Wall clock time and date at job start Wed Apr 1 2020 02:43:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86793 * 119.99856 * 2 1 4 4 H 1.48499 * 109.47576 * 240.00135 * 3 2 1 5 5 H 1.48503 * 109.47337 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47326 * 120.00166 * 3 2 1 7 7 C 1.37877 * 120.00098 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99975 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99892 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47051 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.47119 * 179.97438 * 10 9 7 12 12 N 1.46495 * 109.46964 * 180.02562 * 11 10 9 13 13 C 1.34780 * 119.99793 * 179.97438 * 12 11 10 14 14 O 1.21577 * 120.00257 * 0.02562 * 13 12 11 15 15 N 1.34785 * 119.99666 * 179.97438 * 13 12 11 16 16 N 1.40096 * 120.00167 * 0.02562 * 15 13 12 17 17 C 1.34775 * 119.99785 * 180.02562 * 16 15 13 18 18 O 1.21278 * 120.00033 * 359.97438 * 17 16 15 19 19 C 1.50702 * 119.99880 * 179.97438 * 17 16 15 20 20 N 1.46500 * 109.47226 * 179.97438 * 19 17 16 21 21 C 1.36831 * 125.06347 * 265.30227 * 20 19 17 22 22 C 1.34242 * 109.92830 * 180.14700 * 21 20 19 23 23 C 1.46491 * 106.99712 * 359.60332 * 22 21 20 24 24 C 1.39630 * 134.02857 * 180.21673 * 23 22 21 25 25 C 1.36627 * 119.76400 * 179.97438 * 24 23 22 26 26 C 1.38830 * 120.52420 * 0.03970 * 25 24 23 27 27 C 1.37746 * 120.67032 * 359.97438 * 26 25 24 28 28 C 1.37685 * 125.06129 * 85.00005 * 20 19 17 29 29 H 0.96995 * 120.00158 * 359.97438 * 1 2 3 30 30 H 1.08994 * 109.47652 * 59.99602 * 9 7 2 31 31 H 1.09003 * 109.47006 * 299.99697 * 9 7 2 32 32 H 1.09007 * 109.47005 * 59.99728 * 10 9 7 33 33 H 1.09003 * 109.47041 * 299.99765 * 10 9 7 34 34 H 1.08994 * 109.47407 * 59.99799 * 11 10 9 35 35 H 1.09003 * 109.47183 * 299.99936 * 11 10 9 36 36 H 0.97006 * 120.00471 * 359.97438 * 12 11 10 37 37 H 0.96999 * 119.99582 * 180.02562 * 15 13 12 38 38 H 0.96999 * 120.00252 * 0.02562 * 16 15 13 39 39 H 1.09008 * 109.47109 * 60.00030 * 19 17 16 40 40 H 1.08998 * 109.47260 * 299.99591 * 19 17 16 41 41 H 1.07993 * 125.03787 * 0.02931 * 21 20 19 42 42 H 1.08002 * 126.50514 * 179.87275 * 22 21 20 43 43 H 1.07993 * 120.11544 * 0.02562 * 24 23 22 44 44 H 1.07994 * 119.73661 * 180.02562 * 25 24 23 45 45 H 1.08005 * 119.66510 * 180.02562 * 26 25 24 46 46 H 1.08006 * 120.11165 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 6 2.2453 -3.6620 -0.0027 11 6 1.4803 -4.9871 -0.0033 12 7 2.4323 -6.1005 -0.0037 13 6 1.9830 -7.3713 -0.0036 14 8 0.7877 -7.5935 -0.0038 15 7 2.8590 -8.3957 -0.0045 16 7 4.2363 -8.1396 -0.0049 17 6 5.1121 -9.1640 -0.0063 18 8 4.7079 -10.3075 -0.0067 19 6 6.5938 -8.8886 -0.0073 20 7 7.3263 -10.1573 -0.0081 21 6 7.7996 -10.7925 1.1076 22 6 8.4253 -11.9274 0.7573 23 6 8.3378 -12.0319 -0.7012 24 6 8.7841 -12.9687 -1.6355 25 6 8.5355 -12.7726 -2.9646 26 6 7.8430 -11.6485 -3.3940 27 6 7.3939 -10.7117 -2.4895 28 6 7.6359 -10.8911 -1.1312 29 1 -0.4850 0.8400 0.0004 30 1 0.6247 -2.5563 -0.8919 31 1 0.6241 -2.5575 0.8881 32 1 2.8720 -3.6050 0.8873 33 1 2.8719 -3.6035 -0.8927 34 1 0.8533 -5.0443 -0.8930 35 1 0.8539 -5.0454 0.8869 36 1 3.3860 -5.9233 -0.0039 37 1 2.5356 -9.3102 -0.0049 38 1 4.5597 -7.2251 -0.0042 39 1 6.8578 -8.3176 0.8830 40 1 6.8564 -8.3165 -0.8971 41 1 7.6882 -10.4331 2.1199 42 1 8.8991 -12.6321 1.4246 43 1 9.3232 -13.8455 -1.3087 44 1 8.8805 -13.4976 -3.6868 45 1 7.6537 -11.5076 -4.4480 46 1 6.8565 -9.8404 -2.8336 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000170923893.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:43:12 Heat of formation + Delta-G solvation = 8.007188 kcal Electronic energy + Delta-G solvation = -28041.348773 eV Core-core repulsion = 23932.046257 eV Total energy + Delta-G solvation = -4109.302516 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.39284 -41.60129 -40.34740 -37.89911 -37.06957 -36.92988 -35.16160 -34.08428 -33.03392 -32.27649 -31.10738 -29.75733 -28.55557 -27.70001 -25.13116 -23.71598 -22.93430 -22.47021 -22.30245 -22.19623 -21.09588 -20.12047 -19.11002 -18.46304 -18.07605 -17.44501 -17.41946 -17.11112 -16.65099 -16.41504 -16.33931 -16.26487 -15.72807 -15.61287 -15.44091 -14.90043 -14.78922 -14.52783 -14.24352 -13.98687 -13.73770 -13.64816 -13.51431 -13.16495 -12.73038 -12.57736 -12.55077 -12.52870 -12.47253 -12.40092 -12.00269 -11.74009 -11.64603 -11.45939 -11.34778 -11.17706 -10.56914 -10.51818 -10.35401 -9.49827 -9.08519 -8.58068 -8.16672 -6.27812 0.22313 0.50122 0.80767 1.20765 1.44390 1.46631 1.54374 1.69968 1.87735 1.90866 1.97949 2.44348 2.99390 3.17325 3.17627 3.73035 3.78870 3.89350 4.00269 4.13059 4.14578 4.18702 4.25167 4.30630 4.57054 4.57364 4.60277 4.80422 4.91357 4.94872 4.97859 5.08007 5.16419 5.19122 5.20208 5.33054 5.47564 5.56283 5.58055 5.72242 5.74731 5.85819 5.87597 5.87682 6.10261 6.24727 6.30658 6.37837 6.53250 6.90254 7.09765 7.27559 7.41906 8.94967 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.015854 B = 0.001679 C = 0.001607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1765.655604 B =16676.996634 C =17417.296694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.004 4.004 3 Si 0.965 3.035 4 H -0.265 1.265 5 H -0.290 1.290 6 H -0.265 1.265 7 C -0.539 4.539 8 H 0.070 0.930 9 C 0.021 3.979 10 C -0.100 4.100 11 C 0.145 3.855 12 N -0.720 5.720 13 C 0.711 3.289 14 O -0.618 6.618 15 N -0.532 5.532 16 N -0.509 5.509 17 C 0.495 3.505 18 O -0.563 6.563 19 C 0.103 3.897 20 N -0.474 5.474 21 C 0.060 3.940 22 C -0.224 4.224 23 C -0.136 4.136 24 C -0.089 4.089 25 C -0.155 4.155 26 C -0.111 4.111 27 C -0.140 4.140 28 C 0.084 3.916 29 H 0.262 0.738 30 H -0.008 1.008 31 H -0.008 1.008 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.051 0.949 35 H 0.052 0.948 36 H 0.410 0.590 37 H 0.438 0.562 38 H 0.439 0.561 39 H 0.175 0.825 40 H 0.152 0.848 41 H 0.201 0.799 42 H 0.160 0.840 43 H 0.134 0.866 44 H 0.140 0.860 45 H 0.142 0.858 46 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.657 -22.289 -0.830 32.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.202 4.202 3 Si 0.790 3.210 4 H -0.190 1.190 5 H -0.216 1.216 6 H -0.190 1.190 7 C -0.577 4.577 8 H 0.088 0.912 9 C -0.017 4.017 10 C -0.138 4.138 11 C 0.021 3.979 12 N -0.377 5.377 13 C 0.410 3.590 14 O -0.495 6.495 15 N -0.287 5.287 16 N -0.264 5.264 17 C 0.281 3.719 18 O -0.439 6.439 19 C -0.024 4.024 20 N -0.157 5.157 21 C -0.064 4.064 22 C -0.248 4.248 23 C -0.141 4.141 24 C -0.107 4.107 25 C -0.174 4.174 26 C -0.130 4.130 27 C -0.161 4.161 28 C -0.021 4.021 29 H 0.070 0.930 30 H 0.010 0.990 31 H 0.011 0.989 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.247 0.753 37 H 0.283 0.717 38 H 0.284 0.716 39 H 0.192 0.808 40 H 0.170 0.830 41 H 0.218 0.782 42 H 0.178 0.822 43 H 0.152 0.848 44 H 0.158 0.842 45 H 0.160 0.840 46 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 22.204 -22.658 -0.791 31.734 hybrid contribution -0.117 0.910 -0.024 0.918 sum 22.087 -21.748 -0.814 31.008 Atomic orbital electron populations 1.70104 1.07954 1.27736 1.51745 1.26011 0.95692 1.03523 0.94955 0.85500 0.78169 0.78079 0.79273 1.18995 1.21620 1.18971 1.21664 0.93865 0.91869 1.50275 0.91164 1.18960 0.94569 0.93010 0.95157 1.21604 0.98454 0.91150 1.02618 1.21228 0.91318 0.84304 1.01099 1.44975 1.10929 1.03211 1.78635 1.15801 0.83897 0.81121 0.78135 1.91015 1.14695 1.83386 1.60421 1.44454 0.94072 1.09316 1.80886 1.44870 0.93779 1.11207 1.76495 1.22025 0.89634 0.84225 0.76005 1.90828 1.80030 1.22698 1.50301 1.21848 0.83944 0.85434 1.11128 1.43511 1.47372 1.20038 1.04816 1.22365 0.97948 0.94032 0.92014 1.21993 1.09591 1.00589 0.92642 1.19661 1.03369 0.96172 0.94900 1.20567 0.99317 0.98287 0.92549 1.20942 1.01558 0.99021 0.95861 1.21138 0.97955 0.93965 0.99952 1.20275 1.04350 1.01942 0.89511 1.18472 1.01022 0.93558 0.89048 0.92964 0.98982 0.98934 0.90764 0.90829 0.93012 0.92950 0.75274 0.71668 0.71585 0.80813 0.83007 0.78207 0.82225 0.84833 0.84173 0.84006 0.85441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.49 13.29 21.45 0.28 -55.20 16 2 C 0.00 -0.23 5.46 84.65 0.46 0.23 16 3 Si 0.97 41.95 29.54 68.60 2.03 43.97 16 4 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 5 H -0.29 -12.68 7.11 99.48 0.71 -11.97 16 6 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 7 C -0.54 -28.29 9.11 25.60 0.23 -28.05 16 8 H 0.07 3.39 7.74 -2.91 -0.02 3.37 16 9 C 0.02 1.01 4.97 29.85 0.15 1.16 16 10 C -0.10 -3.35 5.27 30.60 0.16 -3.19 16 11 C 0.14 4.50 5.67 86.38 0.49 4.99 16 12 N -0.72 -16.33 5.52 -478.54 -2.64 -18.97 16 13 C 0.71 19.17 8.68 179.05 1.55 20.72 16 14 O -0.62 -23.12 17.18 -3.96 -0.07 -23.18 16 15 N -0.53 -10.91 6.26 -184.74 -1.16 -12.07 16 16 N -0.51 -5.88 6.26 -173.53 -1.09 -6.96 16 17 C 0.50 6.70 8.02 87.66 0.70 7.40 16 18 O -0.56 -13.83 16.26 -3.02 -0.05 -13.88 16 19 C 0.10 0.57 6.48 85.63 0.55 1.12 16 20 N -0.47 -6.52 2.27 -519.98 -1.18 -7.70 16 21 C 0.06 0.76 11.27 83.00 0.94 1.70 16 22 C -0.22 -3.61 11.08 23.51 0.26 -3.35 16 23 C -0.14 -2.74 6.37 -20.20 -0.13 -2.86 16 24 C -0.09 -1.57 10.05 22.23 0.22 -1.35 16 25 C -0.15 -2.46 9.97 22.03 0.22 -2.25 16 26 C -0.11 -1.79 10.01 22.30 0.22 -1.56 16 27 C -0.14 -2.46 10.00 22.37 0.22 -2.24 16 28 C 0.08 1.61 6.80 39.03 0.27 1.87 16 29 H 0.26 14.74 8.31 -92.71 -0.77 13.96 16 30 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 31 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 32 H 0.07 2.22 8.14 -2.38 -0.02 2.20 16 33 H 0.07 2.21 8.14 -2.39 -0.02 2.20 16 34 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 35 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 36 H 0.41 5.62 6.39 -92.70 -0.59 5.03 16 37 H 0.44 10.08 8.10 -213.32 -1.73 8.35 16 38 H 0.44 1.77 6.70 -213.32 -1.43 0.34 16 39 H 0.17 -0.57 8.12 -2.38 -0.02 -0.59 16 40 H 0.15 0.03 8.14 -2.39 -0.02 0.01 16 41 H 0.20 1.01 8.06 -2.91 -0.02 0.99 16 42 H 0.16 1.91 8.06 -2.91 -0.02 1.89 16 43 H 0.13 1.81 8.06 -2.91 -0.02 1.79 16 44 H 0.14 1.53 8.06 -2.91 -0.02 1.50 16 45 H 0.14 1.61 8.06 -2.91 -0.02 1.58 16 46 H 0.13 1.75 8.06 -2.91 -0.02 1.73 16 Total: -1.00 -84.96 397.81 -0.06 -85.02 By element: Atomic # 1 Polarization: 17.32 SS G_CDS: -2.72 Total: 14.60 kcal Atomic # 6 Polarization: -12.17 SS G_CDS: 6.53 Total: -5.64 kcal Atomic # 7 Polarization: -95.12 SS G_CDS: -5.78 Total: -100.90 kcal Atomic # 8 Polarization: -36.94 SS G_CDS: -0.12 Total: -37.06 kcal Atomic # 14 Polarization: 41.95 SS G_CDS: 2.03 Total: 43.97 kcal Total: -84.96 -0.06 -85.02 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170923893.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.028 kcal (2) G-P(sol) polarization free energy of solvation -84.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.021 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds