Wall clock time and date at job start Wed Apr 1 2020 02:12:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42896 * 114.00240 * 2 1 4 4 C 1.53001 * 109.46980 * 179.97438 * 3 2 1 5 5 N 1.46508 * 109.46483 * 65.00456 * 4 3 2 6 6 C 1.34777 * 119.99388 * 179.97438 * 5 4 3 7 7 O 1.21627 * 120.00581 * 0.27579 * 6 5 4 8 8 C 1.47258 * 119.99770 * 179.97438 * 6 5 4 9 9 C 1.43199 * 119.99965 * 0.02562 * 8 6 5 10 10 N 5.27398 * 119.21485 * 257.98201 * 2 1 3 11 11 C 1.36584 * 119.99929 * 179.97438 * 8 6 5 12 12 C 1.46739 * 119.99845 * 173.19631 * 11 8 6 13 13 C 1.40101 * 120.16657 * 330.10836 * 12 11 8 14 14 C 1.37836 * 119.91403 * 179.71758 * 13 12 11 15 15 C 1.38373 * 120.25363 * 0.55980 * 14 13 12 16 16 C 1.38904 * 120.33850 * 359.71721 * 15 14 13 17 17 O 1.35907 * 119.96069 * 179.97438 * 16 15 14 18 18 C 1.42906 * 117.00062 * 0.02562 * 17 16 15 19 19 C 1.52994 * 109.46979 * 180.02562 * 18 17 16 20 20 C 1.50700 * 109.47035 * 180.02562 * 19 18 17 21 21 H 1.07996 * 120.00192 * 0.02562 * 20 19 18 22 22 C 1.37878 * 120.00143 * 180.02562 * 20 19 18 23 23 N 1.31515 * 119.99959 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00067 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47248 * 359.97438 * 24 22 20 26 26 H 1.48507 * 109.46840 * 119.99931 * 24 22 20 27 27 H 1.48503 * 109.47124 * 239.99540 * 24 22 20 28 28 C 1.38358 * 120.07451 * 359.97438 * 16 15 14 29 29 H 1.08999 * 109.47026 * 300.00022 * 1 2 3 30 30 H 1.09002 * 109.47086 * 59.99370 * 1 2 3 31 31 H 1.08997 * 109.47397 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46876 * 60.00296 * 3 2 1 33 33 H 1.08998 * 109.47287 * 300.00006 * 3 2 1 34 34 H 1.08994 * 109.47312 * 305.00622 * 4 3 2 35 35 H 1.09002 * 109.47263 * 184.99733 * 4 3 2 36 36 H 0.96991 * 120.00158 * 359.97438 * 5 4 3 37 37 H 1.07997 * 120.00559 * 353.19992 * 11 8 6 38 38 H 1.07994 * 120.03903 * 0.02562 * 13 12 11 39 39 H 1.07996 * 119.86811 * 180.27733 * 14 13 12 40 40 H 1.07999 * 119.82993 * 179.70162 * 15 14 13 41 41 H 1.09002 * 109.46901 * 300.00635 * 18 17 16 42 42 H 1.08998 * 109.47059 * 60.00507 * 18 17 16 43 43 H 1.09002 * 109.47414 * 299.99820 * 19 18 17 44 44 H 1.08998 * 109.47220 * 60.00104 * 19 18 17 45 45 H 0.96998 * 119.99922 * 180.02562 * 23 22 20 46 46 H 1.08006 * 120.12426 * 179.97438 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 7 3.9765 0.5638 -1.2510 6 6 5.2894 0.3558 -1.4739 7 8 6.1076 0.6787 -0.6339 8 6 5.7327 -0.2686 -2.7317 9 6 4.7691 -0.6541 -3.7182 10 7 4.0031 -0.9585 -4.5022 11 6 7.0632 -0.4789 -2.9578 12 6 7.4963 -1.2335 -4.1395 13 6 6.6747 -2.2332 -4.6765 14 6 7.0840 -2.9348 -5.7901 15 6 8.3091 -2.6636 -6.3735 16 6 9.1346 -1.6786 -5.8464 17 8 10.3365 -1.4189 -6.4253 18 6 10.6856 -2.1965 -7.5723 19 6 12.0626 -1.7652 -8.0808 20 6 12.4306 -2.5848 -9.2908 21 1 11.7502 -3.3376 -9.6604 22 6 13.6359 -2.3734 -9.9260 23 7 14.4643 -1.4563 -9.4763 24 14 14.0923 -3.3898 -11.4254 25 1 12.9978 -4.3472 -11.7263 26 1 14.2979 -2.4904 -12.5891 27 1 15.3445 -4.1401 -11.1524 28 6 8.7346 -0.9616 -4.7328 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 1.6887 1.8463 0.8900 33 1 1.6887 1.8463 -0.8900 34 1 3.8508 0.5683 0.8426 35 1 3.9786 2.1763 0.0902 36 1 3.3238 0.3027 -1.9192 37 1 7.7966 -0.0900 -2.2669 38 1 5.7197 -2.4504 -4.2214 39 1 6.4481 -3.7022 -6.2061 40 1 8.6251 -3.2208 -7.2430 41 1 10.7129 -3.2519 -7.3011 42 1 9.9438 -2.0417 -8.3557 43 1 12.0357 -0.7098 -8.3519 44 1 12.8043 -1.9203 -7.2973 45 1 15.3121 -1.3074 -9.9235 46 1 9.3760 -0.1958 -4.3220 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171148397.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:12:49 Heat of formation + Delta-G solvation = -52.592173 kcal Electronic energy + Delta-G solvation = -27459.720617 eV Core-core repulsion = 23315.497565 eV Total energy + Delta-G solvation = -4144.223053 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.46864 -39.87865 -38.53462 -37.90859 -36.65699 -35.22964 -34.01873 -33.40952 -31.25425 -30.81850 -29.84588 -29.10506 -26.90481 -25.57517 -24.70841 -23.16389 -22.73216 -21.73755 -21.55398 -20.51868 -19.06364 -17.73067 -17.26239 -16.93560 -16.45891 -16.26349 -15.89997 -15.71901 -15.54343 -15.53076 -15.44252 -15.02166 -14.56797 -14.50489 -14.25238 -13.72018 -13.61986 -13.31473 -13.22979 -13.13344 -12.90225 -12.75146 -12.59697 -12.36092 -12.32888 -11.81267 -11.70165 -11.63426 -11.42214 -10.98114 -10.82430 -10.59774 -10.52540 -10.31113 -10.24496 -9.94668 -9.72587 -9.56316 -9.34166 -8.70401 -8.49505 -8.06990 -6.14738 -4.19713 -0.06774 1.40601 1.55285 2.29993 2.33415 2.68491 3.13323 3.23849 3.24862 3.31034 3.34224 3.53388 3.63407 3.73620 4.20004 4.31602 4.38252 4.52205 4.64563 4.69651 4.79773 4.82569 4.84292 4.95913 5.06444 5.09005 5.17405 5.19414 5.22037 5.31891 5.36651 5.48155 5.62127 5.90235 5.90556 5.91931 5.93369 6.18876 6.35052 6.36161 6.49695 6.58201 6.66786 6.99005 7.14682 7.42205 7.57509 7.72135 7.73881 7.93755 8.17957 8.85960 9.45138 10.96768 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.031770 B = 0.001514 C = 0.001463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.126640 B =18484.691720 C =19128.031200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.390 6.390 3 C 0.045 3.955 4 C 0.123 3.877 5 N -0.722 5.722 6 C 0.578 3.422 7 O -0.530 6.530 8 C -0.141 4.141 9 C 0.251 3.749 10 N -0.410 5.410 11 C 0.088 3.912 12 C -0.077 4.077 13 C -0.140 4.140 14 C -0.081 4.081 15 C -0.184 4.184 16 C 0.141 3.859 17 O -0.312 6.312 18 C 0.063 3.937 19 C 0.025 3.975 20 C -0.528 4.528 21 H 0.059 0.941 22 C 0.061 3.939 23 N -0.888 5.888 24 Si 0.899 3.101 25 H -0.272 1.272 26 H -0.282 1.282 27 H -0.282 1.282 28 C -0.119 4.119 29 H 0.043 0.957 30 H 0.042 0.958 31 H 0.088 0.912 32 H 0.070 0.930 33 H 0.058 0.942 34 H 0.082 0.918 35 H 0.089 0.911 36 H 0.404 0.596 37 H 0.167 0.833 38 H 0.123 0.877 39 H 0.127 0.873 40 H 0.136 0.864 41 H 0.053 0.947 42 H 0.052 0.948 43 H 0.028 0.972 44 H 0.029 0.971 45 H 0.263 0.737 46 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.003 4.480 19.789 32.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.308 6.308 3 C -0.032 4.032 4 C -0.001 4.001 5 N -0.374 5.374 6 C 0.365 3.635 7 O -0.408 6.408 8 C -0.148 4.148 9 C -0.063 4.063 10 N -0.086 5.086 11 C 0.064 3.936 12 C -0.078 4.078 13 C -0.159 4.159 14 C -0.099 4.099 15 C -0.203 4.203 16 C 0.094 3.906 17 O -0.225 6.225 18 C -0.010 4.010 19 C -0.012 4.012 20 C -0.566 4.566 21 H 0.077 0.923 22 C -0.141 4.141 23 N -0.526 5.526 24 Si 0.726 3.274 25 H -0.196 1.196 26 H -0.208 1.208 27 H -0.208 1.208 28 C -0.138 4.138 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.106 0.894 32 H 0.088 0.912 33 H 0.076 0.924 34 H 0.100 0.900 35 H 0.107 0.893 36 H 0.238 0.762 37 H 0.184 0.816 38 H 0.141 0.859 39 H 0.145 0.855 40 H 0.154 0.846 41 H 0.071 0.929 42 H 0.070 0.930 43 H 0.047 0.953 44 H 0.047 0.953 45 H 0.073 0.927 46 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -26.202 4.328 19.236 32.792 hybrid contribution -0.079 -0.519 -1.088 1.208 sum -26.281 3.809 18.148 32.164 Atomic orbital electron populations 1.22781 0.80527 1.03151 1.00127 1.87940 1.20126 1.27320 1.95463 1.22849 0.93054 0.85625 1.01645 1.21444 0.91966 0.99532 0.87134 1.45778 1.07367 1.63247 1.20999 1.17526 0.82411 0.78095 0.85480 1.90852 1.52710 1.51731 1.45499 1.17900 0.90793 1.12037 0.94034 1.25493 0.93420 0.93671 0.93719 1.81376 1.09765 1.08866 1.08614 1.23010 0.94056 0.84439 0.92054 1.18659 0.94977 0.98191 0.95945 1.21397 0.99272 0.97696 0.97505 1.20842 0.95446 0.98768 0.94888 1.21682 0.95788 1.00117 1.02670 1.19047 0.86233 0.92958 0.92392 1.86209 1.30907 1.60511 1.44851 1.23403 1.00651 0.93759 0.83234 1.19135 0.87911 0.98041 0.96117 1.20996 1.03326 1.20241 1.12067 0.92301 1.24983 0.96183 0.95319 0.97619 1.69980 1.09827 1.32349 1.40469 0.86435 0.78513 0.80052 0.82412 1.19640 1.20812 1.20800 1.20619 0.95626 1.01579 0.96006 0.93836 0.93899 0.89371 0.91201 0.92394 0.89985 0.89300 0.76161 0.81609 0.85884 0.85507 0.84587 0.92918 0.92975 0.95320 0.95277 0.92706 0.84095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.13 11.01 101.05 1.11 1.24 16 2 O -0.39 -2.64 10.65 -35.23 -0.38 -3.02 16 3 C 0.05 0.21 6.07 37.16 0.23 0.43 16 4 C 0.12 0.74 6.06 -4.04 -0.02 0.72 16 5 N -0.72 -5.57 5.46 -61.43 -0.34 -5.91 16 6 C 0.58 5.56 7.75 -12.59 -0.10 5.46 16 7 O -0.53 -6.37 16.29 5.25 0.09 -6.29 16 8 C -0.14 -1.32 5.81 -104.90 -0.61 -1.93 16 9 C 0.25 2.64 10.46 -22.42 -0.23 2.40 16 10 N -0.41 -4.97 17.92 41.90 0.75 -4.22 16 11 C 0.09 0.81 9.42 -36.75 -0.35 0.47 16 12 C -0.08 -0.89 5.57 -105.11 -0.59 -1.48 16 13 C -0.14 -1.68 8.30 -39.03 -0.32 -2.00 16 14 C -0.08 -1.02 10.02 -39.68 -0.40 -1.41 16 15 C -0.18 -2.64 9.04 -39.29 -0.36 -2.99 16 16 C 0.14 2.23 6.68 -39.29 -0.26 1.97 16 17 O -0.31 -5.96 10.13 -19.45 -0.20 -6.16 16 18 C 0.06 1.29 4.68 37.15 0.17 1.46 16 19 C 0.03 0.64 5.34 -27.89 -0.15 0.49 16 20 C -0.53 -14.40 9.11 -34.44 -0.31 -14.71 16 21 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 22 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 23 N -0.89 -25.99 13.29 55.43 0.74 -25.26 16 24 Si 0.90 20.95 29.54 -169.99 -5.02 15.93 16 25 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 26 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 27 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 28 C -0.12 -1.58 9.74 -38.89 -0.38 -1.95 16 29 H 0.04 0.13 8.14 -51.93 -0.42 -0.29 16 30 H 0.04 0.15 8.14 -51.93 -0.42 -0.27 16 31 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.07 0.20 8.14 -51.93 -0.42 -0.22 16 33 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 34 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.40 2.91 7.35 -40.82 -0.30 2.61 16 37 H 0.17 1.25 7.59 -52.49 -0.40 0.85 16 38 H 0.12 1.39 5.38 -52.49 -0.28 1.11 16 39 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16 40 H 0.14 1.91 6.27 -52.49 -0.33 1.58 16 41 H 0.05 1.01 7.65 -51.93 -0.40 0.61 16 42 H 0.05 1.01 7.66 -51.93 -0.40 0.61 16 43 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 46 H 0.14 1.62 8.06 -52.48 -0.42 1.20 16 LS Contribution 402.45 15.07 6.06 6.06 Total: -1.00 -32.57 402.45 -7.25 -39.82 By element: Atomic # 1 Polarization: 5.57 SS G_CDS: -6.30 Total: -0.73 kcal Atomic # 6 Polarization: -7.57 SS G_CDS: -2.66 Total: -10.24 kcal Atomic # 7 Polarization: -36.54 SS G_CDS: 1.15 Total: -35.39 kcal Atomic # 8 Polarization: -14.98 SS G_CDS: -0.49 Total: -15.46 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -32.57 -7.25 -39.82 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171148397.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.776 kcal (2) G-P(sol) polarization free energy of solvation -32.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds