Wall clock time and date at job start Wed Apr 1 2020 03:44:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34768 * 120.00329 * 2 1 4 4 O 1.21283 * 119.99798 * 180.02562 * 3 2 1 5 5 C 1.50703 * 120.00069 * 0.02562 * 3 2 1 6 6 C 1.50704 * 109.46942 * 179.97438 * 5 3 2 7 7 C 1.34000 * 124.91811 * 89.72269 * 6 5 3 8 8 C 1.46786 * 106.18222 * 179.89265 * 7 6 5 9 9 C 1.39405 * 134.37052 * 180.11013 * 8 7 6 10 10 C 1.36733 * 119.71965 * 180.27040 * 9 8 7 11 11 C 1.38741 * 120.41627 * 0.02562 * 10 9 8 12 12 C 1.37856 * 120.68781 * 359.97438 * 11 10 9 13 13 C 1.38943 * 119.81477 * 359.97438 * 12 11 10 14 14 O 1.34448 * 124.92423 * 270.02300 * 6 5 3 15 15 C 1.46508 * 119.99632 * 180.02562 * 2 1 3 16 16 H 1.09000 * 110.77590 * 183.23892 * 15 2 1 17 17 C 1.54326 * 110.71770 * 306.47738 * 15 2 1 18 18 N 1.47021 * 107.27002 * 140.55507 * 17 15 2 19 19 C 1.36934 * 125.64668 * 181.01725 * 18 17 15 20 20 H 1.08003 * 120.00238 * 0.02562 * 19 18 17 21 21 C 1.38814 * 119.99973 * 180.02562 * 19 18 17 22 22 N 1.31618 * 120.00207 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00168 * 179.97438 * 21 19 18 24 24 H 1.48507 * 109.46813 * 90.00297 * 23 21 19 25 25 H 1.48498 * 109.47523 * 210.00481 * 23 21 19 26 26 H 1.48502 * 109.47237 * 330.00853 * 23 21 19 27 27 C 1.47421 * 108.70450 * 1.06211 * 18 17 15 28 28 C 1.54917 * 104.83002 * 335.86832 * 27 18 17 29 29 H 1.09004 * 111.00194 * 278.93638 * 28 27 18 30 30 O 1.42899 * 111.00384 * 155.09110 * 28 27 18 31 31 H 1.09004 * 109.47377 * 270.00252 * 1 2 3 32 32 H 1.09001 * 109.47089 * 29.99273 * 1 2 3 33 33 H 1.08998 * 109.48007 * 149.99589 * 1 2 3 34 34 H 1.08996 * 109.46928 * 299.99839 * 5 3 2 35 35 H 1.09000 * 109.47008 * 60.00373 * 5 3 2 36 36 H 1.07995 * 126.90673 * 0.02562 * 7 6 5 37 37 H 1.08003 * 120.13918 * 0.25923 * 9 8 7 38 38 H 1.07998 * 119.79288 * 179.97438 * 10 9 8 39 39 H 1.07999 * 119.66038 * 180.02562 * 11 10 9 40 40 H 1.07997 * 120.09212 * 180.02562 * 12 11 10 41 41 H 1.08996 * 109.88384 * 21.13690 * 17 15 2 42 42 H 1.09002 * 110.00880 * 260.04782 * 17 15 2 43 43 H 0.96992 * 120.00536 * 179.97438 * 22 21 19 44 44 H 1.09002 * 110.36865 * 217.03325 * 27 18 17 45 45 H 1.08994 * 110.46657 * 94.75473 * 27 18 17 46 46 H 0.96699 * 114.00294 * 61.44663 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3517 1.1670 -0.0005 5 6 1.3855 2.4723 0.0006 6 6 2.3649 3.6176 0.0011 7 6 2.8674 4.1976 -1.0974 8 6 3.7671 5.2571 -0.6254 9 6 4.5750 6.2023 -1.2556 10 6 5.3171 7.0697 -0.5028 11 6 5.2709 7.0139 0.8827 12 6 4.4778 6.0861 1.5235 13 6 3.7151 5.1962 0.7772 14 8 2.8655 4.2018 1.1037 15 6 2.1974 -1.2688 -0.0006 16 1 3.2719 -1.0950 0.0571 17 6 1.7272 -2.1712 1.1597 18 7 1.6775 -3.5489 0.6487 19 6 1.2884 -4.6511 1.3620 20 1 0.9828 -4.5471 2.3927 21 6 1.2866 -5.9021 0.7604 22 7 1.6594 -6.0289 -0.4955 23 14 0.7565 -7.4058 1.7336 24 1 -0.7071 -7.6044 1.5796 25 1 1.4745 -8.6024 1.2260 26 1 1.0805 -7.2059 3.1690 27 6 2.1169 -3.5472 -0.7585 28 6 1.8434 -2.1064 -1.2577 29 1 0.7955 -1.9795 -1.5295 30 8 2.6985 -1.7729 -2.3530 31 1 -0.3634 0.0000 1.0277 32 1 -0.3633 0.8901 -0.5137 33 1 -0.3635 -0.8899 -0.5139 34 1 0.7585 2.5302 -0.8891 35 1 0.7592 2.5299 0.8909 36 1 2.6520 3.9391 -2.1236 37 1 4.6148 6.2492 -2.3339 38 1 5.9437 7.8021 -0.9898 39 1 5.8617 7.7052 1.4654 40 1 4.4489 6.0515 2.6025 41 1 0.7356 -1.8627 1.4909 42 1 2.4311 -2.1088 1.9896 43 1 1.6586 -6.9030 -0.9158 44 1 1.5371 -4.2658 -1.3379 45 1 3.1803 -3.7766 -0.8259 46 1 2.5807 -2.3366 -3.1298 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047478247.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:44:19 Heat of formation + Delta-G solvation = -9.996888 kcal Electronic energy + Delta-G solvation = -29654.099678 eV Core-core repulsion = 25511.723695 eV Total energy + Delta-G solvation = -4142.375983 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.59556 -39.98860 -38.13737 -37.77252 -35.25172 -34.80149 -33.48198 -32.14436 -31.41206 -30.57855 -28.84023 -27.69528 -27.22657 -26.44929 -24.42165 -23.18482 -22.17732 -21.47507 -20.53817 -20.39526 -18.88787 -17.57600 -17.50753 -17.16019 -16.96380 -16.61408 -16.06754 -15.78049 -15.47564 -15.36938 -14.77651 -14.32751 -13.95301 -13.93804 -13.71033 -13.45512 -13.24180 -13.18132 -12.92206 -12.76938 -12.45921 -12.38254 -12.31828 -12.16129 -11.91655 -11.76686 -11.48333 -11.25730 -11.10788 -11.00793 -10.86578 -10.29147 -10.22283 -9.99348 -9.78787 -9.75122 -9.30459 -8.78065 -8.76980 -8.40973 -8.28601 -6.98187 -5.76836 -3.20278 0.72573 1.19842 2.13663 2.50238 2.68161 3.13176 3.33848 3.39505 3.41526 3.55174 4.12180 4.37245 4.47532 4.51192 4.67250 4.72284 4.82656 4.92935 4.94403 5.03206 5.08954 5.21837 5.26878 5.27841 5.36821 5.45607 5.54228 5.56475 5.61552 5.68105 5.80899 5.87536 6.02190 6.06459 6.07350 6.10959 6.23961 6.27985 6.44102 6.48883 6.55750 6.84614 7.04960 7.29140 7.45240 7.51185 7.67289 8.12190 8.21687 8.25726 9.08286 9.68840 10.31036 11.27021 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.026178 B = 0.002115 C = 0.002074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.362392 B =13234.150360 C =13499.665597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.599 5.599 3 C 0.515 3.485 4 O -0.526 6.526 5 C -0.067 4.067 6 C 0.060 3.940 7 C -0.194 4.194 8 C -0.126 4.126 9 C -0.071 4.071 10 C -0.139 4.139 11 C -0.098 4.098 12 C -0.107 4.107 13 C 0.056 3.944 14 O -0.188 6.188 15 C 0.137 3.863 16 H 0.112 0.888 17 C 0.131 3.869 18 N -0.599 5.599 19 C -0.224 4.224 20 H 0.080 0.920 21 C -0.010 4.010 22 N -0.923 5.923 23 Si 0.918 3.082 24 H -0.288 1.288 25 H -0.290 1.290 26 H -0.281 1.281 27 C 0.128 3.872 28 C 0.064 3.936 29 H 0.061 0.939 30 O -0.564 6.564 31 H 0.061 0.939 32 H 0.069 0.931 33 H 0.080 0.920 34 H 0.127 0.873 35 H 0.115 0.885 36 H 0.158 0.842 37 H 0.126 0.874 38 H 0.128 0.872 39 H 0.133 0.867 40 H 0.131 0.869 41 H 0.034 0.966 42 H 0.032 0.968 43 H 0.254 0.746 44 H 0.112 0.888 45 H 0.025 0.975 46 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.483 23.884 -2.315 24.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.332 5.332 3 C 0.302 3.698 4 O -0.402 6.402 5 C -0.106 4.106 6 C 0.012 3.988 7 C -0.213 4.213 8 C -0.127 4.127 9 C -0.089 4.089 10 C -0.157 4.157 11 C -0.116 4.116 12 C -0.125 4.125 13 C 0.008 3.992 14 O -0.089 6.089 15 C 0.033 3.967 16 H 0.130 0.870 17 C 0.004 3.996 18 N -0.327 5.327 19 C -0.352 4.352 20 H 0.098 0.902 21 C -0.206 4.206 22 N -0.571 5.571 23 Si 0.748 3.252 24 H -0.215 1.215 25 H -0.216 1.216 26 H -0.206 1.206 27 C 0.002 3.998 28 C 0.003 3.997 29 H 0.078 0.922 30 O -0.368 6.368 31 H 0.080 0.920 32 H 0.088 0.912 33 H 0.099 0.901 34 H 0.145 0.855 35 H 0.133 0.867 36 H 0.175 0.825 37 H 0.144 0.856 38 H 0.145 0.855 39 H 0.151 0.849 40 H 0.149 0.851 41 H 0.051 0.949 42 H 0.050 0.950 43 H 0.065 0.935 44 H 0.130 0.870 45 H 0.043 0.957 46 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -0.712 24.030 -1.636 24.096 hybrid contribution -0.490 -1.340 -0.003 1.426 sum -1.202 22.691 -1.639 22.781 Atomic orbital electron populations 1.21858 0.79588 1.03406 1.02299 1.47740 1.06921 1.05671 1.72866 1.20169 0.88044 0.84689 0.76920 1.90756 1.13684 1.86935 1.48805 1.20310 0.95733 0.87888 1.06701 1.21424 0.97982 0.95491 0.83885 1.22168 1.01234 0.98577 0.99281 1.19941 1.00855 0.98832 0.93078 1.20291 0.94983 0.93650 1.00017 1.20753 1.00808 1.00254 0.93898 1.20900 0.98201 0.97824 0.94677 1.19954 0.97581 0.95153 0.99813 1.19609 0.94622 0.91293 0.93631 1.83926 1.50304 1.40775 1.33934 1.22162 0.98182 0.81353 0.94959 0.87047 1.21531 0.98331 0.85852 0.93878 1.44273 1.77997 1.01281 1.09102 1.19084 1.36959 0.84488 0.94692 0.90170 1.24816 1.01498 0.97644 0.96595 1.69740 1.53682 1.22607 1.11100 0.86021 0.78034 0.82203 0.78918 1.21490 1.21564 1.20632 1.22585 0.99202 0.91475 0.86557 1.23749 0.92356 0.97580 0.86023 0.92174 1.86450 1.64140 1.60277 1.25943 0.92030 0.91233 0.90086 0.85499 0.86657 0.82479 0.85565 0.85452 0.84890 0.85102 0.94862 0.95041 0.93537 0.87027 0.95720 0.77840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.78 8.92 59.85 0.53 1.32 16 2 N -0.60 -9.10 2.89 -171.83 -0.50 -9.60 16 3 C 0.52 8.01 7.67 -10.99 -0.08 7.92 16 4 O -0.53 -10.68 15.41 5.55 0.09 -10.59 16 5 C -0.07 -0.71 4.76 -29.03 -0.14 -0.85 16 6 C 0.06 0.79 5.72 -35.80 -0.20 0.59 16 7 C -0.19 -2.45 11.01 -37.62 -0.41 -2.87 16 8 C -0.13 -1.63 6.40 -105.16 -0.67 -2.31 16 9 C -0.07 -0.74 10.05 -39.69 -0.40 -1.14 16 10 C -0.14 -1.22 9.98 -39.94 -0.40 -1.62 16 11 C -0.10 -0.86 10.01 -39.54 -0.40 -1.25 16 12 C -0.11 -1.15 10.07 -39.46 -0.40 -1.54 16 13 C 0.06 0.76 7.42 -38.47 -0.29 0.47 16 14 O -0.19 -2.74 10.58 3.91 0.04 -2.70 16 15 C 0.14 2.61 3.09 -66.09 -0.20 2.41 16 16 H 0.11 2.44 7.01 -51.93 -0.36 2.08 16 17 C 0.13 2.72 6.87 -3.06 -0.02 2.70 16 18 N -0.60 -14.92 3.39 -170.07 -0.58 -15.49 16 19 C -0.22 -6.05 10.27 -15.06 -0.15 -6.21 16 20 H 0.08 2.09 7.83 -52.48 -0.41 1.68 16 21 C -0.01 -0.27 5.49 -17.43 -0.10 -0.37 16 22 N -0.92 -26.00 10.09 55.49 0.56 -25.44 16 23 Si 0.92 21.48 29.55 -169.99 -5.02 16.45 16 24 H -0.29 -6.66 7.11 56.52 0.40 -6.25 16 25 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 26 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 27 C 0.13 3.02 5.62 -2.53 -0.01 3.00 16 28 C 0.06 1.22 3.97 -24.58 -0.10 1.12 16 29 H 0.06 1.08 6.39 -51.93 -0.33 0.74 16 30 O -0.56 -10.34 13.47 -35.23 -0.47 -10.81 16 31 H 0.06 0.61 7.87 -51.93 -0.41 0.20 16 32 H 0.07 0.51 6.44 -51.93 -0.33 0.18 16 33 H 0.08 0.97 6.40 -51.93 -0.33 0.64 16 34 H 0.13 0.92 7.40 -51.93 -0.38 0.54 16 35 H 0.12 0.95 8.11 -51.93 -0.42 0.53 16 36 H 0.16 1.64 8.06 -52.49 -0.42 1.22 16 37 H 0.13 1.04 8.06 -52.48 -0.42 0.61 16 38 H 0.13 0.77 8.06 -52.49 -0.42 0.34 16 39 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 40 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 41 H 0.03 0.64 6.71 -51.93 -0.35 0.29 16 42 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.25 6.94 8.31 -40.82 -0.34 6.61 16 44 H 0.11 2.88 5.88 -51.93 -0.31 2.58 16 45 H 0.02 0.65 8.14 -51.93 -0.42 0.22 16 46 H 0.37 5.33 9.11 45.56 0.42 5.75 16 LS Contribution 378.04 15.07 5.70 5.70 Total: -1.00 -35.41 378.04 -8.95 -44.36 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: -5.32 Total: 6.75 kcal Atomic # 6 Polarization: 4.82 SS G_CDS: -3.44 Total: 1.37 kcal Atomic # 7 Polarization: -50.02 SS G_CDS: -0.51 Total: -50.53 kcal Atomic # 8 Polarization: -23.76 SS G_CDS: -0.35 Total: -24.11 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -35.41 -8.95 -44.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047478247.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.364 kcal (2) G-P(sol) polarization free energy of solvation -35.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds