Wall clock time and date at job start Wed Apr 1 2020 03:06:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86794 * 119.99495 * 2 1 4 4 H 1.48495 * 109.47116 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47293 * 300.00024 * 3 2 1 6 6 H 1.48499 * 109.47608 * 60.00257 * 3 2 1 7 7 C 1.37873 * 120.00345 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99923 * 179.97438 * 7 2 1 9 9 C 1.50708 * 120.00051 * 0.02562 * 7 2 1 10 10 N 1.46501 * 109.46751 * 179.97438 * 9 7 2 11 11 C 1.34962 * 125.97057 * 125.00134 * 10 9 7 12 12 C 1.35243 * 107.85356 * 179.71745 * 11 10 9 13 13 C 1.40397 * 107.86884 * 0.24300 * 12 11 10 14 14 N 1.40201 * 125.97169 * 179.97438 * 13 12 11 15 15 C 1.34768 * 120.00133 * 359.97438 * 14 13 12 16 16 O 1.21596 * 120.00215 * 359.97438 * 15 14 13 17 17 N 1.34780 * 120.00282 * 180.02562 * 15 14 13 18 18 C 1.46494 * 120.00323 * 179.97438 * 17 15 14 19 19 H 1.08998 * 109.47393 * 34.99817 * 18 17 15 20 20 C 1.53003 * 109.47177 * 274.99670 * 18 17 15 21 21 O 1.42903 * 109.47222 * 295.00195 * 20 18 17 22 22 C 1.53001 * 109.47423 * 155.00106 * 18 17 15 23 23 C 1.50702 * 109.46636 * 294.99681 * 22 18 17 24 24 C 1.38236 * 120.00154 * 269.72411 * 23 22 18 25 25 C 1.38233 * 119.99946 * 179.76777 * 24 23 22 26 26 C 1.38236 * 119.99896 * 0.50663 * 25 24 23 27 27 C 1.38233 * 120.00241 * 359.75219 * 26 25 24 28 28 C 1.38237 * 120.00001 * 359.97438 * 27 26 25 29 29 N 1.31203 * 108.05668 * 359.97438 * 13 12 11 30 30 H 0.96998 * 120.00621 * 0.02562 * 1 2 3 31 31 H 1.08997 * 109.46855 * 59.99877 * 9 7 2 32 32 H 1.09001 * 109.46564 * 299.99623 * 9 7 2 33 33 H 1.08002 * 126.07726 * 359.97438 * 11 10 9 34 34 H 1.08003 * 126.06335 * 180.26555 * 12 11 10 35 35 H 0.96998 * 119.99799 * 179.97438 * 14 13 12 36 36 H 0.96998 * 119.99650 * 359.97438 * 17 15 14 37 37 H 1.09007 * 109.46762 * 55.00067 * 20 18 17 38 38 H 1.08997 * 109.47341 * 174.99801 * 20 18 17 39 39 H 0.96698 * 113.99777 * 179.97438 * 21 20 18 40 40 H 1.08998 * 109.46819 * 54.99506 * 22 18 17 41 41 H 1.08999 * 109.47090 * 174.99907 * 22 18 17 42 42 H 1.08000 * 119.99981 * 0.02562 * 24 23 22 43 43 H 1.08004 * 120.00002 * 180.23323 * 25 24 23 44 44 H 1.08006 * 119.99880 * 179.72510 * 26 25 24 45 45 H 1.08002 * 120.00187 * 179.97438 * 27 26 25 46 46 H 1.07995 * 120.00315 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3466 -0.0006 5 1 1.8902 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2512 -2.4992 0.0005 10 7 2.2033 -3.6126 0.0005 11 6 2.2424 -4.6223 0.8953 12 6 3.2572 -5.4457 0.5471 13 6 3.8662 -4.9169 -0.6020 14 7 4.9597 -5.4701 -1.2832 15 6 5.5205 -6.6132 -0.8415 16 8 5.0786 -7.1645 0.1480 17 7 6.5720 -7.1447 -1.4961 18 6 7.1820 -8.3870 -1.0157 19 1 6.4091 -9.0357 -0.6036 20 6 8.2094 -8.0637 0.0710 21 8 9.2827 -7.3105 -0.4971 22 6 7.8769 -9.0972 -2.1792 23 6 6.8475 -9.5248 -3.1934 24 6 6.2568 -10.7708 -3.0957 25 6 5.3090 -11.1610 -4.0232 26 6 4.9596 -10.3095 -5.0545 27 6 5.5542 -9.0656 -5.1554 28 6 6.4978 -8.6730 -4.2246 29 7 3.2334 -3.8145 -0.9269 30 1 -0.4851 0.8400 -0.0004 31 1 0.6249 -2.5571 -0.8897 32 1 0.6242 -2.5567 0.8904 33 1 1.5784 -4.7521 1.7371 34 1 3.5472 -6.3500 1.0616 35 1 5.3125 -5.0301 -2.0723 36 1 6.9248 -6.7047 -2.2852 37 1 7.7332 -7.4802 0.8591 38 1 8.5986 -8.9913 0.4905 39 1 9.9724 -7.0695 0.1363 40 1 8.5878 -8.4167 -2.6477 41 1 8.4054 -9.9744 -1.8059 42 1 6.5327 -11.4376 -2.2922 43 1 4.8448 -12.1330 -3.9446 44 1 4.2224 -10.6162 -5.7818 45 1 5.2815 -8.4005 -5.9614 46 1 6.9626 -7.7015 -4.3036 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000156025753.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:06:56 Heat of formation + Delta-G solvation = 4.571455 kcal Electronic energy + Delta-G solvation = -29103.300706 eV Core-core repulsion = 24993.849205 eV Total energy + Delta-G solvation = -4109.451501 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.22014 -41.12734 -40.05860 -38.25942 -36.26519 -35.85358 -35.25902 -33.54394 -32.53094 -31.72968 -30.95425 -30.35392 -28.46528 -26.92633 -25.15395 -23.73448 -23.43124 -22.53068 -21.97352 -21.49376 -21.16745 -19.26162 -18.69052 -18.30396 -18.19397 -17.64482 -17.18345 -16.77210 -16.54758 -16.18609 -15.98077 -15.80430 -15.64006 -15.44401 -15.01350 -14.77809 -14.44703 -14.24826 -14.22859 -13.90772 -13.78914 -13.66956 -13.58242 -13.03836 -12.95467 -12.78064 -12.72761 -12.30450 -12.26497 -12.04597 -11.81129 -11.78075 -11.61569 -11.36882 -11.11277 -10.86830 -10.72041 -10.18420 -9.76899 -9.70687 -9.54516 -9.03409 -8.32531 -6.46691 0.48349 0.54802 1.09628 1.16740 1.37140 1.38565 1.51890 1.73134 2.13604 2.36419 2.44096 2.90257 2.98810 3.15967 3.44562 3.75299 3.97140 4.00074 4.04067 4.19623 4.28478 4.29479 4.37456 4.42377 4.54419 4.65831 4.68804 4.76763 4.80612 4.86578 4.91715 4.96446 5.02833 5.08219 5.17493 5.21316 5.24699 5.52561 5.57680 5.61214 5.67609 5.76200 5.77726 5.90346 5.99462 6.17490 6.30751 6.64750 6.78036 6.91331 7.16656 7.23308 7.46536 8.75133 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.013678 B = 0.002289 C = 0.002155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2046.635065 B =12230.559467 C =12989.297895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.018 3.982 3 Si 0.972 3.028 4 H -0.275 1.275 5 H -0.273 1.273 6 H -0.269 1.269 7 C -0.545 4.545 8 H 0.051 0.949 9 C 0.273 3.727 10 N -0.346 5.346 11 C 0.056 3.944 12 C -0.292 4.292 13 C 0.285 3.715 14 N -0.638 5.638 15 C 0.714 3.286 16 O -0.601 6.601 17 N -0.710 5.710 18 C 0.173 3.827 19 H 0.090 0.910 20 C 0.067 3.933 21 O -0.579 6.579 22 C -0.071 4.071 23 C -0.090 4.090 24 C -0.127 4.127 25 C -0.131 4.131 26 C -0.139 4.139 27 C -0.134 4.134 28 C -0.124 4.124 29 N -0.349 5.349 30 H 0.272 0.728 31 H 0.021 0.979 32 H 0.059 0.941 33 H 0.201 0.799 34 H 0.167 0.833 35 H 0.418 0.582 36 H 0.408 0.592 37 H 0.031 0.969 38 H 0.081 0.919 39 H 0.395 0.605 40 H 0.092 0.908 41 H 0.109 0.891 42 H 0.138 0.862 43 H 0.135 0.865 44 H 0.130 0.870 45 H 0.129 0.871 46 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.381 -22.733 -5.419 29.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.183 4.183 3 Si 0.796 3.204 4 H -0.199 1.199 5 H -0.198 1.198 6 H -0.195 1.195 7 C -0.584 4.584 8 H 0.070 0.930 9 C 0.154 3.846 10 N -0.128 5.128 11 C -0.093 4.093 12 C -0.323 4.323 13 C 0.030 3.970 14 N -0.289 5.289 15 C 0.413 3.587 16 O -0.479 6.479 17 N -0.365 5.365 18 C 0.068 3.932 19 H 0.108 0.892 20 C -0.013 4.013 21 O -0.387 6.387 22 C -0.108 4.108 23 C -0.090 4.090 24 C -0.145 4.145 25 C -0.149 4.149 26 C -0.157 4.157 27 C -0.152 4.152 28 C -0.142 4.142 29 N -0.180 5.180 30 H 0.082 0.918 31 H 0.039 0.961 32 H 0.077 0.923 33 H 0.218 0.782 34 H 0.184 0.816 35 H 0.255 0.745 36 H 0.244 0.756 37 H 0.049 0.951 38 H 0.099 0.901 39 H 0.244 0.756 40 H 0.111 0.889 41 H 0.127 0.873 42 H 0.156 0.844 43 H 0.153 0.847 44 H 0.148 0.852 45 H 0.147 0.853 46 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 17.352 -22.168 -5.891 28.762 hybrid contribution 0.462 0.902 0.233 1.040 sum 17.814 -21.266 -5.658 28.313 Atomic orbital electron populations 1.70001 1.07204 1.28699 1.50100 1.25744 0.95850 1.02735 0.93926 0.85293 0.78383 0.78370 0.78321 1.19944 1.19831 1.19455 1.21426 0.93345 0.90981 1.52611 0.93027 1.19331 0.85676 0.81548 0.98056 1.48809 1.23840 1.20403 1.19703 1.23151 1.00506 0.88902 0.96734 1.21674 1.02253 1.06486 1.01885 1.19091 0.90902 0.92894 0.94144 1.41407 1.30746 1.25193 1.31603 1.15780 0.80461 0.79612 0.82823 1.90819 1.65826 1.63082 1.28214 1.44910 1.31822 1.27439 1.32361 1.21051 0.93768 0.83980 0.94388 0.89204 1.22586 0.88038 0.96017 0.94614 1.86389 1.35255 1.75834 1.41198 1.20757 0.95542 1.01580 0.92942 1.20038 0.98256 0.94407 0.96323 1.21347 0.97082 0.96497 0.99576 1.21431 0.97879 1.00485 0.95063 1.21427 1.00433 0.94726 0.99153 1.21418 0.97139 0.96911 0.99728 1.21261 0.98226 0.99860 0.94892 1.77241 1.04984 1.18066 1.17700 0.91841 0.96146 0.92348 0.78248 0.81568 0.74535 0.75561 0.95051 0.90088 0.75566 0.88934 0.87320 0.84413 0.84698 0.85182 0.85302 0.85168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.67 13.29 21.45 0.28 -52.39 16 2 C 0.02 0.99 5.46 84.65 0.46 1.45 16 3 Si 0.97 44.04 29.54 68.60 2.03 46.07 16 4 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 5 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 6 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 7 C -0.55 -31.22 9.23 25.60 0.24 -30.99 16 8 H 0.05 3.08 7.81 -2.91 -0.02 3.06 16 9 C 0.27 14.41 6.26 85.64 0.54 14.95 16 10 N -0.35 -16.65 3.67 -351.83 -1.29 -17.94 16 11 C 0.06 2.26 11.44 83.52 0.96 3.21 16 12 C -0.29 -11.83 9.61 22.10 0.21 -11.62 16 13 C 0.29 11.82 8.11 133.31 1.08 12.90 16 14 N -0.64 -20.34 5.45 -321.24 -1.75 -22.10 16 15 C 0.71 20.92 8.50 179.06 1.52 22.44 16 16 O -0.60 -21.31 13.13 -4.02 -0.05 -21.37 16 17 N -0.71 -14.11 4.48 -457.81 -2.05 -16.16 16 18 C 0.17 2.81 2.36 44.99 0.11 2.92 16 19 H 0.09 1.76 7.58 -2.39 -0.02 1.74 16 20 C 0.07 0.96 6.85 71.98 0.49 1.45 16 21 O -0.58 -7.52 12.83 -148.98 -1.91 -9.43 16 22 C -0.07 -0.83 4.61 29.85 0.14 -0.69 16 23 C -0.09 -1.39 4.95 -19.86 -0.10 -1.48 16 24 C -0.13 -1.96 9.70 22.27 0.22 -1.74 16 25 C -0.13 -2.11 10.05 22.27 0.22 -1.88 16 26 C -0.14 -2.38 10.05 22.27 0.22 -2.16 16 27 C -0.13 -2.33 10.05 22.27 0.22 -2.11 16 28 C -0.12 -2.03 9.10 22.27 0.20 -1.83 16 29 N -0.35 -16.68 12.42 -54.44 -0.68 -17.36 16 30 H 0.27 14.51 8.31 -92.71 -0.77 13.74 16 31 H 0.02 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.06 3.01 8.07 -2.39 -0.02 2.99 16 33 H 0.20 6.42 8.06 -2.91 -0.02 6.40 16 34 H 0.17 6.56 5.91 -2.91 -0.02 6.54 16 35 H 0.42 10.97 8.84 -92.71 -0.82 10.15 16 36 H 0.41 6.44 7.84 -92.71 -0.73 5.72 16 37 H 0.03 0.62 8.14 -2.38 -0.02 0.60 16 38 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 39 H 0.39 2.31 9.12 -74.06 -0.68 1.63 16 40 H 0.09 1.05 7.67 -2.39 -0.02 1.04 16 41 H 0.11 0.87 8.08 -2.39 -0.02 0.85 16 42 H 0.14 1.53 8.06 -2.91 -0.02 1.51 16 43 H 0.14 1.64 8.06 -2.91 -0.02 1.61 16 44 H 0.13 1.79 8.06 -2.91 -0.02 1.77 16 45 H 0.13 1.90 8.06 -2.91 -0.02 1.87 16 46 H 0.13 1.68 7.57 -2.91 -0.02 1.66 16 Total: -1.00 -75.15 393.94 0.13 -75.03 By element: Atomic # 1 Polarization: 32.01 SS G_CDS: -1.18 Total: 30.82 kcal Atomic # 6 Polarization: -1.91 SS G_CDS: 6.73 Total: 4.82 kcal Atomic # 7 Polarization: -120.45 SS G_CDS: -5.48 Total: -125.94 kcal Atomic # 8 Polarization: -28.83 SS G_CDS: -1.96 Total: -30.79 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Total: -75.15 0.13 -75.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156025753.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.597 kcal (2) G-P(sol) polarization free energy of solvation -75.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.025 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds