Wall clock time and date at job start Wed Apr 1 2020 03:51:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35969 * 116.99773 * 2 1 4 4 C 1.38263 * 120.11982 * 359.97438 * 3 2 1 5 5 C 1.38768 * 120.67587 * 180.02562 * 4 3 2 6 6 C 1.36624 * 120.49764 * 359.97438 * 5 4 3 7 7 C 1.39785 * 119.81253 * 0.02562 * 6 5 4 8 8 C 1.46250 * 134.15053 * 179.67907 * 7 6 5 9 9 C 1.35813 * 106.08622 * 179.97438 * 8 7 6 10 10 C 1.46996 * 125.13700 * 180.10040 * 9 8 7 11 11 O 1.21654 * 120.00212 * 0.27895 * 10 9 8 12 12 N 1.34775 * 119.99334 * 180.27656 * 10 9 8 13 13 C 1.46508 * 119.99521 * 180.02562 * 12 10 9 14 14 C 1.52996 * 109.46924 * 180.02562 * 13 12 10 15 15 H 1.08993 * 112.85331 * 316.19527 * 14 13 12 16 16 C 1.53782 * 113.61601 * 87.50340 * 14 13 12 17 17 C 1.53784 * 87.08320 * 139.97890 * 16 14 13 18 18 H 1.08993 * 113.61112 * 89.11791 * 17 16 14 19 19 N 1.46505 * 113.61445 * 220.02075 * 17 16 14 20 20 C 1.36927 * 119.99812 * 252.49646 * 19 17 16 21 21 H 1.08004 * 120.00479 * 0.02562 * 20 19 17 22 22 C 1.38813 * 120.00171 * 179.97438 * 20 19 17 23 23 N 1.31625 * 119.99888 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 120.00395 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.46903 * 90.00304 * 24 22 20 26 26 H 1.48498 * 109.47410 * 210.00372 * 24 22 20 27 27 H 1.48503 * 109.47125 * 330.00769 * 24 22 20 28 28 C 1.53783 * 113.61250 * 184.99999 * 14 13 12 29 29 O 1.34931 * 109.71828 * 0.36450 * 9 8 7 30 30 C 1.34766 * 110.84376 * 359.76068 * 29 9 8 31 31 H 1.09001 * 109.46776 * 60.00463 * 1 2 3 32 32 H 1.09001 * 109.46936 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.46931 * 300.00086 * 1 2 3 34 34 H 1.08001 * 119.66151 * 359.97438 * 4 3 2 35 35 H 1.08000 * 119.75258 * 180.02562 * 5 4 3 36 36 H 1.08005 * 120.09670 * 180.02562 * 6 5 4 37 37 H 1.07997 * 126.95437 * 0.02562 * 8 7 6 38 38 H 0.96991 * 120.00922 * 0.02562 * 12 10 9 39 39 H 1.09003 * 109.47006 * 300.00389 * 13 12 10 40 40 H 1.09002 * 109.47135 * 60.00244 * 13 12 10 41 41 H 1.08993 * 113.61595 * 254.53031 * 16 14 13 42 42 H 1.09002 * 113.61187 * 25.42989 * 16 14 13 43 43 H 0.96996 * 119.99776 * 72.49331 * 19 17 16 44 44 H 0.96994 * 120.00163 * 179.97438 * 23 22 20 45 45 H 1.08996 * 113.61621 * 334.56696 * 28 14 13 46 46 H 1.08995 * 113.61512 * 105.38606 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 1.2956 2.3726 -0.0005 5 6 1.9135 3.6151 -0.0011 6 6 3.2763 3.7118 -0.0006 7 6 4.0554 2.5511 0.0000 8 6 5.4944 2.2901 -0.0053 9 6 5.6317 0.9389 -0.0008 10 6 6.9132 0.2188 -0.0015 11 8 7.9596 0.8393 -0.0014 12 7 6.9287 -1.1289 -0.0024 13 6 8.2060 -1.8466 -0.0026 14 6 7.9438 -3.3540 -0.0042 15 1 7.1569 -3.6475 0.6904 16 6 7.7784 -3.9490 -1.4126 17 6 8.5944 -5.1534 -0.9141 18 1 7.9846 -5.9397 -0.4693 19 7 9.5512 -5.6625 -1.8999 20 6 9.3136 -6.8530 -2.5332 21 1 8.4206 -7.4165 -2.3065 22 6 10.2198 -7.3351 -3.4676 23 7 11.3079 -6.6481 -3.7444 24 14 9.8961 -8.9596 -4.3312 25 1 9.1235 -8.7134 -5.5753 26 1 11.1891 -9.6059 -4.6711 27 1 9.1180 -9.8508 -3.4336 28 6 9.2212 -4.2015 0.1183 29 8 4.4141 0.3575 -0.0014 30 6 3.4387 1.2875 -0.0010 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 0.2173 2.3119 -0.0014 35 1 1.3126 4.5125 -0.0011 36 1 3.7505 4.6822 -0.0006 37 1 6.2872 3.0233 -0.0107 38 1 6.0945 -1.6236 -0.0029 39 1 8.7747 -1.5760 -0.8922 40 1 8.7742 -1.5773 0.8877 41 1 6.7468 -4.1945 -1.6644 42 1 8.2799 -3.3740 -2.1911 43 1 10.3530 -5.1561 -2.1038 44 1 11.9414 -6.9852 -4.3970 45 1 10.1170 -3.6956 -0.2417 46 1 9.3550 -4.6497 1.1027 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086181523.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:51:21 Heat of formation + Delta-G solvation = -7.973621 kcal Electronic energy + Delta-G solvation = -28332.020634 eV Core-core repulsion = 24189.732387 eV Total energy + Delta-G solvation = -4142.288247 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.89043 -40.12887 -39.59699 -38.43761 -37.37849 -34.87202 -33.31799 -32.79617 -30.95839 -30.32166 -29.75709 -28.01181 -27.32486 -25.09072 -24.42489 -23.54483 -23.18197 -21.81646 -21.08651 -20.81660 -19.24636 -18.66004 -18.13556 -17.69979 -17.03020 -16.94053 -16.22380 -16.05165 -15.98652 -15.48164 -15.27731 -15.02621 -14.62223 -14.47548 -13.90839 -13.75629 -13.55127 -13.37996 -13.34214 -12.95222 -12.78335 -12.76174 -11.97409 -11.91532 -11.82389 -11.81099 -11.75470 -11.41943 -11.24982 -10.84324 -10.68452 -10.45092 -10.24034 -10.17024 -10.04455 -9.83628 -9.51820 -9.24536 -8.99892 -8.86334 -8.31484 -6.95803 -5.77672 -3.06486 0.18687 0.87927 1.47317 2.06145 2.69349 2.90756 2.94609 3.20992 3.43335 3.48388 3.50161 4.06230 4.28595 4.30479 4.52361 4.58753 4.67836 4.68364 4.78854 4.81319 4.89283 4.94733 4.99248 5.04218 5.18327 5.22015 5.46671 5.49723 5.60045 5.61193 5.77876 5.80203 5.83436 5.91881 5.96789 6.05721 6.09074 6.14629 6.28943 6.34151 6.36924 6.41797 6.60448 6.82201 6.87633 7.11354 7.28008 7.69753 7.85925 8.40884 9.51924 10.10176 10.44436 11.44677 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.015239 B = 0.001868 C = 0.001730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1837.009990 B =14989.566414 C =16176.575664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.311 6.311 3 C 0.144 3.856 4 C -0.186 4.186 5 C -0.097 4.097 6 C -0.100 4.100 7 C -0.103 4.103 8 C -0.122 4.122 9 C -0.012 4.012 10 C 0.595 3.405 11 O -0.515 6.515 12 N -0.708 5.708 13 C 0.130 3.870 14 C -0.129 4.129 15 H 0.090 0.910 16 C -0.162 4.162 17 C 0.166 3.834 18 H 0.076 0.924 19 N -0.712 5.712 20 C -0.244 4.244 21 H 0.071 0.929 22 C -0.014 4.014 23 N -0.932 5.932 24 Si 0.908 3.092 25 H -0.290 1.290 26 H -0.291 1.291 27 H -0.282 1.282 28 C -0.141 4.141 29 O -0.173 6.173 30 C 0.043 3.957 31 H 0.058 0.942 32 H 0.104 0.896 33 H 0.058 0.942 34 H 0.142 0.858 35 H 0.134 0.866 36 H 0.134 0.866 37 H 0.174 0.826 38 H 0.408 0.592 39 H 0.076 0.924 40 H 0.071 0.929 41 H 0.054 0.946 42 H 0.079 0.921 43 H 0.385 0.615 44 H 0.256 0.744 45 H 0.081 0.919 46 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.975 21.923 11.276 33.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.224 6.224 3 C 0.098 3.902 4 C -0.205 4.205 5 C -0.115 4.115 6 C -0.118 4.118 7 C -0.104 4.104 8 C -0.143 4.143 9 C -0.062 4.062 10 C 0.379 3.621 11 O -0.393 6.393 12 N -0.358 5.358 13 C 0.007 3.993 14 C -0.148 4.148 15 H 0.108 0.892 16 C -0.203 4.203 17 C 0.054 3.946 18 H 0.094 0.906 19 N -0.350 5.350 20 C -0.375 4.375 21 H 0.089 0.911 22 C -0.210 4.210 23 N -0.580 5.580 24 Si 0.739 3.261 25 H -0.217 1.217 26 H -0.218 1.218 27 H -0.207 1.207 28 C -0.181 4.181 29 O -0.074 6.074 30 C -0.005 4.005 31 H 0.077 0.923 32 H 0.122 0.878 33 H 0.076 0.924 34 H 0.159 0.841 35 H 0.152 0.848 36 H 0.152 0.848 37 H 0.191 0.809 38 H 0.243 0.757 39 H 0.094 0.906 40 H 0.089 0.911 41 H 0.073 0.927 42 H 0.097 0.903 43 H 0.219 0.781 44 H 0.065 0.935 45 H 0.100 0.900 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -22.184 21.615 11.189 32.932 hybrid contribution -0.616 -0.660 -0.643 1.109 sum -22.800 20.955 10.546 32.714 Atomic orbital electron populations 1.23141 0.77694 1.04553 1.01488 1.86190 1.21859 1.25833 1.88557 1.17746 0.86580 0.85808 1.00071 1.21012 1.00086 0.91030 1.08340 1.20552 0.94235 0.97109 0.99597 1.20276 0.93092 0.96895 1.01537 1.19734 0.92769 0.93013 1.04926 1.22722 0.94553 0.94536 1.02495 1.22180 0.83962 0.92705 1.07395 1.16661 0.85236 0.82444 0.77737 1.90902 1.30234 1.67560 1.50586 1.46012 1.11313 1.05435 1.72995 1.21600 0.83992 0.91034 1.02659 1.22660 1.00245 0.91759 1.00126 0.89195 1.23969 1.01046 1.00767 0.94524 1.21515 0.91484 0.91964 0.89652 0.90628 1.42407 1.23749 1.23763 1.45110 1.19302 1.04564 0.97184 1.16443 0.91096 1.24778 0.97031 0.99017 1.00176 1.69661 1.12021 1.39193 1.37128 0.86183 0.76876 0.83432 0.79651 1.21717 1.21768 1.20747 1.23448 0.96307 0.97881 1.00459 1.84080 1.12734 1.34802 1.75795 1.18817 0.87499 0.87153 1.07039 0.92318 0.87766 0.92353 0.84080 0.84766 0.84836 0.80869 0.75692 0.90595 0.91121 0.92677 0.90270 0.78051 0.93457 0.90025 0.91907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.13 9.81 101.05 0.99 1.12 16 2 O -0.31 -3.00 10.50 -19.64 -0.21 -3.21 16 3 C 0.14 1.41 6.70 -39.12 -0.26 1.15 16 4 C -0.19 -1.29 9.03 -39.38 -0.36 -1.65 16 5 C -0.10 -0.61 9.97 -39.97 -0.40 -1.01 16 6 C -0.10 -0.76 10.06 -39.59 -0.40 -1.16 16 7 C -0.10 -1.07 6.38 -105.21 -0.67 -1.74 16 8 C -0.12 -1.33 10.81 -37.23 -0.40 -1.73 16 9 C -0.01 -0.15 7.07 -36.90 -0.26 -0.41 16 10 C 0.59 8.09 7.80 -12.71 -0.10 7.99 16 11 O -0.52 -8.36 16.83 5.23 0.09 -8.27 16 12 N -0.71 -8.70 5.55 -61.51 -0.34 -9.04 16 13 C 0.13 1.70 5.51 -4.04 -0.02 1.67 16 14 C -0.13 -1.73 3.75 -89.81 -0.34 -2.06 16 15 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 16 C -0.16 -2.70 7.43 -25.92 -0.19 -2.90 16 17 C 0.17 3.21 4.48 -67.11 -0.30 2.91 16 18 H 0.08 1.45 8.10 -51.93 -0.42 1.03 16 19 N -0.71 -17.80 5.40 -52.63 -0.28 -18.09 16 20 C -0.24 -6.77 9.97 -15.06 -0.15 -6.92 16 21 H 0.07 1.90 7.83 -52.48 -0.41 1.49 16 22 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 23 N -0.93 -28.26 13.06 55.49 0.72 -27.53 16 24 Si 0.91 22.43 29.55 -169.99 -5.02 17.40 16 25 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 26 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 27 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 28 C -0.14 -2.23 7.39 -25.91 -0.19 -2.42 16 29 O -0.17 -2.17 10.28 2.68 0.03 -2.15 16 30 C 0.04 0.50 7.35 -38.24 -0.28 0.22 16 31 H 0.06 0.21 7.66 -51.93 -0.40 -0.19 16 32 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.06 0.20 7.66 -51.93 -0.40 -0.20 16 34 H 0.14 0.58 6.26 -52.49 -0.33 0.25 16 35 H 0.13 0.45 8.06 -52.49 -0.42 0.03 16 36 H 0.13 0.71 8.06 -52.48 -0.42 0.28 16 37 H 0.17 1.59 8.06 -52.49 -0.42 1.16 16 38 H 0.41 4.41 8.19 -40.82 -0.33 4.07 16 39 H 0.08 1.10 7.84 -51.93 -0.41 0.70 16 40 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 41 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.08 1.45 7.90 -51.93 -0.41 1.04 16 43 H 0.39 10.24 7.92 -40.82 -0.32 9.92 16 44 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 45 H 0.08 1.34 8.08 -51.93 -0.42 0.92 16 46 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 392.13 15.07 5.91 5.91 Total: -1.00 -33.76 392.13 -8.90 -42.66 By element: Atomic # 1 Polarization: 16.11 SS G_CDS: -6.37 Total: 9.74 kcal Atomic # 6 Polarization: -3.99 SS G_CDS: -3.43 Total: -7.42 kcal Atomic # 7 Polarization: -54.77 SS G_CDS: 0.10 Total: -54.67 kcal Atomic # 8 Polarization: -13.54 SS G_CDS: -0.09 Total: -13.63 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.02 Total: 17.40 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -33.76 -8.90 -42.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086181523.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.686 kcal (2) G-P(sol) polarization free energy of solvation -33.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds