Wall clock time and date at job start Wed Apr 1 2020 03:51:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35950 * 116.99631 * 2 1 4 4 C 1.38332 * 120.06216 * 359.97438 * 3 2 1 5 5 C 1.38614 * 120.58849 * 179.69837 * 4 3 2 6 6 C 1.37863 * 120.24933 * 0.30156 * 5 4 3 7 7 C 1.39189 * 119.73162 * 359.97438 * 6 5 4 8 8 C 1.47664 * 134.22326 * 180.02562 * 7 6 5 9 9 C 1.47072 * 127.13855 * 359.96850 * 8 7 6 10 10 O 1.21649 * 120.00093 * 0.02562 * 9 8 7 11 11 N 1.34775 * 120.00302 * 179.97438 * 9 8 7 12 12 C 1.46502 * 120.00200 * 180.02562 * 11 9 8 13 13 C 1.53002 * 109.47049 * 180.02562 * 12 11 9 14 14 H 1.09007 * 112.84269 * 43.80962 * 13 12 11 15 15 C 1.53782 * 113.61194 * 175.00150 * 13 12 11 16 16 C 1.53784 * 87.07741 * 139.98420 * 15 13 12 17 17 H 1.09002 * 113.61315 * 219.93451 * 16 15 13 18 18 N 1.46503 * 113.61231 * 89.11491 * 16 15 13 19 19 C 1.36942 * 119.99734 * 154.99491 * 18 16 15 20 20 H 1.08004 * 119.99741 * 0.02562 * 19 18 16 21 21 C 1.38806 * 119.99899 * 179.97438 * 19 18 16 22 22 N 1.31622 * 120.00228 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 120.00034 * 180.02562 * 21 19 18 24 24 H 1.48507 * 109.46807 * 0.02562 * 23 21 19 25 25 H 1.48505 * 109.46907 * 120.00100 * 23 21 19 26 26 H 1.48490 * 109.47399 * 240.00483 * 23 21 19 27 27 C 1.53776 * 113.61750 * 272.50134 * 13 12 11 28 28 C 1.36067 * 105.72549 * 179.97438 * 8 7 6 29 29 O 1.33774 * 109.83005 * 359.97438 * 28 8 7 30 30 C 1.34954 * 111.33747 * 0.02562 * 29 28 8 31 31 H 1.08996 * 109.47109 * 60.00364 * 1 2 3 32 32 H 1.09005 * 109.46560 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.47594 * 299.99504 * 1 2 3 34 34 H 1.08002 * 119.70859 * 359.97438 * 4 3 2 35 35 H 1.07999 * 119.87473 * 180.27500 * 5 4 3 36 36 H 1.08000 * 120.13321 * 179.97438 * 6 5 4 37 37 H 0.97000 * 119.99439 * 0.02562 * 11 9 8 38 38 H 1.09000 * 109.47204 * 300.00542 * 12 11 9 39 39 H 1.08998 * 109.46476 * 60.00800 * 12 11 9 40 40 H 1.08998 * 113.61383 * 254.52968 * 15 13 12 41 41 H 1.08996 * 113.61326 * 25.43653 * 15 13 12 42 42 H 0.96999 * 120.00440 * 335.00247 * 18 16 15 43 43 H 0.97001 * 120.00102 * 179.97438 * 22 21 19 44 44 H 1.09001 * 113.61350 * 334.56615 * 27 13 12 45 45 H 1.09004 * 113.61576 * 105.46858 * 27 13 12 46 46 H 1.07997 * 125.08524 * 180.02562 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2939 2.3723 -0.0005 5 6 1.9118 3.6131 0.0057 6 6 3.2874 3.7040 0.0063 7 6 4.0559 2.5435 0.0012 8 6 5.5068 2.2690 0.0006 9 6 6.5971 3.2560 0.0052 10 8 6.3411 4.4452 0.0107 11 7 7.8800 2.8429 0.0045 12 6 8.9662 3.8261 0.0097 13 6 10.3123 3.0989 0.0070 14 1 10.3405 2.2632 -0.6923 15 6 11.5215 4.0417 -0.1107 16 6 12.2254 3.1393 0.9166 17 1 12.8120 3.6900 1.6520 18 7 12.9672 2.0299 0.3122 19 6 14.0220 1.4673 0.9801 20 1 14.3068 1.8412 1.9526 21 6 14.7246 0.4158 0.4078 22 7 14.3772 -0.0402 -0.7771 23 14 16.1630 -0.3522 1.3192 24 1 16.3480 0.3363 2.6219 25 1 15.8873 -1.7921 1.5555 26 1 17.3968 -0.2115 0.5050 27 6 10.8244 2.7453 1.4133 28 6 5.6257 0.9136 -0.0053 29 8 4.4117 0.3515 -0.0077 30 6 3.4380 1.2859 -0.0042 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3634 0.5137 0.8900 34 1 0.2156 2.3114 -0.0014 35 1 1.3132 4.5121 0.0097 36 1 3.7668 4.6717 0.0108 37 1 8.0842 1.8946 0.0005 38 1 8.8914 4.4548 -0.8776 39 1 8.8900 4.4468 0.9024 40 1 11.9897 4.0305 -1.0949 41 1 11.3263 5.0498 0.2549 42 1 12.7113 1.6939 -0.5610 43 1 14.8684 -0.7747 -1.1772 44 1 10.4386 3.3991 2.1955 45 1 10.7297 1.6877 1.6593 46 1 6.5603 0.3724 -0.0069 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086367653.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:51:26 Heat of formation + Delta-G solvation = -8.284790 kcal Electronic energy + Delta-G solvation = -28440.809417 eV Core-core repulsion = 24298.507677 eV Total energy + Delta-G solvation = -4142.301741 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.92435 -39.93728 -39.60489 -38.44231 -37.25416 -34.69747 -33.34165 -32.77389 -30.72560 -30.28845 -29.54001 -27.74905 -27.30887 -25.08801 -24.20945 -23.61250 -22.97143 -22.56136 -21.61456 -20.35792 -18.90067 -18.29211 -18.03187 -17.30315 -17.08656 -16.84907 -16.09621 -15.97241 -15.86799 -15.51099 -15.26124 -15.22373 -14.86711 -14.18628 -14.10027 -13.79626 -13.57281 -13.27319 -13.23723 -12.92833 -12.75566 -12.63315 -12.30761 -11.94777 -11.80656 -11.71139 -11.63450 -11.42400 -11.06775 -10.88322 -10.51946 -10.27198 -10.14746 -10.12762 -9.86984 -9.72341 -9.50731 -9.07962 -8.99316 -8.91565 -8.20903 -7.03009 -5.83831 -3.12862 0.46411 0.90942 1.47359 2.25969 2.70808 3.06719 3.11902 3.39580 3.44217 3.45794 3.47751 4.03312 4.25986 4.40470 4.53259 4.59228 4.69797 4.75907 4.81803 4.91845 4.95112 5.02386 5.04575 5.06754 5.16130 5.23291 5.42630 5.58327 5.59659 5.68628 5.73576 5.84436 5.92668 5.98381 6.07761 6.13398 6.19143 6.22627 6.34696 6.36380 6.41554 6.56206 6.71390 6.86895 6.95410 7.01200 7.44120 7.67003 8.14006 8.35405 9.46272 10.03605 10.37750 11.38598 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.018607 B = 0.001841 C = 0.001705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1504.435888 B =15206.766157 C =16421.847085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.313 6.313 3 C 0.146 3.854 4 C -0.192 4.192 5 C -0.092 4.092 6 C -0.098 4.098 7 C -0.051 4.051 8 C -0.233 4.233 9 C 0.587 3.413 10 O -0.538 6.538 11 N -0.720 5.720 12 C 0.133 3.867 13 C -0.120 4.120 14 H 0.093 0.907 15 C -0.148 4.148 16 C 0.167 3.833 17 H 0.063 0.937 18 N -0.706 5.706 19 C -0.242 4.242 20 H 0.073 0.927 21 C -0.013 4.013 22 N -0.932 5.932 23 Si 0.908 3.092 24 H -0.280 1.280 25 H -0.291 1.291 26 H -0.291 1.291 27 C -0.168 4.168 28 C 0.078 3.922 29 O -0.171 6.171 30 C 0.018 3.982 31 H 0.058 0.942 32 H 0.102 0.898 33 H 0.058 0.942 34 H 0.141 0.859 35 H 0.135 0.865 36 H 0.141 0.859 37 H 0.399 0.601 38 H 0.066 0.934 39 H 0.068 0.932 40 H 0.068 0.932 41 H 0.077 0.923 42 H 0.385 0.615 43 H 0.255 0.745 44 H 0.068 0.932 45 H 0.066 0.934 46 H 0.221 0.779 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.991 3.944 0.800 29.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.227 6.227 3 C 0.100 3.900 4 C -0.210 4.210 5 C -0.110 4.110 6 C -0.117 4.117 7 C -0.053 4.053 8 C -0.238 4.238 9 C 0.374 3.626 10 O -0.416 6.416 11 N -0.370 5.370 12 C 0.010 3.990 13 C -0.139 4.139 14 H 0.112 0.888 15 C -0.187 4.187 16 C 0.054 3.946 17 H 0.081 0.919 18 N -0.344 5.344 19 C -0.373 4.373 20 H 0.091 0.909 21 C -0.209 4.209 22 N -0.580 5.580 23 Si 0.739 3.261 24 H -0.205 1.205 25 H -0.219 1.219 26 H -0.218 1.218 27 C -0.209 4.209 28 C 0.008 3.992 29 O -0.070 6.070 30 C -0.029 4.029 31 H 0.076 0.924 32 H 0.121 0.879 33 H 0.076 0.924 34 H 0.158 0.842 35 H 0.153 0.847 36 H 0.159 0.841 37 H 0.234 0.766 38 H 0.084 0.916 39 H 0.087 0.913 40 H 0.087 0.913 41 H 0.096 0.904 42 H 0.219 0.781 43 H 0.065 0.935 44 H 0.087 0.913 45 H 0.085 0.915 46 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -28.978 4.266 0.915 29.305 hybrid contribution 0.613 -0.964 0.108 1.147 sum -28.365 3.302 1.022 28.575 Atomic orbital electron populations 1.23117 0.77849 1.04329 1.01544 1.86157 1.21747 1.26036 1.88753 1.17671 0.86521 0.85625 1.00149 1.20970 0.99952 0.91067 1.09046 1.20883 0.94074 0.97081 0.98954 1.20633 0.92765 0.97846 1.00427 1.19196 0.91031 0.92865 1.02177 1.20993 0.93080 0.93491 1.16197 1.17031 0.81691 0.87382 0.76510 1.90774 1.83856 1.16722 1.50294 1.45901 1.05250 1.10843 1.75047 1.21519 0.84689 0.90827 1.01983 1.22725 0.91831 0.99484 0.99856 0.88846 1.23444 0.95967 0.97823 1.01492 1.21062 0.90293 0.89436 0.93771 0.91934 1.42178 1.34766 1.36403 1.21084 1.19342 1.05790 1.11623 1.00533 0.90922 1.24764 0.99924 0.99252 0.96967 1.69669 1.42739 1.29404 1.16233 0.86101 0.82264 0.78941 0.78781 1.20489 1.21851 1.21825 1.23893 1.01100 1.01482 0.94475 1.24645 0.87422 0.92268 0.94835 1.83909 1.13397 1.35247 1.74446 1.18609 0.87583 0.86680 1.10028 0.92366 0.87939 0.92358 0.84154 0.84699 0.84129 0.76633 0.91590 0.91335 0.91287 0.90412 0.78123 0.93487 0.91345 0.91498 0.76276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.13 9.81 101.05 0.99 1.12 16 2 O -0.31 -3.06 10.50 -19.58 -0.21 -3.26 16 3 C 0.15 1.53 6.70 -39.12 -0.26 1.27 16 4 C -0.19 -1.57 9.02 -39.41 -0.36 -1.92 16 5 C -0.09 -0.78 10.03 -39.58 -0.40 -1.18 16 6 C -0.10 -1.11 9.88 -39.37 -0.39 -1.49 16 7 C -0.05 -0.64 6.29 -104.99 -0.66 -1.30 16 8 C -0.23 -2.82 6.31 -103.25 -0.65 -3.47 16 9 C 0.59 8.00 7.80 -12.68 -0.10 7.90 16 10 O -0.54 -9.04 16.28 5.23 0.09 -8.95 16 11 N -0.72 -8.51 5.55 -61.49 -0.34 -8.85 16 12 C 0.13 1.71 5.51 -4.04 -0.02 1.69 16 13 C -0.12 -1.70 3.63 -89.81 -0.33 -2.03 16 14 H 0.09 1.41 8.14 -51.93 -0.42 0.98 16 15 C -0.15 -2.28 7.39 -25.92 -0.19 -2.47 16 16 C 0.17 3.15 4.56 -67.12 -0.31 2.84 16 17 H 0.06 1.20 8.10 -51.93 -0.42 0.78 16 18 N -0.71 -16.95 5.31 -52.63 -0.28 -17.23 16 19 C -0.24 -6.53 9.97 -15.06 -0.15 -6.68 16 20 H 0.07 1.91 7.83 -52.48 -0.41 1.50 16 21 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 22 N -0.93 -27.41 13.06 55.49 0.72 -26.68 16 23 Si 0.91 21.93 29.55 -169.99 -5.02 16.91 16 24 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 25 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 26 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 27 C -0.17 -2.68 7.43 -25.92 -0.19 -2.87 16 28 C 0.08 0.74 11.52 29.95 0.35 1.09 16 29 O -0.17 -1.99 10.53 5.29 0.06 -1.93 16 30 C 0.02 0.21 7.33 -38.45 -0.28 -0.07 16 31 H 0.06 0.21 7.66 -51.93 -0.40 -0.19 16 32 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.06 0.21 7.66 -51.93 -0.40 -0.18 16 34 H 0.14 0.71 6.26 -52.49 -0.33 0.38 16 35 H 0.14 0.76 8.06 -52.49 -0.42 0.34 16 36 H 0.14 1.63 7.53 -52.49 -0.40 1.24 16 37 H 0.40 3.80 7.40 -40.82 -0.30 3.50 16 38 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 39 H 0.07 0.92 7.84 -51.93 -0.41 0.51 16 40 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 41 H 0.08 1.05 8.10 -51.93 -0.42 0.62 16 42 H 0.38 9.76 7.90 -40.82 -0.32 9.44 16 43 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 44 H 0.07 0.98 7.90 -51.93 -0.41 0.57 16 45 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 46 H 0.22 1.17 7.41 -52.49 -0.39 0.78 16 LS Contribution 389.43 15.07 5.87 5.87 Total: -1.00 -34.24 389.43 -8.43 -42.67 By element: Atomic # 1 Polarization: 15.78 SS G_CDS: -6.27 Total: 9.50 kcal Atomic # 6 Polarization: -5.00 SS G_CDS: -3.04 Total: -8.04 kcal Atomic # 7 Polarization: -52.86 SS G_CDS: 0.10 Total: -52.76 kcal Atomic # 8 Polarization: -14.09 SS G_CDS: -0.06 Total: -14.15 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -34.24 -8.43 -42.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086367653.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.383 kcal (2) G-P(sol) polarization free energy of solvation -34.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds