Wall clock time and date at job start Wed Apr 1 2020 03:00:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86806 * 120.00069 * 2 1 4 4 H 1.48502 * 109.46836 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47092 * 299.99936 * 3 2 1 6 6 H 1.48491 * 109.46977 * 60.00369 * 3 2 1 7 7 C 1.37880 * 120.00047 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00020 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00147 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.47303 * 180.02562 * 9 7 2 11 11 S 1.81408 * 109.46946 * 179.97438 * 10 9 7 12 12 O 1.42097 * 110.53976 * 68.37533 * 11 10 9 13 13 O 1.42099 * 110.54118 * 291.62109 * 11 10 9 14 14 N 1.65600 * 104.44653 * 179.97438 * 11 10 9 15 15 C 1.46496 * 120.00424 * 64.99880 * 14 11 10 16 16 H 1.09008 * 110.88367 * 338.88158 * 15 14 11 17 17 C 1.55154 * 111.00463 * 102.80194 * 15 14 11 18 18 C 1.54325 * 102.94303 * 153.57766 * 17 15 14 19 19 N 1.47290 * 107.30599 * 337.81911 * 18 17 15 20 20 C 1.34774 * 125.79121 * 178.92556 * 19 18 17 21 21 O 1.21284 * 119.99787 * 179.97438 * 20 19 18 22 22 C 1.50700 * 120.00339 * 359.97438 * 20 19 18 23 23 C 1.54265 * 110.03277 * 297.17381 * 22 20 19 24 24 C 1.54892 * 104.19199 * 217.10316 * 23 22 20 25 25 C 1.54890 * 102.75200 * 37.94222 * 24 23 22 26 26 C 1.53873 * 110.03654 * 180.02562 * 22 20 19 27 27 C 1.47425 * 108.55742 * 358.92448 * 19 18 17 28 28 H 0.97003 * 120.00347 * 359.97438 * 1 2 3 29 29 H 1.08995 * 109.47546 * 59.99690 * 9 7 2 30 30 H 1.09005 * 109.46738 * 300.00373 * 9 7 2 31 31 H 1.09003 * 109.47053 * 59.99748 * 10 9 7 32 32 H 1.08990 * 109.46807 * 299.99631 * 10 9 7 33 33 H 0.97000 * 119.99569 * 245.00422 * 14 11 10 34 34 H 1.09002 * 110.72290 * 271.94453 * 17 15 14 35 35 H 1.08994 * 110.71922 * 35.03921 * 17 15 14 36 36 H 1.09004 * 109.88239 * 97.22707 * 18 17 15 37 37 H 1.08999 * 109.88411 * 218.39137 * 18 17 15 38 38 H 1.09000 * 110.01032 * 58.61211 * 22 20 19 39 39 H 1.09001 * 110.48537 * 335.77843 * 23 22 20 40 40 H 1.08994 * 110.48930 * 98.42390 * 23 22 20 41 41 H 1.09002 * 110.75547 * 279.62186 * 24 23 22 42 42 H 1.09004 * 110.75487 * 156.25544 * 24 23 22 43 43 H 1.09002 * 110.48664 * 203.38071 * 25 24 23 44 44 H 1.08995 * 110.59870 * 80.79002 * 25 24 23 45 45 H 1.08994 * 110.03092 * 238.57503 * 26 22 20 46 46 H 1.09008 * 110.02877 * 0.02562 * 26 22 20 47 47 H 1.09002 * 110.36696 * 265.26054 * 27 19 18 48 48 H 1.08995 * 110.36608 * 143.04891 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 16 1.3382 -5.2331 0.0002 12 8 0.6638 -5.4200 -1.2365 13 8 0.6647 -5.4194 1.2375 14 7 2.5204 -6.3927 -0.0006 15 6 3.4196 -6.5229 1.1486 16 1 3.4445 -5.6005 1.7290 17 6 3.0159 -7.7291 2.0369 18 6 4.3469 -8.1223 2.7117 19 7 5.4364 -7.6024 1.8678 20 6 6.7547 -7.7185 2.1225 21 8 7.5649 -7.2488 1.3518 22 6 7.2222 -8.4319 3.3649 23 6 6.7296 -7.6837 4.6209 24 6 7.9004 -7.8174 5.6261 25 6 9.1479 -7.6808 4.7183 26 6 8.7597 -8.4296 3.4272 27 6 4.8433 -6.9327 0.6960 28 1 -0.4851 0.8400 0.0004 29 1 0.6240 -2.5568 -0.8902 30 1 0.6247 -2.5570 0.8897 31 1 2.8720 -3.6043 0.8895 32 1 2.8718 -3.6043 -0.8905 33 1 2.6174 -6.9858 -0.7620 34 1 2.2792 -7.4297 2.7824 35 1 2.6337 -8.5470 1.4262 36 1 4.4041 -7.6781 3.7055 37 1 4.4197 -9.2075 2.7838 38 1 6.8496 -9.4562 3.3694 39 1 6.5420 -6.6349 4.3910 40 1 5.8305 -8.1550 5.0176 41 1 7.8819 -8.7924 6.1131 42 1 7.8697 -7.0154 6.3637 43 1 10.0134 -8.1500 5.1861 44 1 9.3530 -6.6320 4.5038 45 1 9.1335 -9.4528 3.4626 46 1 9.1677 -7.9120 2.5589 47 1 4.7898 -7.6210 -0.1476 48 1 5.4250 -6.0506 0.4285 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000133263316.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:00:35 Heat of formation + Delta-G solvation = -127.278465 kcal Electronic energy + Delta-G solvation = -28531.928994 eV Core-core repulsion = 24519.911252 eV Total energy + Delta-G solvation = -4012.017742 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.160 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.71915 -38.55752 -37.11299 -36.63098 -35.52364 -34.49388 -33.93096 -31.20520 -30.81713 -29.94116 -29.05774 -27.95133 -25.64579 -24.10305 -21.78951 -21.61999 -21.37811 -20.95783 -19.27827 -19.03554 -17.82935 -17.65883 -16.64913 -16.58682 -16.03838 -15.91969 -15.46778 -15.33807 -14.94998 -14.64389 -14.51168 -14.03364 -13.89993 -13.63141 -13.42667 -13.27733 -12.86210 -12.58870 -12.49964 -12.20895 -12.03093 -11.79902 -11.68931 -11.66720 -11.60991 -11.57930 -11.45253 -11.27997 -11.17359 -11.13141 -11.07244 -10.97673 -10.84091 -10.43805 -10.42163 -9.99700 -9.87656 -9.57721 -9.10256 -8.95096 -8.53069 -6.15063 -4.20613 0.68693 2.36674 2.54893 3.09134 3.24193 3.31796 3.35366 3.95595 4.11476 4.18663 4.24360 4.25140 4.35646 4.45070 4.55309 4.69323 4.74402 4.82928 4.91362 4.98198 5.08604 5.11290 5.18717 5.20347 5.21952 5.28462 5.33001 5.45529 5.49864 5.56192 5.59038 5.59765 5.69059 5.69917 5.77533 5.79772 5.86109 5.97158 6.02351 6.10508 6.43833 6.93587 7.19350 7.26423 7.32086 7.78383 7.89039 8.14540 8.83199 9.44603 10.95970 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.011371 B = 0.002681 C = 0.002330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2461.814582 B =10441.659854 C =12016.808203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.058 3.942 3 Si 0.899 3.101 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.520 4.520 8 H 0.062 0.938 9 C 0.028 3.972 10 C -0.590 4.590 11 S 2.592 3.408 12 O -0.964 6.964 13 O -0.963 6.963 14 N -1.116 6.116 15 C 0.142 3.858 16 H 0.106 0.894 17 C -0.148 4.148 18 C 0.097 3.903 19 N -0.618 5.618 20 C 0.535 3.465 21 O -0.536 6.536 22 C -0.108 4.108 23 C -0.117 4.117 24 C -0.124 4.124 25 C -0.125 4.125 26 C -0.120 4.120 27 C 0.099 3.901 28 H 0.265 0.735 29 H 0.034 0.966 30 H 0.034 0.966 31 H 0.117 0.883 32 H 0.122 0.878 33 H 0.414 0.586 34 H 0.098 0.902 35 H 0.085 0.915 36 H 0.078 0.922 37 H 0.072 0.928 38 H 0.097 0.903 39 H 0.072 0.928 40 H 0.075 0.925 41 H 0.069 0.931 42 H 0.070 0.930 43 H 0.066 0.934 44 H 0.067 0.933 45 H 0.067 0.933 46 H 0.090 0.910 47 H 0.076 0.924 48 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.687 -20.821 9.472 26.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.145 4.145 3 Si 0.727 3.273 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.560 4.560 8 H 0.080 0.920 9 C -0.011 4.011 10 C -0.723 4.723 11 S 2.689 3.311 12 O -0.954 6.954 13 O -0.952 6.952 14 N -0.871 5.871 15 C 0.033 3.967 16 H 0.124 0.876 17 C -0.187 4.187 18 C -0.026 4.026 19 N -0.353 5.353 20 C 0.324 3.676 21 O -0.413 6.413 22 C -0.129 4.129 23 C -0.154 4.154 24 C -0.161 4.161 25 C -0.162 4.162 26 C -0.158 4.158 27 C -0.026 4.026 28 H 0.074 0.926 29 H 0.052 0.948 30 H 0.052 0.948 31 H 0.136 0.864 32 H 0.141 0.859 33 H 0.248 0.752 34 H 0.116 0.884 35 H 0.104 0.896 36 H 0.096 0.904 37 H 0.090 0.910 38 H 0.115 0.885 39 H 0.091 0.909 40 H 0.094 0.906 41 H 0.088 0.912 42 H 0.088 0.912 43 H 0.085 0.915 44 H 0.086 0.914 45 H 0.085 0.915 46 H 0.108 0.892 47 H 0.094 0.906 48 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 13.080 -20.560 9.220 26.054 hybrid contribution 0.948 0.906 -0.377 1.364 sum 14.028 -19.654 8.843 25.715 Atomic orbital electron populations 1.69957 1.06119 1.27131 1.49635 1.25065 0.94968 0.99567 0.94865 0.86419 0.79982 0.83159 0.77785 1.19611 1.20777 1.20778 1.21040 0.93117 0.89738 1.52083 0.91973 1.18967 0.92654 0.90545 0.98929 1.30467 1.13738 1.17997 1.10145 1.05656 0.74627 0.76533 0.74242 1.93565 1.71402 1.85265 1.45213 1.93550 1.71198 1.84918 1.45568 1.55845 1.52125 1.52351 1.26769 1.21775 0.88532 0.99574 0.86862 0.87593 1.23164 0.96408 0.98859 1.00300 1.22262 0.85949 0.99301 0.95061 1.48424 1.05222 1.57032 1.24633 1.20315 0.80206 0.79718 0.87342 1.90695 1.52372 1.48841 1.49389 1.21914 0.98051 1.00190 0.92784 1.22420 0.98692 1.00764 0.93566 1.22507 0.94312 1.01952 0.97365 1.22360 0.97738 1.00895 0.95246 1.22171 0.92554 1.01221 0.99811 1.22489 0.93031 0.98386 0.88657 0.92558 0.94787 0.94797 0.86413 0.85927 0.75199 0.88391 0.89647 0.90414 0.90985 0.88494 0.90915 0.90620 0.91233 0.91168 0.91509 0.91416 0.91457 0.89199 0.90612 0.89321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.25 13.29 55.43 0.74 -25.51 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 3 Si 0.90 21.12 29.54 -169.99 -5.02 16.10 16 4 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 5 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.52 -14.21 9.11 -34.44 -0.31 -14.52 16 8 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 9 C 0.03 0.70 4.98 -27.88 -0.14 0.56 16 10 C -0.59 -10.72 5.93 37.16 0.22 -10.50 16 11 S 2.59 42.63 5.38 -107.50 -0.58 42.05 16 12 O -0.96 -18.96 18.08 -57.54 -1.04 -20.00 16 13 O -0.96 -18.25 17.82 -57.54 -1.03 -19.27 16 14 N -1.12 -12.58 5.50 -3.07 -0.02 -12.60 16 15 C 0.14 1.42 3.48 -65.79 -0.23 1.19 16 16 H 0.11 1.07 7.35 -51.92 -0.38 0.69 16 17 C -0.15 -1.22 6.65 -24.90 -0.17 -1.38 16 18 C 0.10 0.67 6.13 -2.92 -0.02 0.65 16 19 N -0.62 -5.84 3.33 -170.30 -0.57 -6.40 16 20 C 0.54 5.83 7.06 -10.99 -0.08 5.76 16 21 O -0.54 -7.92 15.46 5.55 0.09 -7.84 16 22 C -0.11 -0.83 2.78 -90.65 -0.25 -1.08 16 23 C -0.12 -0.76 4.97 -25.07 -0.12 -0.89 16 24 C -0.12 -0.73 6.91 -24.74 -0.17 -0.90 16 25 C -0.12 -0.86 6.83 -25.10 -0.17 -1.03 16 26 C -0.12 -0.96 6.40 -25.64 -0.16 -1.12 16 27 C 0.10 0.97 6.57 -2.53 -0.02 0.96 16 28 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 29 H 0.03 0.90 8.14 -51.93 -0.42 0.47 16 30 H 0.03 0.89 8.14 -51.93 -0.42 0.46 16 31 H 0.12 1.89 7.56 -51.92 -0.39 1.50 16 32 H 0.12 2.02 8.14 -51.93 -0.42 1.60 16 33 H 0.41 3.81 8.78 -34.47 -0.30 3.51 16 34 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.08 0.45 6.21 -51.93 -0.32 0.13 16 37 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 38 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.07 0.58 7.85 -51.93 -0.41 0.17 16 40 H 0.08 0.37 7.11 -51.93 -0.37 0.00 16 41 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 42 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 43 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 44 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 46 H 0.09 0.94 6.39 -51.92 -0.33 0.61 16 47 H 0.08 0.68 8.05 -51.93 -0.42 0.26 16 48 H 0.09 0.98 8.03 -51.93 -0.42 0.56 16 LS Contribution 394.05 15.07 5.94 5.94 Total: -1.00 -36.38 394.05 -11.17 -47.55 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: -7.96 Total: 0.77 kcal Atomic # 6 Polarization: -19.07 SS G_CDS: -1.72 Total: -20.78 kcal Atomic # 7 Polarization: -44.67 SS G_CDS: 0.15 Total: -44.51 kcal Atomic # 8 Polarization: -45.13 SS G_CDS: -1.98 Total: -47.11 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Atomic # 16 Polarization: 42.63 SS G_CDS: -0.58 Total: 42.05 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -36.38 -11.17 -47.55 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133263316.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.729 kcal (2) G-P(sol) polarization free energy of solvation -36.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds