Wall clock time and date at job start Wed Apr 1 2020 03:01:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46255 * 118.81316 * 2 1 4 4 C 1.52021 * 110.00093 * 162.98254 * 3 2 1 5 5 C 1.54318 * 110.65120 * 170.04683 * 4 3 2 6 6 C 1.54473 * 103.03772 * 152.88485 * 5 4 3 7 7 N 1.47094 * 107.29175 * 338.45622 * 6 5 4 8 8 C 1.34771 * 125.62425 * 179.01584 * 7 6 5 9 9 O 1.21609 * 119.99917 * 175.55401 * 8 7 6 10 10 C 1.47434 * 120.00305 * 355.55502 * 8 7 6 11 11 C 1.39236 * 120.28094 * 309.18326 * 10 8 7 12 12 C 1.38218 * 120.09229 * 179.97438 * 11 10 8 13 13 C 1.38829 * 120.67699 * 0.02562 * 12 11 10 14 14 C 1.37603 * 120.56961 * 359.97438 * 13 12 11 15 15 C 1.40704 * 119.88041 * 359.73955 * 14 13 12 16 16 C 1.40888 * 120.32781 * 180.25640 * 15 14 13 17 17 H 1.08005 * 120.00367 * 148.12837 * 16 15 14 18 18 C 1.40277 * 120.00134 * 328.13156 * 16 15 14 19 19 N 1.30619 * 120.00185 * 166.38027 * 18 16 15 20 20 Si 1.86805 * 119.99492 * 346.37967 * 18 16 15 21 21 H 1.48490 * 109.47022 * 92.16628 * 20 18 16 22 22 H 1.48507 * 109.46834 * 212.16534 * 20 18 16 23 23 H 1.48496 * 109.47147 * 332.16174 * 20 18 16 24 24 C 1.47579 * 108.74441 * 359.01456 * 7 6 5 25 25 O 1.42092 * 110.99894 * 46.73177 * 4 3 2 26 26 C 1.43080 * 113.32779 * 294.33655 * 25 4 3 27 27 C 1.33843 * 118.80705 * 179.97438 * 2 1 3 28 28 O 1.21286 * 118.62584 * 2.75587 * 27 2 1 29 29 H 1.09000 * 109.47389 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47220 * 300.00315 * 1 2 3 31 31 H 1.08995 * 109.46958 * 60.00314 * 1 2 3 32 32 H 1.09002 * 109.39965 * 42.80834 * 3 2 1 33 33 H 1.08999 * 109.36422 * 283.13588 * 3 2 1 34 34 H 1.09001 * 110.73701 * 34.44373 * 5 4 3 35 35 H 1.09008 * 110.73250 * 271.31883 * 5 4 3 36 36 H 1.08990 * 109.88023 * 97.88232 * 6 5 4 37 37 H 1.08999 * 109.87741 * 219.03214 * 6 5 4 38 38 H 1.07995 * 119.94965 * 359.97438 * 11 10 8 39 39 H 1.07998 * 119.65644 * 180.02562 * 12 11 10 40 40 H 1.07993 * 119.71459 * 179.97438 * 13 12 11 41 41 H 1.07997 * 120.05672 * 179.97438 * 14 13 12 42 42 H 0.97004 * 120.00163 * 179.97438 * 19 18 16 43 43 H 1.09000 * 110.37604 * 142.09183 * 24 7 6 44 44 H 1.09003 * 110.37635 * 264.32374 * 24 7 6 45 45 H 1.09002 * 109.39315 * 168.22240 * 26 25 4 46 46 H 1.09003 * 109.39396 * 287.92630 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1699 1.2815 0.0000 4 6 3.6174 1.0787 0.4181 5 6 4.4361 2.3662 0.1867 6 6 5.5626 2.2564 1.2380 7 7 5.0957 1.3342 2.2845 8 6 5.7988 0.9598 3.3716 9 8 5.2825 0.2530 4.2158 10 6 7.1938 1.4070 3.5374 11 6 8.1125 1.2385 2.5049 12 6 9.4193 1.6598 2.6643 13 6 9.8326 2.2531 3.8495 14 6 8.9477 2.4332 4.8877 15 6 7.6103 2.0186 4.7488 16 6 6.6950 2.2033 5.8038 17 1 5.6525 2.3861 5.5886 18 6 7.1376 2.1500 7.1338 19 7 6.3657 2.5778 8.0967 20 14 8.8311 1.4670 7.5278 21 1 9.8184 2.5758 7.5530 22 1 8.7999 0.8016 8.8551 23 1 9.2210 0.4804 6.4886 24 6 3.7304 0.8866 1.9475 25 8 4.1987 -0.0174 -0.2745 26 6 3.6079 -1.2768 0.0604 27 6 2.1100 -1.1728 0.0005 28 8 1.4582 -2.1944 -0.0502 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.6835 1.9622 0.6987 33 1 2.1393 1.7108 -1.0014 34 1 3.8245 3.2502 0.3673 35 1 4.8498 2.3844 -0.8217 36 1 6.4663 1.8625 0.7731 37 1 5.7629 3.2367 1.6703 38 1 7.8037 0.7780 1.5782 39 1 10.1260 1.5260 1.8587 40 1 10.8574 2.5761 3.9574 41 1 9.2782 2.8953 5.8062 42 1 6.6716 2.5406 9.0165 43 1 3.6001 -0.1637 2.2082 44 1 2.9917 1.4995 2.4640 45 1 3.9468 -2.0347 -0.6459 46 1 3.9105 -1.5620 1.0679 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272322012.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:01:59 Heat of formation + Delta-G solvation = -66.694539 kcal Electronic energy + Delta-G solvation = -31063.071566 eV Core-core repulsion = 26918.236989 eV Total energy + Delta-G solvation = -4144.834577 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.40613 -39.54606 -38.40866 -37.04393 -35.87885 -35.67509 -33.72938 -31.85921 -30.59824 -30.16644 -29.53830 -28.74279 -27.00503 -25.68821 -25.25665 -23.54469 -21.91543 -21.50088 -21.05032 -18.99659 -18.86001 -18.05275 -17.50368 -17.15721 -16.68252 -16.17026 -15.99358 -15.59977 -15.16654 -15.02705 -14.83114 -14.43308 -14.15621 -13.96096 -13.71065 -13.58704 -13.35668 -13.18166 -12.83099 -12.69809 -12.51954 -12.37455 -12.22765 -12.14540 -11.98003 -11.80519 -11.65723 -11.40884 -11.18302 -10.96817 -10.88640 -10.53210 -10.40507 -10.04588 -9.80962 -9.65164 -9.28035 -9.10543 -8.88752 -8.19906 -7.82003 -7.71734 -7.03001 -4.58271 2.18351 2.23642 2.52177 2.56656 3.05801 3.16216 3.24021 3.28725 3.39654 3.69285 3.92584 3.97596 4.14376 4.31850 4.43050 4.47512 4.84877 4.97298 5.01565 5.03242 5.10503 5.17605 5.25553 5.29099 5.33875 5.40429 5.54885 5.55696 5.64402 5.76466 5.84223 5.93317 5.95515 6.01282 6.05785 6.27605 6.50684 6.60297 6.70855 6.75002 7.01413 7.04372 7.19566 7.40653 7.53788 7.69685 7.74846 7.95063 8.08153 8.26988 8.51483 8.66865 9.04436 9.98226 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.016897 B = 0.003254 C = 0.003009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1656.723419 B = 8602.836777 C = 9302.328710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.609 5.609 3 C 0.102 3.898 4 C 0.084 3.916 5 C -0.112 4.112 6 C 0.109 3.891 7 N -0.623 5.623 8 C 0.599 3.401 9 O -0.530 6.530 10 C -0.239 4.239 11 C -0.042 4.042 12 C -0.253 4.253 13 C -0.063 4.063 14 C -0.235 4.235 15 C 0.123 3.877 16 C -0.414 4.414 17 H 0.092 0.908 18 C 0.084 3.916 19 N -0.796 5.796 20 Si 0.915 3.085 21 H -0.268 1.268 22 H -0.289 1.289 23 H -0.242 1.242 24 C 0.087 3.913 25 O -0.345 6.345 26 C 0.046 3.954 27 C 0.491 3.509 28 O -0.544 6.544 29 H 0.091 0.909 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.093 0.907 33 H 0.082 0.918 34 H 0.095 0.905 35 H 0.096 0.904 36 H 0.075 0.925 37 H 0.073 0.927 38 H 0.099 0.901 39 H 0.097 0.903 40 H 0.096 0.904 41 H 0.105 0.895 42 H 0.288 0.712 43 H 0.077 0.923 44 H 0.075 0.925 45 H 0.134 0.866 46 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.765 1.661 -16.057 17.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.343 5.343 3 C -0.022 4.022 4 C 0.042 3.958 5 C -0.150 4.150 6 C -0.014 4.014 7 N -0.360 5.360 8 C 0.392 3.608 9 O -0.405 6.405 10 C -0.244 4.244 11 C -0.061 4.061 12 C -0.272 4.272 13 C -0.081 4.081 14 C -0.254 4.254 15 C 0.118 3.882 16 C -0.441 4.441 17 H 0.110 0.890 18 C -0.137 4.137 19 N -0.418 5.418 20 Si 0.742 3.258 21 H -0.195 1.195 22 H -0.217 1.217 23 H -0.165 1.165 24 C -0.037 4.037 25 O -0.263 6.263 26 C -0.033 4.033 27 C 0.279 3.721 28 O -0.422 6.422 29 H 0.109 0.891 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.111 0.889 33 H 0.101 0.899 34 H 0.113 0.887 35 H 0.115 0.885 36 H 0.093 0.907 37 H 0.091 0.909 38 H 0.117 0.883 39 H 0.115 0.885 40 H 0.114 0.886 41 H 0.123 0.877 42 H 0.099 0.901 43 H 0.095 0.905 44 H 0.093 0.907 45 H 0.152 0.848 46 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -6.295 0.793 -15.371 16.629 hybrid contribution 0.397 -0.112 0.514 0.659 sum -5.898 0.681 -14.857 15.999 Atomic orbital electron populations 1.21780 0.78885 1.04734 1.01575 1.47392 1.07646 1.05970 1.73258 1.21909 0.91383 0.85632 1.03237 1.22367 0.91852 0.89445 0.92087 1.22593 0.97085 0.94269 1.01062 1.22007 0.96966 0.94535 0.87907 1.48499 1.14971 1.48099 1.24429 1.18145 0.85825 0.78631 0.78217 1.90737 1.71304 1.37860 1.40616 1.19306 0.92110 1.14290 0.98647 1.20725 0.93451 0.96305 0.95604 1.20274 0.95957 1.12245 0.98714 1.20721 0.97391 0.96394 0.93603 1.21073 0.95068 1.09806 0.99472 1.17433 0.91584 0.87673 0.91470 1.19512 0.97288 1.38067 0.89215 0.89038 1.26249 0.99553 0.91925 0.95938 1.69561 1.38090 1.32258 1.01938 0.86277 0.80875 0.80682 0.78014 1.19465 1.21652 1.16478 1.22631 0.86715 1.01592 0.92723 1.88021 1.59520 1.13698 1.65069 1.22870 0.87631 0.87879 1.04921 1.21017 0.91843 0.83361 0.75921 1.90725 1.67362 1.34034 1.50043 0.89051 0.91792 0.91984 0.88927 0.89942 0.88660 0.88499 0.90669 0.90852 0.88311 0.88460 0.88552 0.87695 0.90117 0.90518 0.90712 0.84843 0.88536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.61 10.59 59.85 0.63 1.25 16 2 N -0.61 -6.32 3.23 -182.82 -0.59 -6.92 16 3 C 0.10 0.84 5.43 -4.67 -0.03 0.81 16 4 C 0.08 0.88 0.82 -89.61 -0.07 0.81 16 5 C -0.11 -1.00 6.10 -25.27 -0.15 -1.16 16 6 C 0.11 1.44 6.11 -2.94 -0.02 1.42 16 7 N -0.62 -10.75 3.33 -171.73 -0.57 -11.32 16 8 C 0.60 13.54 6.59 -12.52 -0.08 13.45 16 9 O -0.53 -14.05 16.34 5.27 0.09 -13.96 16 10 C -0.24 -5.51 5.31 -104.36 -0.55 -6.06 16 11 C -0.04 -0.84 8.39 -39.22 -0.33 -1.17 16 12 C -0.25 -4.86 10.03 -39.37 -0.39 -5.26 16 13 C -0.06 -1.27 10.01 -39.59 -0.40 -1.67 16 14 C -0.24 -5.46 7.08 -38.88 -0.28 -5.73 16 15 C 0.12 3.09 5.12 -106.54 -0.55 2.54 16 16 C -0.41 -11.37 8.38 -37.81 -0.32 -11.68 16 17 H 0.09 2.73 7.42 -52.48 -0.39 2.34 16 18 C 0.08 2.23 5.46 -17.30 -0.09 2.13 16 19 N -0.80 -21.32 13.92 55.56 0.77 -20.55 16 20 Si 0.92 20.96 24.46 -169.99 -4.16 16.80 16 21 H -0.27 -5.77 6.64 56.52 0.38 -5.40 16 22 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 23 H -0.24 -5.75 6.81 56.52 0.38 -5.36 16 24 C 0.09 1.24 5.78 -2.63 -0.02 1.23 16 25 O -0.34 -4.06 10.43 -35.23 -0.37 -4.43 16 26 C 0.05 0.54 6.37 35.80 0.23 0.76 16 27 C 0.49 6.30 7.48 -11.61 -0.09 6.21 16 28 O -0.54 -8.62 16.10 5.55 0.09 -8.53 16 29 H 0.09 0.93 6.71 -51.93 -0.35 0.58 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.09 0.61 7.83 -51.93 -0.41 0.21 16 33 H 0.08 0.53 8.13 -51.93 -0.42 0.11 16 34 H 0.09 0.64 8.01 -51.93 -0.42 0.22 16 35 H 0.10 0.72 8.14 -51.92 -0.42 0.30 16 36 H 0.08 0.99 6.03 -51.93 -0.31 0.68 16 37 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.10 1.71 6.75 -52.49 -0.35 1.36 16 39 H 0.10 1.60 8.06 -52.49 -0.42 1.18 16 40 H 0.10 1.68 8.06 -52.49 -0.42 1.25 16 41 H 0.11 2.41 4.59 -52.49 -0.24 2.17 16 42 H 0.29 6.95 8.29 -40.82 -0.34 6.61 16 43 H 0.08 1.22 5.96 -51.93 -0.31 0.91 16 44 H 0.07 1.03 7.81 -51.93 -0.41 0.62 16 45 H 0.13 1.32 8.14 -51.93 -0.42 0.90 16 46 H 0.10 1.22 6.65 -51.93 -0.35 0.88 16 LS Contribution 364.40 15.07 5.49 5.49 Total: -1.00 -33.56 364.40 -7.84 -41.40 By element: Atomic # 1 Polarization: 10.22 SS G_CDS: -6.09 Total: 4.13 kcal Atomic # 6 Polarization: 0.38 SS G_CDS: -2.50 Total: -2.12 kcal Atomic # 7 Polarization: -38.39 SS G_CDS: -0.39 Total: -38.78 kcal Atomic # 8 Polarization: -26.73 SS G_CDS: -0.19 Total: -26.93 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -4.16 Total: 16.80 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -33.56 -7.84 -41.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272322012.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.296 kcal (2) G-P(sol) polarization free energy of solvation -33.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds