Wall clock time and date at job start Wed Apr 1 2020 03:00:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86806 * 120.00069 * 2 1 4 4 H 1.48502 * 109.46836 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47092 * 299.99936 * 3 2 1 6 6 H 1.48491 * 109.46977 * 60.00369 * 3 2 1 7 7 C 1.37880 * 120.00047 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00020 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00147 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.47303 * 180.02562 * 9 7 2 11 11 S 1.81408 * 109.46946 * 179.97438 * 10 9 7 12 12 O 1.42097 * 110.53976 * 68.37533 * 11 10 9 13 13 O 1.42099 * 110.54118 * 291.62109 * 11 10 9 14 14 N 1.65600 * 104.44653 * 179.97438 * 11 10 9 15 15 C 1.46496 * 120.00424 * 64.99880 * 14 11 10 16 16 H 1.09008 * 110.88367 * 338.88158 * 15 14 11 17 17 C 1.55154 * 111.00463 * 102.80194 * 15 14 11 18 18 C 1.54325 * 102.94303 * 153.57766 * 17 15 14 19 19 N 1.47290 * 107.30599 * 337.81911 * 18 17 15 20 20 C 1.34774 * 125.79121 * 178.92556 * 19 18 17 21 21 O 1.21284 * 119.99787 * 179.97438 * 20 19 18 22 22 C 1.50700 * 120.00339 * 359.97438 * 20 19 18 23 23 C 1.54265 * 110.03277 * 297.17381 * 22 20 19 24 24 C 1.54892 * 104.19199 * 217.10316 * 23 22 20 25 25 C 1.54890 * 102.75200 * 37.94222 * 24 23 22 26 26 C 1.53873 * 110.03654 * 180.02562 * 22 20 19 27 27 C 1.47425 * 108.55742 * 358.92448 * 19 18 17 28 28 H 0.97003 * 120.00347 * 359.97438 * 1 2 3 29 29 H 1.08995 * 109.47546 * 59.99690 * 9 7 2 30 30 H 1.09005 * 109.46738 * 300.00373 * 9 7 2 31 31 H 1.09003 * 109.47053 * 59.99748 * 10 9 7 32 32 H 1.08990 * 109.46807 * 299.99631 * 10 9 7 33 33 H 0.97000 * 119.99569 * 245.00422 * 14 11 10 34 34 H 1.09002 * 110.72290 * 271.94453 * 17 15 14 35 35 H 1.08994 * 110.71922 * 35.03921 * 17 15 14 36 36 H 1.09004 * 109.88239 * 97.22707 * 18 17 15 37 37 H 1.08999 * 109.88411 * 218.39137 * 18 17 15 38 38 H 1.09000 * 110.01032 * 58.61211 * 22 20 19 39 39 H 1.09001 * 110.48537 * 335.77843 * 23 22 20 40 40 H 1.08994 * 110.48930 * 98.42390 * 23 22 20 41 41 H 1.09002 * 110.75547 * 279.62186 * 24 23 22 42 42 H 1.09004 * 110.75487 * 156.25544 * 24 23 22 43 43 H 1.09002 * 110.48664 * 203.38071 * 25 24 23 44 44 H 1.08995 * 110.59870 * 80.79002 * 25 24 23 45 45 H 1.08994 * 110.03092 * 238.57503 * 26 22 20 46 46 H 1.09008 * 110.02877 * 0.02562 * 26 22 20 47 47 H 1.09002 * 110.36696 * 265.26054 * 27 19 18 48 48 H 1.08995 * 110.36608 * 143.04891 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 16 1.3382 -5.2331 0.0002 12 8 0.6638 -5.4200 -1.2365 13 8 0.6647 -5.4194 1.2375 14 7 2.5204 -6.3927 -0.0006 15 6 3.4196 -6.5229 1.1486 16 1 3.4445 -5.6005 1.7290 17 6 3.0159 -7.7291 2.0369 18 6 4.3469 -8.1223 2.7117 19 7 5.4364 -7.6024 1.8678 20 6 6.7547 -7.7185 2.1225 21 8 7.5649 -7.2488 1.3518 22 6 7.2222 -8.4319 3.3649 23 6 6.7296 -7.6837 4.6209 24 6 7.9004 -7.8174 5.6261 25 6 9.1479 -7.6808 4.7183 26 6 8.7597 -8.4296 3.4272 27 6 4.8433 -6.9327 0.6960 28 1 -0.4851 0.8400 0.0004 29 1 0.6240 -2.5568 -0.8902 30 1 0.6247 -2.5570 0.8897 31 1 2.8720 -3.6043 0.8895 32 1 2.8718 -3.6043 -0.8905 33 1 2.6174 -6.9858 -0.7620 34 1 2.2792 -7.4297 2.7824 35 1 2.6337 -8.5470 1.4262 36 1 4.4041 -7.6781 3.7055 37 1 4.4197 -9.2075 2.7838 38 1 6.8496 -9.4562 3.3694 39 1 6.5420 -6.6349 4.3910 40 1 5.8305 -8.1550 5.0176 41 1 7.8819 -8.7924 6.1131 42 1 7.8697 -7.0154 6.3637 43 1 10.0134 -8.1500 5.1861 44 1 9.3530 -6.6320 4.5038 45 1 9.1335 -9.4528 3.4626 46 1 9.1677 -7.9120 2.5589 47 1 4.7898 -7.6210 -0.1476 48 1 5.4250 -6.0506 0.4285 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000133263316.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:00:34 Heat of formation + Delta-G solvation = -153.971179 kcal Electronic energy + Delta-G solvation = -28533.086477 eV Core-core repulsion = 24519.911252 eV Total energy + Delta-G solvation = -4013.175225 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.160 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.46762 -39.29559 -38.12890 -37.80765 -37.00792 -35.90235 -35.42380 -33.13422 -31.59924 -30.56448 -29.59625 -28.67807 -27.60603 -24.83399 -23.62781 -22.39107 -22.01091 -21.52432 -20.44951 -19.82053 -19.18039 -18.56534 -18.32198 -17.55096 -16.99534 -16.89345 -16.68559 -16.53555 -16.35224 -15.65930 -15.62625 -15.08756 -14.69440 -14.57220 -14.48892 -14.23100 -13.97884 -13.74051 -13.62947 -13.37524 -13.24080 -13.13411 -13.09958 -12.96522 -12.79675 -12.65465 -12.48907 -12.27595 -12.24183 -12.12572 -12.01832 -11.87122 -11.75441 -11.73920 -11.62188 -11.40610 -11.19125 -10.81276 -10.66400 -10.43374 -9.70318 -8.27572 -6.40942 -0.70290 1.39546 1.39940 1.53094 1.56172 1.65727 2.07398 2.36567 2.78085 3.06124 3.25875 3.30997 3.50732 3.58197 3.68411 3.82468 3.88587 3.96337 4.06844 4.19965 4.22038 4.28439 4.40663 4.48075 4.54200 4.58373 4.64465 4.70353 4.74861 4.77647 4.84824 4.91503 5.00167 5.04716 5.10285 5.19014 5.24159 5.25940 5.27381 5.28555 5.31691 5.45897 5.48557 5.67857 6.05267 6.07440 6.45777 6.72990 7.10233 7.29296 8.84766 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.011371 B = 0.002681 C = 0.002330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2461.814582 B =10441.659854 C =12016.808203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.002 4.002 3 Si 0.971 3.029 4 H -0.259 1.259 5 H -0.278 1.278 6 H -0.276 1.276 7 C -0.539 4.539 8 H 0.072 0.928 9 C 0.021 3.979 10 C -0.595 4.595 11 S 2.628 3.372 12 O -0.996 6.996 13 O -0.985 6.985 14 N -1.095 6.095 15 C 0.133 3.867 16 H 0.105 0.895 17 C -0.146 4.146 18 C 0.098 3.902 19 N -0.617 5.617 20 C 0.528 3.472 21 O -0.586 6.586 22 C -0.103 4.103 23 C -0.115 4.115 24 C -0.119 4.119 25 C -0.127 4.127 26 C -0.122 4.122 27 C 0.099 3.901 28 H 0.268 0.732 29 H 0.007 0.993 30 H 0.010 0.990 31 H 0.139 0.861 32 H 0.139 0.861 33 H 0.428 0.572 34 H 0.097 0.903 35 H 0.096 0.904 36 H 0.092 0.908 37 H 0.100 0.900 38 H 0.124 0.876 39 H 0.053 0.947 40 H 0.100 0.900 41 H 0.087 0.913 42 H 0.072 0.928 43 H 0.078 0.922 44 H 0.049 0.951 45 H 0.083 0.917 46 H 0.058 0.942 47 H 0.087 0.913 48 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.903 -22.560 10.960 29.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.201 4.201 3 Si 0.795 3.205 4 H -0.183 1.183 5 H -0.204 1.204 6 H -0.202 1.202 7 C -0.578 4.578 8 H 0.090 0.910 9 C -0.018 4.018 10 C -0.726 4.726 11 S 2.723 3.277 12 O -0.986 6.986 13 O -0.975 6.975 14 N -0.855 5.855 15 C 0.024 3.976 16 H 0.123 0.877 17 C -0.185 4.185 18 C -0.024 4.024 19 N -0.350 5.350 20 C 0.318 3.682 21 O -0.467 6.467 22 C -0.124 4.124 23 C -0.153 4.153 24 C -0.157 4.157 25 C -0.164 4.164 26 C -0.160 4.160 27 C -0.026 4.026 28 H 0.076 0.924 29 H 0.025 0.975 30 H 0.029 0.971 31 H 0.157 0.843 32 H 0.158 0.842 33 H 0.265 0.735 34 H 0.115 0.885 35 H 0.115 0.885 36 H 0.111 0.889 37 H 0.118 0.882 38 H 0.141 0.859 39 H 0.072 0.928 40 H 0.118 0.882 41 H 0.106 0.894 42 H 0.091 0.909 43 H 0.097 0.903 44 H 0.068 0.932 45 H 0.101 0.899 46 H 0.076 0.924 47 H 0.105 0.895 48 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 14.284 -22.305 10.716 28.572 hybrid contribution 0.591 1.371 -0.848 1.717 sum 14.874 -20.934 9.868 27.511 Atomic orbital electron populations 1.70089 1.07940 1.28254 1.50941 1.26067 0.95843 1.03718 0.94441 0.85310 0.79074 0.78276 0.77877 1.18263 1.20384 1.20192 1.21544 0.93873 0.90987 1.51383 0.90960 1.18809 0.93565 0.92899 0.96535 1.30407 1.12917 1.17168 1.12138 1.04319 0.74435 0.76016 0.72889 1.93518 1.72802 1.85651 1.46653 1.93519 1.72232 1.85159 1.46561 1.55271 1.51456 1.50728 1.28001 1.21984 0.88345 1.00764 0.86518 0.87702 1.23181 0.97211 0.98077 1.00036 1.22457 0.84012 1.01028 0.94938 1.48505 1.05468 1.56390 1.24681 1.20948 0.80138 0.79283 0.87790 1.90675 1.53717 1.51064 1.51206 1.21988 0.97668 1.01206 0.91518 1.22443 0.99976 0.99733 0.93106 1.22513 0.93099 1.03061 0.96988 1.22369 0.99016 0.99807 0.95224 1.22172 0.93044 1.01817 0.98966 1.22432 0.92477 0.98243 0.89480 0.92358 0.97471 0.97125 0.84277 0.84239 0.73485 0.88480 0.88524 0.88936 0.88213 0.85861 0.92769 0.88159 0.89415 0.90939 0.90301 0.93197 0.89870 0.92350 0.89531 0.90976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.39 13.29 21.45 0.28 -56.11 16 2 C 0.00 -0.12 5.46 84.66 0.46 0.34 16 3 Si 0.97 43.46 29.54 68.60 2.03 45.48 16 4 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 5 H -0.28 -12.20 7.11 99.48 0.71 -11.50 16 6 H -0.28 -12.04 7.11 99.48 0.71 -11.34 16 7 C -0.54 -29.77 9.11 25.60 0.23 -29.54 16 8 H 0.07 3.73 7.74 -2.91 -0.02 3.71 16 9 C 0.02 1.07 4.98 29.85 0.15 1.21 16 10 C -0.59 -21.56 5.93 71.98 0.43 -21.14 16 11 S 2.63 85.35 5.38 -56.49 -0.30 85.05 16 12 O -1.00 -39.17 18.08 -127.65 -2.31 -41.47 16 13 O -0.99 -36.92 17.82 -127.65 -2.27 -39.19 16 14 N -1.09 -22.89 5.50 -163.62 -0.90 -23.79 16 15 C 0.13 2.41 3.48 46.38 0.16 2.57 16 16 H 0.11 1.96 7.35 -2.38 -0.02 1.94 16 17 C -0.15 -1.98 6.65 31.78 0.21 -1.77 16 18 C 0.10 1.01 6.13 86.68 0.53 1.54 16 19 N -0.62 -10.46 3.33 -811.11 -2.70 -13.17 16 20 C 0.53 10.99 7.06 87.66 0.62 11.61 16 21 O -0.59 -17.71 15.46 -3.04 -0.05 -17.76 16 22 C -0.10 -1.36 2.78 -10.82 -0.03 -1.39 16 23 C -0.11 -1.20 4.97 31.67 0.16 -1.04 16 24 C -0.12 -1.10 6.91 31.89 0.22 -0.88 16 25 C -0.13 -1.60 6.83 31.65 0.22 -1.39 16 26 C -0.12 -1.83 6.40 31.30 0.20 -1.63 16 27 C 0.10 1.81 6.57 86.85 0.57 2.38 16 28 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 29 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 30 H 0.01 0.57 8.14 -2.38 -0.02 0.55 16 31 H 0.14 4.37 7.56 -2.39 -0.02 4.35 16 32 H 0.14 4.53 8.14 -2.40 -0.02 4.51 16 33 H 0.43 6.99 8.78 -96.75 -0.85 6.14 16 34 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.09 0.73 6.21 -2.38 -0.01 0.71 16 37 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 38 H 0.12 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.05 0.78 7.85 -2.39 -0.02 0.76 16 40 H 0.10 0.56 7.11 -2.39 -0.02 0.54 16 41 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 42 H 0.07 0.66 8.14 -2.38 -0.02 0.64 16 43 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 44 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 45 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 46 H 0.06 1.27 6.39 -2.38 -0.02 1.25 16 47 H 0.09 1.40 8.05 -2.39 -0.02 1.38 16 48 H 0.07 1.57 8.03 -2.39 -0.02 1.55 16 Total: -1.00 -81.44 394.05 -1.99 -83.43 By element: Atomic # 1 Polarization: 16.54 SS G_CDS: 0.11 Total: 16.65 kcal Atomic # 6 Polarization: -43.25 SS G_CDS: 4.13 Total: -39.12 kcal Atomic # 7 Polarization: -89.75 SS G_CDS: -3.32 Total: -93.07 kcal Atomic # 8 Polarization: -93.80 SS G_CDS: -4.63 Total: -98.43 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.48 kcal Atomic # 16 Polarization: 85.35 SS G_CDS: -0.30 Total: 85.05 kcal Total: -81.44 -1.99 -83.43 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133263316.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.539 kcal (2) G-P(sol) polarization free energy of solvation -81.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds