Wall clock time and date at job start Wed Apr 1 2020 03:06:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86794 * 119.99495 * 2 1 4 4 H 1.48495 * 109.47116 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47293 * 300.00024 * 3 2 1 6 6 H 1.48499 * 109.47608 * 60.00257 * 3 2 1 7 7 C 1.37873 * 120.00345 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99923 * 179.97438 * 7 2 1 9 9 C 1.50708 * 120.00051 * 0.02562 * 7 2 1 10 10 N 1.46501 * 109.46751 * 179.97438 * 9 7 2 11 11 C 1.34962 * 125.97057 * 125.00134 * 10 9 7 12 12 C 1.35243 * 107.85356 * 179.71745 * 11 10 9 13 13 C 1.40397 * 107.86884 * 0.24300 * 12 11 10 14 14 N 1.40201 * 125.97169 * 179.97438 * 13 12 11 15 15 C 1.34768 * 120.00133 * 359.97438 * 14 13 12 16 16 O 1.21596 * 120.00215 * 359.97438 * 15 14 13 17 17 N 1.34780 * 120.00282 * 180.02562 * 15 14 13 18 18 C 1.46494 * 120.00323 * 179.97438 * 17 15 14 19 19 H 1.08998 * 109.47393 * 34.99817 * 18 17 15 20 20 C 1.53003 * 109.47177 * 274.99670 * 18 17 15 21 21 O 1.42903 * 109.47222 * 295.00195 * 20 18 17 22 22 C 1.53001 * 109.47423 * 155.00106 * 18 17 15 23 23 C 1.50702 * 109.46636 * 294.99681 * 22 18 17 24 24 C 1.38236 * 120.00154 * 269.72411 * 23 22 18 25 25 C 1.38233 * 119.99946 * 179.76777 * 24 23 22 26 26 C 1.38236 * 119.99896 * 0.50663 * 25 24 23 27 27 C 1.38233 * 120.00241 * 359.75219 * 26 25 24 28 28 C 1.38237 * 120.00001 * 359.97438 * 27 26 25 29 29 N 1.31203 * 108.05668 * 359.97438 * 13 12 11 30 30 H 0.96998 * 120.00621 * 0.02562 * 1 2 3 31 31 H 1.08997 * 109.46855 * 59.99877 * 9 7 2 32 32 H 1.09001 * 109.46564 * 299.99623 * 9 7 2 33 33 H 1.08002 * 126.07726 * 359.97438 * 11 10 9 34 34 H 1.08003 * 126.06335 * 180.26555 * 12 11 10 35 35 H 0.96998 * 119.99799 * 179.97438 * 14 13 12 36 36 H 0.96998 * 119.99650 * 359.97438 * 17 15 14 37 37 H 1.09007 * 109.46762 * 55.00067 * 20 18 17 38 38 H 1.08997 * 109.47341 * 174.99801 * 20 18 17 39 39 H 0.96698 * 113.99777 * 179.97438 * 21 20 18 40 40 H 1.08998 * 109.46819 * 54.99506 * 22 18 17 41 41 H 1.08999 * 109.47090 * 174.99907 * 22 18 17 42 42 H 1.08000 * 119.99981 * 0.02562 * 24 23 22 43 43 H 1.08004 * 120.00002 * 180.23323 * 25 24 23 44 44 H 1.08006 * 119.99880 * 179.72510 * 26 25 24 45 45 H 1.08002 * 120.00187 * 179.97438 * 27 26 25 46 46 H 1.07995 * 120.00315 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3466 -0.0006 5 1 1.8902 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2512 -2.4992 0.0005 10 7 2.2033 -3.6126 0.0005 11 6 2.2424 -4.6223 0.8953 12 6 3.2572 -5.4457 0.5471 13 6 3.8662 -4.9169 -0.6020 14 7 4.9597 -5.4701 -1.2832 15 6 5.5205 -6.6132 -0.8415 16 8 5.0786 -7.1645 0.1480 17 7 6.5720 -7.1447 -1.4961 18 6 7.1820 -8.3870 -1.0157 19 1 6.4091 -9.0357 -0.6036 20 6 8.2094 -8.0637 0.0710 21 8 9.2827 -7.3105 -0.4971 22 6 7.8769 -9.0972 -2.1792 23 6 6.8475 -9.5248 -3.1934 24 6 6.2568 -10.7708 -3.0957 25 6 5.3090 -11.1610 -4.0232 26 6 4.9596 -10.3095 -5.0545 27 6 5.5542 -9.0656 -5.1554 28 6 6.4978 -8.6730 -4.2246 29 7 3.2334 -3.8145 -0.9269 30 1 -0.4851 0.8400 -0.0004 31 1 0.6249 -2.5571 -0.8897 32 1 0.6242 -2.5567 0.8904 33 1 1.5784 -4.7521 1.7371 34 1 3.5472 -6.3500 1.0616 35 1 5.3125 -5.0301 -2.0723 36 1 6.9248 -6.7047 -2.2852 37 1 7.7332 -7.4802 0.8591 38 1 8.5986 -8.9913 0.4905 39 1 9.9724 -7.0695 0.1363 40 1 8.5878 -8.4167 -2.6477 41 1 8.4054 -9.9744 -1.8059 42 1 6.5327 -11.4376 -2.2922 43 1 4.8448 -12.1330 -3.9446 44 1 4.2224 -10.6162 -5.7818 45 1 5.2815 -8.4005 -5.9614 46 1 6.9626 -7.7015 -4.3036 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000156025753.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:06:57 Heat of formation + Delta-G solvation = 28.293782 kcal Electronic energy + Delta-G solvation = -29102.272029 eV Core-core repulsion = 24993.849205 eV Total energy + Delta-G solvation = -4108.422823 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.74756 -39.98297 -39.20638 -37.50373 -35.26139 -34.56043 -33.36608 -32.56774 -31.10957 -30.89191 -29.59876 -29.17346 -26.56272 -26.31041 -23.42801 -22.82522 -22.43523 -21.58778 -20.80012 -20.31693 -19.72028 -18.13682 -17.54767 -17.07665 -16.67924 -16.53980 -16.01246 -15.65673 -15.38431 -15.20568 -14.81730 -14.63365 -14.40711 -14.05055 -13.97773 -13.75493 -13.62835 -13.27220 -12.96538 -12.77535 -12.39433 -12.33090 -12.18741 -12.10371 -11.73766 -11.61720 -11.21071 -11.15711 -11.02007 -10.86242 -10.37980 -10.31715 -10.23649 -10.00942 -9.63184 -9.44481 -9.23256 -9.10051 -8.88939 -8.61570 -8.05010 -7.36238 -6.22162 -4.26932 1.12906 1.19072 2.44259 2.72035 3.16615 3.23502 3.30974 3.37683 3.54888 3.65202 3.87910 4.03780 4.28904 4.36804 4.42508 4.58671 4.68188 4.79468 4.89240 5.01344 5.03024 5.11089 5.12966 5.28072 5.34286 5.41824 5.49683 5.57764 5.71605 5.81291 5.84354 5.87287 6.24216 6.26837 6.31250 6.33479 6.42599 6.58890 6.65527 6.78836 6.91458 7.05694 7.16177 7.32874 7.55429 7.72616 7.86554 8.03661 8.11038 8.66337 8.71289 8.84411 9.38613 10.86562 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.013678 B = 0.002289 C = 0.002155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2046.635065 B =12230.559467 C =12989.297895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.061 3.939 3 Si 0.907 3.093 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.282 1.282 7 C -0.526 4.526 8 H 0.069 0.931 9 C 0.258 3.742 10 N -0.321 5.321 11 C 0.050 3.950 12 C -0.286 4.286 13 C 0.277 3.723 14 N -0.643 5.643 15 C 0.715 3.285 16 O -0.572 6.572 17 N -0.729 5.729 18 C 0.177 3.823 19 H 0.103 0.897 20 C 0.060 3.940 21 O -0.570 6.570 22 C -0.084 4.084 23 C -0.081 4.081 24 C -0.117 4.117 25 C -0.118 4.118 26 C -0.125 4.125 27 C -0.117 4.117 28 C -0.112 4.112 29 N -0.308 5.308 30 H 0.266 0.734 31 H 0.044 0.956 32 H 0.056 0.944 33 H 0.167 0.833 34 H 0.160 0.840 35 H 0.406 0.594 36 H 0.397 0.603 37 H 0.057 0.943 38 H 0.054 0.946 39 H 0.378 0.622 40 H 0.088 0.912 41 H 0.087 0.913 42 H 0.121 0.879 43 H 0.120 0.880 44 H 0.119 0.881 45 H 0.121 0.879 46 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.615 -22.096 -5.600 28.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.142 4.142 3 Si 0.734 3.266 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.208 1.208 7 C -0.565 4.565 8 H 0.087 0.913 9 C 0.141 3.859 10 N -0.103 5.103 11 C -0.100 4.100 12 C -0.317 4.317 13 C 0.023 3.977 14 N -0.293 5.293 15 C 0.415 3.585 16 O -0.448 6.448 17 N -0.385 5.385 18 C 0.071 3.929 19 H 0.121 0.879 20 C -0.019 4.019 21 O -0.375 6.375 22 C -0.122 4.122 23 C -0.081 4.081 24 C -0.135 4.135 25 C -0.136 4.136 26 C -0.143 4.143 27 C -0.135 4.135 28 C -0.130 4.130 29 N -0.139 5.139 30 H 0.076 0.924 31 H 0.062 0.938 32 H 0.074 0.926 33 H 0.184 0.816 34 H 0.178 0.822 35 H 0.240 0.760 36 H 0.231 0.769 37 H 0.076 0.924 38 H 0.072 0.928 39 H 0.225 0.775 40 H 0.106 0.894 41 H 0.106 0.894 42 H 0.139 0.861 43 H 0.138 0.862 44 H 0.137 0.863 45 H 0.139 0.861 46 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 15.530 -21.502 -6.048 27.204 hybrid contribution 0.937 0.849 0.311 1.302 sum 16.467 -20.653 -5.736 27.030 Atomic orbital electron populations 1.69928 1.06034 1.27476 1.50000 1.24948 0.94979 0.99545 0.94681 0.86282 0.80073 0.82512 0.77690 1.19573 1.20718 1.20782 1.21308 0.94036 0.89395 1.51713 0.91262 1.19728 0.85630 0.81351 0.99205 1.49039 1.23217 1.19794 1.18259 1.22545 1.00380 0.90305 0.96778 1.21499 1.02173 1.06287 1.01778 1.18785 0.90724 0.93916 0.94288 1.41372 1.31726 1.24779 1.31395 1.15620 0.79859 0.80122 0.82918 1.90850 1.64738 1.62418 1.26795 1.44954 1.33483 1.27334 1.32766 1.20869 0.93771 0.85018 0.93204 0.87879 1.22724 0.88110 0.95187 0.95886 1.86435 1.34981 1.75775 1.40333 1.20819 0.96139 1.01016 0.94187 1.19832 0.97912 0.94315 0.96071 1.21038 0.97230 0.96092 0.99159 1.21138 0.97659 0.99739 0.95080 1.21160 0.99998 0.94520 0.98577 1.21171 0.96714 0.96461 0.99121 1.21011 0.98119 0.99144 0.94726 1.77321 1.03857 1.16264 1.16483 0.92414 0.93790 0.92572 0.81606 0.82234 0.75971 0.76885 0.92443 0.92807 0.77470 0.89379 0.89428 0.86132 0.86193 0.86261 0.86087 0.86345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.56 13.29 55.43 0.74 -24.83 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 3 Si 0.91 21.54 29.54 -169.99 -5.02 16.52 16 4 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.53 -14.80 9.23 -34.44 -0.32 -15.12 16 8 H 0.07 2.03 7.81 -52.49 -0.41 1.62 16 9 C 0.26 6.67 6.26 -5.19 -0.03 6.63 16 10 N -0.32 -7.62 3.67 -62.56 -0.23 -7.85 16 11 C 0.05 1.02 11.44 -17.24 -0.20 0.83 16 12 C -0.29 -5.85 9.61 -39.84 -0.38 -6.23 16 13 C 0.28 5.73 8.11 -154.36 -1.25 4.48 16 14 N -0.64 -10.40 5.45 -15.51 -0.08 -10.48 16 15 C 0.72 10.76 8.50 -86.92 -0.74 10.02 16 16 O -0.57 -10.28 13.13 5.28 0.07 -10.21 16 17 N -0.73 -7.75 4.48 -58.68 -0.26 -8.01 16 18 C 0.18 1.60 2.36 -67.93 -0.16 1.44 16 19 H 0.10 1.08 7.58 -51.93 -0.39 0.69 16 20 C 0.06 0.49 6.85 37.16 0.25 0.75 16 21 O -0.57 -4.41 12.83 -35.23 -0.45 -4.86 16 22 C -0.08 -0.60 4.61 -27.88 -0.13 -0.72 16 23 C -0.08 -0.69 4.95 -104.62 -0.52 -1.21 16 24 C -0.12 -0.99 9.70 -39.58 -0.38 -1.38 16 25 C -0.12 -1.01 10.05 -39.58 -0.40 -1.41 16 26 C -0.12 -1.10 10.05 -39.58 -0.40 -1.50 16 27 C -0.12 -1.05 10.05 -39.58 -0.40 -1.45 16 28 C -0.11 -0.98 9.10 -39.58 -0.36 -1.34 16 29 N -0.31 -7.25 12.42 31.44 0.39 -6.86 16 30 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 31 H 0.04 1.20 8.14 -51.93 -0.42 0.77 16 32 H 0.06 1.42 8.07 -51.93 -0.42 1.00 16 33 H 0.17 2.78 8.06 -52.49 -0.42 2.36 16 34 H 0.16 3.20 5.91 -52.48 -0.31 2.89 16 35 H 0.41 5.45 8.84 -40.82 -0.36 5.09 16 36 H 0.40 3.48 7.84 -40.82 -0.32 3.16 16 37 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 39 H 0.38 1.57 9.12 45.56 0.42 1.99 16 40 H 0.09 0.63 7.67 -51.93 -0.40 0.23 16 41 H 0.09 0.50 8.08 -51.93 -0.42 0.08 16 42 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 43 H 0.12 0.80 8.06 -52.48 -0.42 0.38 16 44 H 0.12 0.85 8.06 -52.48 -0.42 0.43 16 45 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 46 H 0.12 0.85 7.57 -52.49 -0.40 0.45 16 LS Contribution 393.94 15.07 5.94 5.94 Total: -1.00 -34.83 393.94 -9.95 -44.78 By element: Atomic # 1 Polarization: 16.02 SS G_CDS: -5.53 Total: 10.49 kcal Atomic # 6 Polarization: 0.89 SS G_CDS: -5.51 Total: -4.62 kcal Atomic # 7 Polarization: -58.58 SS G_CDS: 0.55 Total: -58.03 kcal Atomic # 8 Polarization: -14.69 SS G_CDS: -0.38 Total: -15.07 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -34.83 -9.95 -44.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156025753.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.078 kcal (2) G-P(sol) polarization free energy of solvation -34.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.784 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds