Wall clock time and date at job start Wed Apr 1 2020 02:12:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42896 * 114.00240 * 2 1 4 4 C 1.53001 * 109.46980 * 179.97438 * 3 2 1 5 5 N 1.46508 * 109.46483 * 65.00456 * 4 3 2 6 6 C 1.34777 * 119.99388 * 179.97438 * 5 4 3 7 7 O 1.21627 * 120.00581 * 0.27579 * 6 5 4 8 8 C 1.47258 * 119.99770 * 179.97438 * 6 5 4 9 9 C 1.43199 * 119.99965 * 0.02562 * 8 6 5 10 10 N 5.27398 * 119.21485 * 257.98201 * 2 1 3 11 11 C 1.36584 * 119.99929 * 179.97438 * 8 6 5 12 12 C 1.46739 * 119.99845 * 173.19631 * 11 8 6 13 13 C 1.40101 * 120.16657 * 330.10836 * 12 11 8 14 14 C 1.37836 * 119.91403 * 179.71758 * 13 12 11 15 15 C 1.38373 * 120.25363 * 0.55980 * 14 13 12 16 16 C 1.38904 * 120.33850 * 359.71721 * 15 14 13 17 17 O 1.35907 * 119.96069 * 179.97438 * 16 15 14 18 18 C 1.42906 * 117.00062 * 0.02562 * 17 16 15 19 19 C 1.52994 * 109.46979 * 180.02562 * 18 17 16 20 20 C 1.50700 * 109.47035 * 180.02562 * 19 18 17 21 21 H 1.07996 * 120.00192 * 0.02562 * 20 19 18 22 22 C 1.37878 * 120.00143 * 180.02562 * 20 19 18 23 23 N 1.31515 * 119.99959 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00067 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47248 * 359.97438 * 24 22 20 26 26 H 1.48507 * 109.46840 * 119.99931 * 24 22 20 27 27 H 1.48503 * 109.47124 * 239.99540 * 24 22 20 28 28 C 1.38358 * 120.07451 * 359.97438 * 16 15 14 29 29 H 1.08999 * 109.47026 * 300.00022 * 1 2 3 30 30 H 1.09002 * 109.47086 * 59.99370 * 1 2 3 31 31 H 1.08997 * 109.47397 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46876 * 60.00296 * 3 2 1 33 33 H 1.08998 * 109.47287 * 300.00006 * 3 2 1 34 34 H 1.08994 * 109.47312 * 305.00622 * 4 3 2 35 35 H 1.09002 * 109.47263 * 184.99733 * 4 3 2 36 36 H 0.96991 * 120.00158 * 359.97438 * 5 4 3 37 37 H 1.07997 * 120.00559 * 353.19992 * 11 8 6 38 38 H 1.07994 * 120.03903 * 0.02562 * 13 12 11 39 39 H 1.07996 * 119.86811 * 180.27733 * 14 13 12 40 40 H 1.07999 * 119.82993 * 179.70162 * 15 14 13 41 41 H 1.09002 * 109.46901 * 300.00635 * 18 17 16 42 42 H 1.08998 * 109.47059 * 60.00507 * 18 17 16 43 43 H 1.09002 * 109.47414 * 299.99820 * 19 18 17 44 44 H 1.08998 * 109.47220 * 60.00104 * 19 18 17 45 45 H 0.96998 * 119.99922 * 180.02562 * 23 22 20 46 46 H 1.08006 * 120.12426 * 179.97438 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 7 3.9765 0.5638 -1.2510 6 6 5.2894 0.3558 -1.4739 7 8 6.1076 0.6787 -0.6339 8 6 5.7327 -0.2686 -2.7317 9 6 4.7691 -0.6541 -3.7182 10 7 4.0031 -0.9585 -4.5022 11 6 7.0632 -0.4789 -2.9578 12 6 7.4963 -1.2335 -4.1395 13 6 6.6747 -2.2332 -4.6765 14 6 7.0840 -2.9348 -5.7901 15 6 8.3091 -2.6636 -6.3735 16 6 9.1346 -1.6786 -5.8464 17 8 10.3365 -1.4189 -6.4253 18 6 10.6856 -2.1965 -7.5723 19 6 12.0626 -1.7652 -8.0808 20 6 12.4306 -2.5848 -9.2908 21 1 11.7502 -3.3376 -9.6604 22 6 13.6359 -2.3734 -9.9260 23 7 14.4643 -1.4563 -9.4763 24 14 14.0923 -3.3898 -11.4254 25 1 12.9978 -4.3472 -11.7263 26 1 14.2979 -2.4904 -12.5891 27 1 15.3445 -4.1401 -11.1524 28 6 8.7346 -0.9616 -4.7328 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 1.6887 1.8463 0.8900 33 1 1.6887 1.8463 -0.8900 34 1 3.8508 0.5683 0.8426 35 1 3.9786 2.1763 0.0902 36 1 3.3238 0.3027 -1.9192 37 1 7.7966 -0.0900 -2.2669 38 1 5.7197 -2.4504 -4.2214 39 1 6.4481 -3.7022 -6.2061 40 1 8.6251 -3.2208 -7.2430 41 1 10.7129 -3.2519 -7.3011 42 1 9.9438 -2.0417 -8.3557 43 1 12.0357 -0.7098 -8.3519 44 1 12.8043 -1.9203 -7.2973 45 1 15.3121 -1.3074 -9.9235 46 1 9.3760 -0.1958 -4.3220 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171148397.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:12:48 Heat of formation + Delta-G solvation = -73.241289 kcal Electronic energy + Delta-G solvation = -27460.616030 eV Core-core repulsion = 23315.497565 eV Total energy + Delta-G solvation = -4145.118466 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.37840 -40.89009 -39.19147 -38.81778 -37.66518 -35.88052 -35.49021 -34.86099 -32.66532 -31.83564 -30.91406 -30.12338 -27.32825 -27.08870 -25.86846 -23.88931 -23.80141 -23.05371 -22.37197 -21.81200 -19.96748 -18.97418 -18.16895 -17.71590 -17.50609 -17.22025 -17.14548 -16.97005 -16.58779 -16.26957 -16.24212 -16.13365 -15.83967 -15.36459 -14.96406 -14.58184 -14.55309 -14.51550 -14.36301 -14.28354 -14.06098 -13.88302 -13.59981 -13.25279 -13.11720 -13.07731 -12.72686 -12.69926 -12.57251 -12.50691 -12.17269 -12.06132 -11.71704 -11.58299 -11.37949 -11.30864 -11.09854 -10.67121 -10.62132 -10.22983 -9.66081 -9.23436 -8.26385 -6.39584 -0.93195 0.35476 0.57646 1.41787 1.41987 1.45477 1.52360 1.55330 1.99719 2.23418 2.39339 2.47276 2.71497 2.73454 2.79512 3.08637 3.37367 3.74531 3.85402 3.94890 3.99582 4.03606 4.17753 4.22637 4.27532 4.28758 4.41370 4.41941 4.51811 4.57124 4.64058 4.67686 4.69985 4.74399 4.87742 4.89015 4.93676 5.16249 5.29490 5.32137 5.34322 5.35125 5.48681 5.59125 5.74142 6.07423 6.16622 6.28949 6.32172 6.46982 6.75616 7.01935 7.30738 8.86716 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.031770 B = 0.001514 C = 0.001463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.126640 B =18484.691720 C =19128.031200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.417 6.417 3 C 0.047 3.953 4 C 0.119 3.881 5 N -0.715 5.715 6 C 0.580 3.420 7 O -0.555 6.555 8 C -0.131 4.131 9 C 0.264 3.736 10 N -0.434 5.434 11 C 0.095 3.905 12 C -0.069 4.069 13 C -0.138 4.138 14 C -0.081 4.081 15 C -0.192 4.192 16 C 0.108 3.892 17 O -0.334 6.334 18 C 0.082 3.918 19 C 0.027 3.973 20 C -0.546 4.546 21 H 0.070 0.930 22 C 0.004 3.996 23 N -0.930 5.930 24 Si 0.973 3.027 25 H -0.258 1.258 26 H -0.278 1.278 27 H -0.277 1.277 28 C -0.120 4.120 29 H 0.055 0.945 30 H 0.049 0.951 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.068 0.932 34 H 0.073 0.927 35 H 0.099 0.901 36 H 0.407 0.593 37 H 0.187 0.813 38 H 0.133 0.867 39 H 0.149 0.851 40 H 0.136 0.864 41 H 0.063 0.937 42 H 0.061 0.939 43 H 0.000 1.000 44 H 0.001 0.999 45 H 0.266 0.734 46 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.007 3.974 20.204 34.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.337 6.337 3 C -0.029 4.029 4 C -0.004 4.004 5 N -0.366 5.366 6 C 0.367 3.633 7 O -0.435 6.435 8 C -0.138 4.138 9 C -0.049 4.049 10 N -0.111 5.111 11 C 0.072 3.928 12 C -0.070 4.070 13 C -0.157 4.157 14 C -0.099 4.099 15 C -0.211 4.211 16 C 0.062 3.938 17 O -0.248 6.248 18 C 0.008 3.992 19 C -0.010 4.010 20 C -0.584 4.584 21 H 0.089 0.911 22 C -0.195 4.195 23 N -0.569 5.569 24 Si 0.797 3.203 25 H -0.182 1.182 26 H -0.204 1.204 27 H -0.203 1.203 28 C -0.139 4.139 29 H 0.074 0.926 30 H 0.068 0.932 31 H 0.107 0.893 32 H 0.108 0.892 33 H 0.086 0.914 34 H 0.091 0.909 35 H 0.117 0.883 36 H 0.242 0.758 37 H 0.204 0.796 38 H 0.151 0.849 39 H 0.167 0.833 40 H 0.154 0.846 41 H 0.081 0.919 42 H 0.079 0.921 43 H 0.018 0.982 44 H 0.019 0.981 45 H 0.075 0.925 46 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -28.263 3.821 19.665 34.643 hybrid contribution 0.393 -0.302 -1.070 1.179 sum -27.871 3.519 18.595 33.689 Atomic orbital electron populations 1.22900 0.79420 1.03613 1.01060 1.87893 1.21474 1.28598 1.95692 1.22915 0.91779 0.85164 1.03084 1.21600 0.93243 0.99646 0.85916 1.45833 1.06792 1.62403 1.21565 1.17489 0.82801 0.77925 0.85111 1.90848 1.53414 1.53020 1.46209 1.17871 0.90514 1.11718 0.93714 1.25588 0.93019 0.92995 0.93340 1.81401 1.10498 1.09757 1.09459 1.23069 0.94403 0.83938 0.91387 1.18784 0.94081 0.97958 0.96152 1.21627 0.99542 0.97325 0.97198 1.21088 0.94902 0.99112 0.94795 1.21748 0.96413 0.99983 1.02950 1.19339 0.85647 0.94951 0.93818 1.86116 1.33122 1.60889 1.44675 1.22913 0.97865 0.94132 0.84280 1.18968 0.90442 0.96311 0.95269 1.21438 1.03794 1.20545 1.12610 0.91141 1.25989 0.96111 0.96449 1.00944 1.70117 1.10413 1.34140 1.42208 0.85280 0.78476 0.78448 0.78116 1.18183 1.20360 1.20303 1.20811 0.96374 1.01469 0.95222 0.92602 0.93246 0.89262 0.89209 0.91419 0.90910 0.88262 0.75806 0.79604 0.84889 0.83293 0.84627 0.91852 0.92075 0.98198 0.98066 0.92477 0.82793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 113.37 1.25 1.43 16 2 O -0.42 -5.06 10.65 -148.98 -1.59 -6.64 16 3 C 0.05 0.34 6.07 71.98 0.44 0.78 16 4 C 0.12 1.25 6.06 86.38 0.52 1.78 16 5 N -0.72 -9.93 5.46 -466.51 -2.54 -12.47 16 6 C 0.58 10.21 7.75 86.61 0.67 10.88 16 7 O -0.55 -12.52 16.29 -4.12 -0.07 -12.59 16 8 C -0.13 -2.21 5.81 -20.05 -0.12 -2.33 16 9 C 0.26 5.07 10.46 88.31 0.92 5.99 16 10 N -0.43 -9.84 17.92 19.02 0.34 -9.49 16 11 C 0.10 1.56 9.42 24.11 0.23 1.79 16 12 C -0.07 -1.48 5.57 -20.18 -0.11 -1.59 16 13 C -0.14 -3.05 8.30 22.63 0.19 -2.87 16 14 C -0.08 -1.89 10.02 22.21 0.22 -1.67 16 15 C -0.19 -5.38 9.04 22.46 0.20 -5.18 16 16 C 0.11 3.41 6.68 22.46 0.15 3.56 16 17 O -0.33 -13.08 10.13 -92.50 -0.94 -14.02 16 18 C 0.08 3.41 4.68 71.98 0.34 3.75 16 19 C 0.03 1.45 5.34 29.85 0.16 1.61 16 20 C -0.55 -30.17 9.11 25.60 0.23 -29.94 16 21 H 0.07 3.64 7.74 -2.91 -0.02 3.61 16 22 C 0.00 0.21 5.46 84.65 0.46 0.67 16 23 N -0.93 -55.72 13.29 21.45 0.28 -55.43 16 24 Si 0.97 42.93 29.54 68.60 2.03 44.95 16 25 H -0.26 -10.72 7.11 99.48 0.71 -10.01 16 26 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 27 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 28 C -0.12 -3.06 9.74 22.72 0.22 -2.84 16 29 H 0.06 0.24 8.14 -2.39 -0.02 0.22 16 30 H 0.05 0.27 8.14 -2.39 -0.02 0.25 16 31 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.09 0.30 8.14 -2.39 -0.02 0.28 16 33 H 0.07 0.36 8.14 -2.39 -0.02 0.34 16 34 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.41 5.23 7.35 -92.72 -0.68 4.54 16 37 H 0.19 2.36 7.59 -2.91 -0.02 2.34 16 38 H 0.13 2.70 5.38 -2.91 -0.02 2.68 16 39 H 0.15 2.75 8.06 -2.91 -0.02 2.73 16 40 H 0.14 3.73 6.27 -2.91 -0.02 3.71 16 41 H 0.06 2.45 7.65 -2.39 -0.02 2.43 16 42 H 0.06 2.38 7.66 -2.39 -0.02 2.37 16 43 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 44 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 45 H 0.27 14.90 8.31 -92.71 -0.77 14.13 16 46 H 0.15 3.41 8.06 -2.91 -0.02 3.39 16 Total: -1.00 -70.94 402.45 3.83 -67.11 By element: Atomic # 1 Polarization: 12.42 SS G_CDS: 0.33 Total: 12.75 kcal Atomic # 6 Polarization: -20.14 SS G_CDS: 5.98 Total: -14.16 kcal Atomic # 7 Polarization: -75.48 SS G_CDS: -1.92 Total: -77.40 kcal Atomic # 8 Polarization: -30.66 SS G_CDS: -2.59 Total: -33.26 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 2.03 Total: 44.95 kcal Total: -70.94 3.83 -67.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171148397.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.128 kcal (2) G-P(sol) polarization free energy of solvation -70.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds