Wall clock time and date at job start Wed Apr 1 2020 03:07:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34256 * 125.75763 * 2 1 4 4 C 1.38046 * 107.42105 * 179.73618 * 3 2 1 5 5 C 1.47429 * 126.41373 * 180.25866 * 4 3 2 6 6 O 1.21608 * 119.99382 * 179.97438 * 5 4 3 7 7 N 1.34774 * 120.00368 * 359.97438 * 5 4 3 8 8 C 1.46496 * 119.99990 * 180.02562 * 7 5 4 9 9 C 1.53002 * 109.47018 * 179.97438 * 8 7 5 10 10 H 1.08999 * 109.67956 * 59.09601 * 9 8 7 11 11 C 1.53293 * 109.67786 * 179.61531 * 9 8 7 12 12 O 1.42966 * 109.21741 * 172.02543 * 11 9 8 13 13 C 1.42968 * 114.16890 * 297.41339 * 12 11 9 14 14 C 1.53302 * 109.21839 * 62.58558 * 13 12 11 15 15 N 1.47151 * 109.67889 * 298.57990 * 9 8 7 16 16 C 1.36934 * 120.98599 * 9.71254 * 15 9 8 17 17 H 1.08007 * 119.99585 * 329.55332 * 16 15 9 18 18 C 1.38809 * 120.00325 * 149.55618 * 16 15 9 19 19 N 1.31614 * 120.00332 * 163.24115 * 18 16 15 20 20 Si 1.86800 * 119.99749 * 343.23288 * 18 16 15 21 21 H 1.48500 * 109.46950 * 88.92581 * 20 18 16 22 22 H 1.48501 * 109.47119 * 208.92149 * 20 18 16 23 23 H 1.48494 * 109.47294 * 328.92759 * 20 18 16 24 24 C 1.41284 * 107.16672 * 0.26168 * 4 3 2 25 25 C 1.50702 * 125.98998 * 179.97438 * 24 4 3 26 26 F 1.39905 * 109.46846 * 300.00231 * 25 24 4 27 27 F 1.39900 * 109.46791 * 59.99571 * 25 24 4 28 28 N 1.30451 * 108.02955 * 359.97438 * 24 4 3 29 29 H 1.08994 * 109.47401 * 89.99995 * 1 2 3 30 30 H 1.08997 * 109.47247 * 210.00698 * 1 2 3 31 31 H 1.09001 * 109.46987 * 330.00258 * 1 2 3 32 32 H 1.08005 * 126.29169 * 359.97438 * 3 2 1 33 33 H 0.97003 * 119.99804 * 359.97438 * 7 5 4 34 34 H 1.09004 * 109.46577 * 299.99542 * 8 7 5 35 35 H 1.08999 * 109.47111 * 59.99581 * 8 7 5 36 36 H 1.08997 * 109.51388 * 291.94456 * 11 9 8 37 37 H 1.08993 * 109.51413 * 52.05265 * 11 9 8 38 38 H 1.08991 * 109.51329 * 182.50490 * 13 12 11 39 39 H 1.09003 * 109.51287 * 302.66454 * 13 12 11 40 40 H 1.08997 * 109.68259 * 67.41471 * 14 13 12 41 41 H 1.08996 * 109.67913 * 187.97725 * 14 13 12 42 42 H 0.96999 * 120.00459 * 179.97438 * 19 18 16 43 43 H 1.08997 * 109.47609 * 179.97438 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2495 1.0895 0.0000 4 6 3.5599 0.6552 0.0061 5 6 4.7638 1.5061 0.0136 6 8 5.8681 0.9968 0.0190 7 7 4.6406 2.8482 0.0146 8 6 5.8370 3.6936 0.0216 9 6 5.4210 5.1660 0.0206 10 1 4.8093 5.3752 0.8982 11 6 6.6696 6.0551 0.0376 12 8 6.2796 7.4176 -0.1507 13 6 5.6514 7.6783 -1.4082 14 6 4.3506 6.8721 -1.4992 15 7 4.6548 5.4636 -1.1999 16 6 4.2385 4.4600 -2.0333 17 1 4.8211 3.5548 -2.1214 18 6 3.0678 4.6059 -2.7648 19 7 2.8320 3.8192 -3.7932 20 14 1.8271 5.9189 -2.2894 21 1 2.1557 7.1870 -2.9888 22 1 0.4643 5.4769 -2.6803 23 1 1.8748 6.1367 -0.8213 24 6 3.5311 -0.7573 0.0036 25 6 4.7321 -1.6676 0.0078 26 9 5.5075 -1.4218 -1.1305 27 9 5.4967 -1.4255 1.1540 28 7 2.2826 -1.1357 -0.0029 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3633 -0.8899 0.5139 31 1 -0.3633 0.8900 0.5138 32 1 1.9167 2.1170 -0.0004 33 1 3.7597 3.2543 0.0100 34 1 6.4257 3.4826 0.9143 35 1 6.4347 3.4846 -0.8657 36 1 7.1777 5.9510 0.9962 37 1 7.3420 5.7539 -0.7656 38 1 5.4270 8.7417 -1.4896 39 1 6.3198 7.3834 -2.2172 40 1 3.6310 7.2535 -0.7749 41 1 3.9383 6.9530 -2.5049 42 1 2.0138 3.9209 -4.3041 43 1 4.4010 -2.7061 0.0049 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050954821.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:07:58 Heat of formation + Delta-G solvation = -58.082325 kcal Electronic energy + Delta-G solvation = -31913.985740 eV Core-core repulsion = 27247.587838 eV Total energy + Delta-G solvation = -4666.397902 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.145 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -48.56493 -46.58633 -41.35729 -39.17905 -38.21866 -35.42801 -33.81015 -33.56614 -31.89438 -31.24932 -30.19212 -28.39646 -27.54988 -26.01163 -24.97302 -23.47120 -22.58155 -21.94724 -20.51140 -19.96367 -19.55310 -17.82474 -16.92175 -16.88838 -16.77844 -16.25521 -16.05032 -15.82678 -15.58960 -15.47540 -15.02592 -14.86690 -14.46697 -14.01728 -13.92933 -13.72579 -13.41560 -13.29097 -13.10631 -12.92336 -12.78545 -12.73897 -12.58648 -12.36964 -12.10000 -11.88789 -11.57086 -11.29894 -11.16424 -10.84886 -10.79245 -10.58419 -10.38292 -9.85687 -9.68873 -9.66809 -9.51991 -9.22441 -8.74072 -8.65752 -8.18752 -7.06638 -6.08099 -3.51868 1.59812 2.00897 2.16251 3.14581 3.30338 3.31909 3.69406 3.85570 4.00415 4.23032 4.29122 4.34626 4.52902 4.63028 4.72608 4.94785 4.97611 5.15952 5.23426 5.29614 5.35361 5.42801 5.49805 5.56743 5.63688 5.75246 5.79409 5.88086 5.89667 6.05558 6.12480 6.16261 6.27260 6.32923 6.48421 6.72141 6.74032 7.15125 7.36846 7.58147 7.76686 8.20683 8.27797 8.75432 8.94294 9.53429 9.90938 11.05439 Molecular weight = 344.14amu Principal moments of inertia in cm(-1) A = 0.011924 B = 0.004447 C = 0.003604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2347.630955 B = 6294.692677 C = 7768.303174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.354 5.354 3 C 0.112 3.888 4 C -0.244 4.244 5 C 0.586 3.414 6 O -0.544 6.544 7 N -0.693 5.693 8 C 0.139 3.861 9 C 0.128 3.872 10 H 0.046 0.954 11 C 0.054 3.946 12 O -0.388 6.388 13 C 0.046 3.954 14 C 0.090 3.910 15 N -0.606 5.606 16 C -0.264 4.264 17 H 0.100 0.900 18 C 0.028 3.972 19 N -0.900 5.900 20 Si 0.877 3.123 21 H -0.287 1.287 22 H -0.305 1.305 23 H -0.271 1.271 24 C 0.045 3.955 25 C 0.368 3.632 26 F -0.179 7.179 27 F -0.184 7.184 28 N -0.272 5.272 29 H 0.083 0.917 30 H 0.093 0.907 31 H 0.094 0.906 32 H 0.190 0.810 33 H 0.406 0.594 34 H 0.062 0.938 35 H 0.072 0.928 36 H 0.089 0.911 37 H 0.053 0.947 38 H 0.084 0.916 39 H 0.052 0.948 40 H 0.033 0.967 41 H 0.081 0.919 42 H 0.263 0.737 43 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.514 -4.142 9.169 10.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.133 5.133 3 C -0.038 4.038 4 C -0.259 4.259 5 C 0.372 3.628 6 O -0.423 6.423 7 N -0.344 5.344 8 C 0.015 3.985 9 C 0.022 3.978 10 H 0.064 0.936 11 C -0.025 4.025 12 O -0.307 6.307 13 C -0.032 4.032 14 C -0.035 4.035 15 N -0.333 5.333 16 C -0.392 4.392 17 H 0.117 0.883 18 C -0.171 4.171 19 N -0.542 5.542 20 Si 0.707 3.293 21 H -0.214 1.214 22 H -0.233 1.233 23 H -0.196 1.196 24 C -0.123 4.123 25 C 0.312 3.688 26 F -0.160 7.160 27 F -0.165 7.165 28 N -0.095 5.095 29 H 0.102 0.898 30 H 0.112 0.888 31 H 0.113 0.887 32 H 0.207 0.793 33 H 0.243 0.757 34 H 0.081 0.919 35 H 0.090 0.910 36 H 0.107 0.893 37 H 0.072 0.928 38 H 0.102 0.898 39 H 0.070 0.930 40 H 0.051 0.949 41 H 0.099 0.901 42 H 0.073 0.927 43 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -3.740 -5.396 9.164 11.273 hybrid contribution -1.030 1.755 -0.364 2.067 sum -4.770 -3.641 8.799 10.651 Atomic orbital electron populations 1.22054 0.73106 1.04929 1.04356 1.48217 1.07111 1.03422 1.54564 1.23219 0.90115 0.93893 0.96556 1.20234 0.93537 0.92830 1.19271 1.17058 0.87234 0.81884 0.76646 1.90776 1.26328 1.73931 1.51282 1.45656 1.10472 1.04681 1.73620 1.21117 0.87572 0.88331 1.01466 1.21458 0.93181 0.92762 0.90431 0.93649 1.22912 0.95926 0.82433 1.01213 1.87829 1.79009 1.26523 1.37325 1.23063 0.95188 0.99210 0.85762 1.22063 0.95373 0.85555 1.00492 1.44452 1.64635 1.01345 1.22862 1.19085 1.04091 0.98305 1.17735 0.88309 1.25344 0.97351 0.97011 0.97435 1.69821 1.26525 1.40103 1.17723 0.87094 0.81215 0.81858 0.79126 1.21414 1.23289 1.19624 1.22795 0.93658 0.93988 1.01900 1.19068 0.80476 0.96700 0.72560 1.93077 1.76310 1.95990 1.50659 1.93038 1.77073 1.96102 1.50279 1.76932 1.00404 1.08236 1.23915 0.89830 0.88842 0.88739 0.79274 0.75739 0.91948 0.91010 0.89314 0.92836 0.89805 0.92977 0.94873 0.90077 0.92733 0.86261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.80 11.44 59.85 0.68 1.49 16 2 N -0.35 -4.81 3.98 -67.60 -0.27 -5.08 16 3 C 0.11 1.69 10.99 -16.56 -0.18 1.51 16 4 C -0.24 -4.41 6.13 -105.07 -0.64 -5.06 16 5 C 0.59 11.78 7.81 -12.52 -0.10 11.68 16 6 O -0.54 -12.30 14.14 5.27 0.07 -12.22 16 7 N -0.69 -13.02 3.79 -61.38 -0.23 -13.25 16 8 C 0.14 2.52 4.44 -4.04 -0.02 2.50 16 9 C 0.13 2.29 3.20 -67.42 -0.22 2.08 16 10 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 11 C 0.05 0.87 6.29 37.31 0.23 1.10 16 12 O -0.39 -6.81 10.74 -35.23 -0.38 -7.19 16 13 C 0.05 0.79 6.99 37.31 0.26 1.05 16 14 C 0.09 1.81 4.38 -3.52 -0.02 1.80 16 15 N -0.61 -12.80 2.78 -164.28 -0.46 -13.26 16 16 C -0.26 -6.45 7.59 -15.06 -0.11 -6.57 16 17 H 0.10 2.70 5.98 -52.48 -0.31 2.38 16 18 C 0.03 0.73 5.28 -17.43 -0.09 0.64 16 19 N -0.90 -25.24 13.97 55.49 0.78 -24.46 16 20 Si 0.88 19.87 24.28 -169.99 -4.13 15.74 16 21 H -0.29 -6.47 6.54 56.52 0.37 -6.11 16 22 H -0.30 -7.09 7.11 56.52 0.40 -6.69 16 23 H -0.27 -5.95 6.65 56.52 0.38 -5.57 16 24 C 0.04 0.77 6.70 -82.02 -0.55 0.22 16 25 C 0.37 5.80 5.11 36.01 0.18 5.99 16 26 F -0.18 -3.35 16.28 2.25 0.04 -3.31 16 27 F -0.18 -3.15 16.28 2.25 0.04 -3.12 16 28 N -0.27 -4.22 12.50 33.89 0.42 -3.80 16 29 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.19 2.45 7.46 -52.48 -0.39 2.06 16 33 H 0.41 7.46 6.31 -40.82 -0.26 7.21 16 34 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 35 H 0.07 1.46 7.52 -51.93 -0.39 1.07 16 36 H 0.09 1.19 8.14 -51.93 -0.42 0.76 16 37 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 39 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 40 H 0.03 0.67 6.82 -51.93 -0.35 0.32 16 41 H 0.08 1.76 4.89 -51.93 -0.25 1.50 16 42 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 43 H 0.12 1.34 8.14 -51.93 -0.42 0.92 16 LS Contribution 354.09 15.07 5.34 5.34 Total: -1.00 -33.54 354.09 -4.73 -38.26 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: -5.38 Total: 7.91 kcal Atomic # 6 Polarization: 19.00 SS G_CDS: -0.56 Total: 18.43 kcal Atomic # 7 Polarization: -60.09 SS G_CDS: 0.24 Total: -59.85 kcal Atomic # 8 Polarization: -19.10 SS G_CDS: -0.30 Total: -19.41 kcal Atomic # 9 Polarization: -6.50 SS G_CDS: 0.07 Total: -6.43 kcal Atomic # 14 Polarization: 19.87 SS G_CDS: -4.13 Total: 15.74 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -33.54 -4.73 -38.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050954821.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.818 kcal (2) G-P(sol) polarization free energy of solvation -33.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds