Wall clock time and date at job start Wed Apr 1 2020 03:07:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34256 * 125.75763 * 2 1 4 4 C 1.38046 * 107.42105 * 179.73618 * 3 2 1 5 5 C 1.47429 * 126.41373 * 180.25866 * 4 3 2 6 6 O 1.21608 * 119.99382 * 179.97438 * 5 4 3 7 7 N 1.34774 * 120.00368 * 359.97438 * 5 4 3 8 8 C 1.46496 * 119.99990 * 180.02562 * 7 5 4 9 9 C 1.53002 * 109.47018 * 179.97438 * 8 7 5 10 10 H 1.08999 * 109.67956 * 59.09601 * 9 8 7 11 11 C 1.53293 * 109.67786 * 179.61531 * 9 8 7 12 12 O 1.42966 * 109.21741 * 172.02543 * 11 9 8 13 13 C 1.42968 * 114.16890 * 297.41339 * 12 11 9 14 14 C 1.53302 * 109.21839 * 62.58558 * 13 12 11 15 15 N 1.47151 * 109.67889 * 298.57990 * 9 8 7 16 16 C 1.36934 * 120.98599 * 9.71254 * 15 9 8 17 17 H 1.08007 * 119.99585 * 329.55332 * 16 15 9 18 18 C 1.38809 * 120.00325 * 149.55618 * 16 15 9 19 19 N 1.31614 * 120.00332 * 163.24115 * 18 16 15 20 20 Si 1.86800 * 119.99749 * 343.23288 * 18 16 15 21 21 H 1.48500 * 109.46950 * 88.92581 * 20 18 16 22 22 H 1.48501 * 109.47119 * 208.92149 * 20 18 16 23 23 H 1.48494 * 109.47294 * 328.92759 * 20 18 16 24 24 C 1.41284 * 107.16672 * 0.26168 * 4 3 2 25 25 C 1.50702 * 125.98998 * 179.97438 * 24 4 3 26 26 F 1.39905 * 109.46846 * 300.00231 * 25 24 4 27 27 F 1.39900 * 109.46791 * 59.99571 * 25 24 4 28 28 N 1.30451 * 108.02955 * 359.97438 * 24 4 3 29 29 H 1.08994 * 109.47401 * 89.99995 * 1 2 3 30 30 H 1.08997 * 109.47247 * 210.00698 * 1 2 3 31 31 H 1.09001 * 109.46987 * 330.00258 * 1 2 3 32 32 H 1.08005 * 126.29169 * 359.97438 * 3 2 1 33 33 H 0.97003 * 119.99804 * 359.97438 * 7 5 4 34 34 H 1.09004 * 109.46577 * 299.99542 * 8 7 5 35 35 H 1.08999 * 109.47111 * 59.99581 * 8 7 5 36 36 H 1.08997 * 109.51388 * 291.94456 * 11 9 8 37 37 H 1.08993 * 109.51413 * 52.05265 * 11 9 8 38 38 H 1.08991 * 109.51329 * 182.50490 * 13 12 11 39 39 H 1.09003 * 109.51287 * 302.66454 * 13 12 11 40 40 H 1.08997 * 109.68259 * 67.41471 * 14 13 12 41 41 H 1.08996 * 109.67913 * 187.97725 * 14 13 12 42 42 H 0.96999 * 120.00459 * 179.97438 * 19 18 16 43 43 H 1.08997 * 109.47609 * 179.97438 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2495 1.0895 0.0000 4 6 3.5599 0.6552 0.0061 5 6 4.7638 1.5061 0.0136 6 8 5.8681 0.9968 0.0190 7 7 4.6406 2.8482 0.0146 8 6 5.8370 3.6936 0.0216 9 6 5.4210 5.1660 0.0206 10 1 4.8093 5.3752 0.8982 11 6 6.6696 6.0551 0.0376 12 8 6.2796 7.4176 -0.1507 13 6 5.6514 7.6783 -1.4082 14 6 4.3506 6.8721 -1.4992 15 7 4.6548 5.4636 -1.1999 16 6 4.2385 4.4600 -2.0333 17 1 4.8211 3.5548 -2.1214 18 6 3.0678 4.6059 -2.7648 19 7 2.8320 3.8192 -3.7932 20 14 1.8271 5.9189 -2.2894 21 1 2.1557 7.1870 -2.9888 22 1 0.4643 5.4769 -2.6803 23 1 1.8748 6.1367 -0.8213 24 6 3.5311 -0.7573 0.0036 25 6 4.7321 -1.6676 0.0078 26 9 5.5075 -1.4218 -1.1305 27 9 5.4967 -1.4255 1.1540 28 7 2.2826 -1.1357 -0.0029 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3633 -0.8899 0.5139 31 1 -0.3633 0.8900 0.5138 32 1 1.9167 2.1170 -0.0004 33 1 3.7597 3.2543 0.0100 34 1 6.4257 3.4826 0.9143 35 1 6.4347 3.4846 -0.8657 36 1 7.1777 5.9510 0.9962 37 1 7.3420 5.7539 -0.7656 38 1 5.4270 8.7417 -1.4896 39 1 6.3198 7.3834 -2.2172 40 1 3.6310 7.2535 -0.7749 41 1 3.9383 6.9530 -2.5049 42 1 2.0138 3.9209 -4.3041 43 1 4.4010 -2.7061 0.0049 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001050954821.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:07:57 Heat of formation + Delta-G solvation = -83.381007 kcal Electronic energy + Delta-G solvation = -31915.082773 eV Core-core repulsion = 27247.587838 eV Total energy + Delta-G solvation = -4667.494936 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.145 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -49.87251 -47.91791 -42.55629 -40.67665 -39.71284 -36.97691 -35.31647 -34.77512 -33.62557 -32.80434 -31.47147 -29.44390 -29.18696 -27.35175 -26.20156 -25.18675 -23.98123 -23.27493 -21.76225 -21.53709 -20.95680 -19.24610 -18.43357 -18.21806 -18.08767 -17.70322 -17.54650 -17.23434 -16.81484 -16.67263 -16.54848 -16.27566 -15.99559 -15.53688 -15.39615 -15.18394 -14.77061 -14.70647 -14.41189 -14.27171 -14.26327 -13.93061 -13.87992 -13.57519 -13.45496 -13.43441 -13.08374 -12.78672 -12.52645 -12.31584 -12.28112 -12.04511 -12.00083 -11.51049 -11.34425 -11.09964 -10.86452 -10.78928 -10.48294 -10.02734 -9.66211 -8.82219 -8.06083 -5.47248 0.40453 0.67032 1.14771 1.35294 1.44804 1.54022 2.28627 2.46283 2.52464 2.63193 2.90907 3.06203 3.13591 3.26695 3.37431 3.77180 3.87005 3.98140 4.03579 4.08956 4.21948 4.26220 4.30075 4.31724 4.37975 4.42828 4.50512 4.56098 4.65068 4.66018 4.73023 4.76576 4.92434 4.94637 4.97184 5.24992 5.62664 5.70052 5.90424 6.16175 6.21840 6.26000 6.75165 6.89411 7.41716 7.62547 8.03437 9.11193 Molecular weight = 344.14amu Principal moments of inertia in cm(-1) A = 0.011924 B = 0.004447 C = 0.003604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2347.630955 B = 6294.692677 C = 7768.303174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.343 5.343 3 C 0.122 3.878 4 C -0.285 4.285 5 C 0.580 3.420 6 O -0.579 6.579 7 N -0.690 5.690 8 C 0.144 3.856 9 C 0.131 3.869 10 H 0.062 0.938 11 C 0.056 3.944 12 O -0.389 6.389 13 C 0.052 3.948 14 C 0.085 3.915 15 N -0.618 5.618 16 C -0.236 4.236 17 H 0.062 0.938 18 C -0.021 4.021 19 N -0.951 5.951 20 Si 0.939 3.061 21 H -0.285 1.285 22 H -0.313 1.313 23 H -0.254 1.254 24 C 0.029 3.971 25 C 0.359 3.641 26 F -0.202 7.202 27 F -0.195 7.195 28 N -0.272 5.272 29 H 0.090 0.910 30 H 0.113 0.887 31 H 0.124 0.876 32 H 0.210 0.790 33 H 0.408 0.592 34 H 0.083 0.917 35 H 0.040 0.960 36 H 0.124 0.876 37 H 0.046 0.954 38 H 0.116 0.884 39 H 0.046 0.954 40 H 0.042 0.958 41 H 0.063 0.937 42 H 0.259 0.741 43 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.926 -2.716 11.026 12.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.122 5.122 3 C -0.030 4.030 4 C -0.300 4.300 5 C 0.368 3.632 6 O -0.461 6.461 7 N -0.340 5.340 8 C 0.020 3.980 9 C 0.025 3.975 10 H 0.079 0.921 11 C -0.022 4.022 12 O -0.307 6.307 13 C -0.026 4.026 14 C -0.040 4.040 15 N -0.345 5.345 16 C -0.365 4.365 17 H 0.080 0.920 18 C -0.217 4.217 19 N -0.597 5.597 20 Si 0.768 3.232 21 H -0.212 1.212 22 H -0.242 1.242 23 H -0.178 1.178 24 C -0.139 4.139 25 C 0.304 3.696 26 F -0.183 7.183 27 F -0.176 7.176 28 N -0.095 5.095 29 H 0.109 0.891 30 H 0.131 0.869 31 H 0.142 0.858 32 H 0.227 0.773 33 H 0.245 0.755 34 H 0.101 0.899 35 H 0.058 0.942 36 H 0.142 0.858 37 H 0.064 0.936 38 H 0.134 0.866 39 H 0.064 0.936 40 H 0.060 0.940 41 H 0.081 0.919 42 H 0.068 0.932 43 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -5.160 -3.940 11.063 12.828 hybrid contribution -0.592 1.296 -0.934 1.704 sum -5.752 -2.644 10.130 11.945 Atomic orbital electron populations 1.22570 0.69904 1.07496 1.05613 1.48691 1.08724 1.02414 1.52420 1.23444 0.89410 0.95049 0.95052 1.20281 0.94002 0.93420 1.22277 1.17432 0.87615 0.82290 0.75905 1.90737 1.27774 1.74516 1.53075 1.45623 1.10669 1.04525 1.73158 1.21095 0.87333 0.88687 1.00931 1.21611 0.93805 0.92693 0.89379 0.92073 1.23001 0.94834 0.81502 1.02898 1.87843 1.78794 1.26901 1.37203 1.23041 0.93402 1.00517 0.85681 1.22131 0.97144 0.85090 0.99612 1.44546 1.64863 1.01359 1.23724 1.18786 1.02983 0.97696 1.17053 0.92032 1.25825 0.99119 0.99309 0.97403 1.69975 1.27071 1.43052 1.19596 0.86081 0.78227 0.79307 0.79549 1.21226 1.24248 1.17806 1.22984 0.94504 0.93876 1.02534 1.19664 0.79714 0.98889 0.71331 1.93022 1.77018 1.96293 1.51955 1.93001 1.77454 1.96346 1.50824 1.76878 0.99926 1.09083 1.23620 0.89130 0.86852 0.85759 0.77349 0.75548 0.89850 0.94166 0.85832 0.93567 0.86648 0.93599 0.94032 0.91908 0.93230 0.81489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.13 11.44 127.77 1.46 2.60 16 2 N -0.34 -8.74 3.98 -367.79 -1.46 -10.21 16 3 C 0.12 3.59 10.99 84.28 0.93 4.51 16 4 C -0.28 -10.43 6.13 -20.15 -0.12 -10.55 16 5 C 0.58 24.04 7.81 86.66 0.68 24.71 16 6 O -0.58 -27.27 14.14 -4.06 -0.06 -27.33 16 7 N -0.69 -26.19 3.79 -466.37 -1.77 -27.95 16 8 C 0.14 5.19 4.44 86.38 0.38 5.57 16 9 C 0.13 4.44 3.20 44.97 0.14 4.59 16 10 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 11 C 0.06 1.67 6.29 72.08 0.45 2.12 16 12 O -0.39 -12.33 10.74 -148.98 -1.60 -13.93 16 13 C 0.05 1.63 6.99 72.08 0.50 2.14 16 14 C 0.08 3.22 4.38 86.35 0.38 3.60 16 15 N -0.62 -25.40 2.78 -673.68 -1.88 -27.27 16 16 C -0.24 -11.65 7.59 84.03 0.64 -11.01 16 17 H 0.06 3.51 5.98 -2.91 -0.02 3.49 16 18 C -0.02 -1.09 5.28 84.86 0.45 -0.64 16 19 N -0.95 -54.76 13.97 21.65 0.30 -54.46 16 20 Si 0.94 40.62 24.28 68.60 1.67 42.29 16 21 H -0.29 -12.16 6.54 99.48 0.65 -11.51 16 22 H -0.31 -13.94 7.11 99.48 0.71 -13.23 16 23 H -0.25 -10.14 6.65 99.48 0.66 -9.48 16 24 C 0.03 0.98 6.70 43.51 0.29 1.28 16 25 C 0.36 11.43 5.11 71.24 0.36 11.80 16 26 F -0.20 -7.82 16.28 44.97 0.73 -7.08 16 27 F -0.20 -6.83 16.28 44.97 0.73 -6.10 16 28 N -0.27 -8.14 12.50 -46.68 -0.58 -8.72 16 29 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.12 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.21 5.10 7.46 -2.91 -0.02 5.07 16 33 H 0.41 14.90 6.31 -92.71 -0.59 14.31 16 34 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 35 H 0.04 1.70 7.52 -2.39 -0.02 1.69 16 36 H 0.12 2.84 8.14 -2.39 -0.02 2.82 16 37 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 38 H 0.12 2.95 8.14 -2.39 -0.02 2.93 16 39 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 40 H 0.04 1.53 6.82 -2.39 -0.02 1.51 16 41 H 0.06 2.62 4.89 -2.39 -0.01 2.61 16 42 H 0.26 14.32 8.31 -92.71 -0.77 13.55 16 43 H 0.17 3.58 8.14 -2.39 -0.02 3.56 16 Total: -1.00 -74.96 354.09 3.02 -71.95 By element: Atomic # 1 Polarization: 27.74 SS G_CDS: 0.38 Total: 28.12 kcal Atomic # 6 Polarization: 34.16 SS G_CDS: 6.55 Total: 40.70 kcal Atomic # 7 Polarization: -123.23 SS G_CDS: -5.39 Total: -128.61 kcal Atomic # 8 Polarization: -39.61 SS G_CDS: -1.66 Total: -41.26 kcal Atomic # 9 Polarization: -14.64 SS G_CDS: 1.46 Total: -13.18 kcal Atomic # 14 Polarization: 40.62 SS G_CDS: 1.67 Total: 42.29 kcal Total: -74.96 3.02 -71.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050954821.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.433 kcal (2) G-P(sol) polarization free energy of solvation -74.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds