 35 H 0.182 0.818 36 H 0.154 0.846 37 H 0.128 0.872 38 H 0.033 0.967 39 H 0.032 0.968 40 H 0.255 0.745 41 H 0.112 0.888 42 H 0.025 0.975 43 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.761 21.438 -2.175 21.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.332 5.332 3 C 0.285 3.715 4 O -0.382 6.382 5 C -0.010 4.010 6 N -0.130 5.130 7 C -0.086 4.086 8 C -0.268 4.268 9 C -0.181 4.181 10 C 0.304 3.696 11 F -0.172 7.172 12 F -0.175 7.175 13 N -0.047 5.047 14 C 0.035 3.965 15 H 0.130 0.870 16 C 0.005 3.995 17 N -0.326 5.326 18 C -0.354 4.354 19 H 0.098 0.902 20 C -0.204 4.204 21 N -0.571 5.571 22 Si 0.749 3.251 23 H -0.210 1.210 24 H -0.215 1.215 25 H -0.211 1.211 26 C 0.002 3.998 27 C 0.003 3.997 28 H 0.078 0.922 29 O -0.369 6.369 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.102 0.898 33 H 0.146 0.854 34 H 0.136 0.864 35 H 0.199 0.801 36 H 0.172 0.828 37 H 0.145 0.855 38 H 0.051 0.949 39 H 0.050 0.950 40 H 0.066 0.934 41 H 0.130 0.870 42 H 0.043 0.957 43 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -3.084 20.617 -0.982 20.870 hybrid contribution -0.560 -0.594 -0.634 1.034 sum -3.644 20.024 -1.616 20.417 Atomic orbital electron populations 1.21877 0.79561 1.03424 1.02436 1.47746 1.06901 1.05636 1.72915 1.20312 0.88459 0.84895 0.77863 1.90799 1.13232 1.86448 1.47698 1.21695 0.89498 0.83378 1.06412 1.48078 1.24675 1.19223 1.21042 1.22580 1.00672 0.89359 0.96023 1.21240 1.00420 1.04728 1.00430 1.22606 1.00091 0.96208 0.99238 1.19200 0.79763 0.80869 0.89753 1.93032 1.54724 1.96548 1.72860 1.93018 1.93039 1.41900 1.89498 1.77377 0.99333 1.15155 1.12882 1.22176 0.98144 0.81131 0.95066 0.87028 1.21520 0.98318 0.85867 0.93817 1.44259 1.78037 1.01249 1.09065 1.19037 1.37218 0.84495 0.94692 0.90203 1.24814 1.01395 0.97645 0.96570 1.69724 1.53564 1.22756 1.11087 0.86095 0.78396 0.81917 0.78735 1.21037 1.21476 1.21057 1.22587 0.99244 0.91393 0.86578 1.23750 0.92323 0.97637 0.85986 0.92189 1.86447 1.64159 1.60301 1.25978 0.91829 0.91507 0.89817 0.85371 0.86371 0.80097 0.82844 0.85462 0.94895 0.94991 0.93446 0.86995 0.95695 0.77765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.69 8.92 59.85 0.53 1.22 16 2 N -0.60 -8.53 2.89 -171.83 -0.50 -9.03 16 3 C 0.50 7.32 7.70 -10.99 -0.08 7.23 16 4 O -0.51 -9.99 15.08 5.55 0.08 -9.91 16 5 C 0.12 1.08 5.54 -5.19 -0.03 1.05 16 6 N -0.35 -4.11 3.40 -62.55 -0.21 -4.33 16 7 C 0.06 0.55 11.45 -17.22 -0.20 0.35 16 8 C -0.24 -2.56 10.74 -40.01 -0.43 -2.99 16 9 C -0.01 -0.18 6.65 -82.41 -0.55 -0.72 16 10 C 0.36 3.85 5.79 36.00 0.21 4.05 16 11 F -0.19 -2.28 17.32 2.25 0.04 -2.24 16 12 F -0.19 -2.08 17.32 2.25 0.04 -2.04 16 13 N -0.22 -3.25 11.64 33.67 0.39 -2.86 16 14 C 0.14 2.55 3.09 -66.09 -0.20 2.34 16 15 H 0.11 2.39 7.01 -51.93 -0.36 2.03 16 16 C 0.13 2.66 6.87 -3.06 -0.02 2.64 16 17 N -0.60 -14.64 3.39 -170.07 -0.58 -15.22 16 18 C -0.23 -6.03 10.27 -15.06 -0.15 -6.19 16 19 H 0.08 2.05 7.83 -52.48 -0.41 1.63 16 20 C -0.01 -0.23 5.49 -17.43 -0.10 -0.33 16 21 N -0.92 -25.72 10.09 55.49 0.56 -25.16 16 22 Si 0.92 21.24 29.55 -169.99 -5.02 16.22 16 23 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 24 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 25 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 26 C 0.13 2.97 5.62 -2.53 -0.01 2.95 16 27 C 0.06 1.19 3.97 -24.58 -0.10 1.09 16 28 H 0.06 1.03 6.39 -51.93 -0.33 0.70 16 29 O -0.56 -10.12 13.47 -35.23 -0.47 -10.60 16 30 H 0.06 0.57 7.87 -51.93 -0.41 0.16 16 31 H 0.07 0.39 6.44 -51.93 -0.33 0.06 16 32 H 0.08 0.93 6.40 -51.93 -0.33 0.60 16 33 H 0.13 0.69 7.33 -51.93 -0.38 0.31 16 34 H 0.12 0.84 8.11 -51.93 -0.42 0.42 16 35 H 0.18 0.90 8.06 -52.49 -0.42 0.48 16 36 H 0.15 1.32 8.06 -52.49 -0.42 0.89 16 37 H 0.13 1.10 8.14 -51.93 -0.42 0.67 16 38 H 0.03 0.62 6.71 -51.93 -0.35 0.27 16 39 H 0.03 0.68 8.14 -51.93 -0.42 0.25 16 40 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 41 H 0.11 2.84 5.88 -51.93 -0.31 2.54 16 42 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 43 H 0.38 5.21 9.11 45.56 0.42 5.62 16 LS Contribution 365.51 15.07 5.51 5.51 Total: -1.00 -36.25 365.51 -5.77 -42.01 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: -4.47 Total: 4.91 kcal Atomic # 6 Polarization: 13.85 SS G_CDS: -1.13 Total: 12.72 kcal Atomic # 7 Polarization: -56.25 SS G_CDS: -0.33 Total: -56.59 kcal Atomic # 8 Polarization: -20.11 SS G_CDS: -0.39 Total: -20.50 kcal Atomic # 9 Polarization: -4.35 SS G_CDS: 0.08 Total: -4.28 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -36.25 -5.77 -42.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047406475.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.105 kcal (2) G-P(sol) polarization free energy of solvation -36.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds