Wall clock time and date at job start Wed Apr 1 2020 03:05:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86795 * 120.00193 * 2 1 4 4 H 1.48501 * 109.47470 * 239.99881 * 3 2 1 5 5 H 1.48505 * 109.47054 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.47251 * 119.99425 * 3 2 1 7 7 C 1.37885 * 119.99757 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99409 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00278 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47134 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47226 * 180.02562 * 10 9 7 12 12 N 1.46490 * 109.47285 * 180.02562 * 11 10 9 13 13 C 1.34773 * 120.00326 * 179.97438 * 12 11 10 14 14 O 1.21591 * 120.00000 * 359.97438 * 13 12 11 15 15 N 1.34777 * 120.00462 * 179.97438 * 13 12 11 16 16 C 1.46500 * 120.00376 * 180.02562 * 15 13 12 17 17 C 1.52997 * 109.47473 * 180.02562 * 16 15 13 18 18 C 1.50701 * 109.47212 * 179.97438 * 17 16 15 19 19 N 1.30381 * 126.18401 * 90.02317 * 18 17 16 20 20 N 1.28666 * 109.52796 * 179.97438 * 19 18 17 21 21 C 1.31238 * 109.24390 * 359.97438 * 20 19 18 22 22 C 1.47852 * 126.37636 * 179.97438 * 21 20 19 23 23 C 1.39558 * 120.13665 * 179.70041 * 22 21 20 24 24 C 1.37969 * 119.84821 * 179.73003 * 23 22 21 25 25 C 1.38353 * 120.14594 * 0.57616 * 24 23 22 26 26 C 1.38357 * 120.28705 * 359.69783 * 25 24 23 27 27 C 1.37965 * 120.14155 * 0.02562 * 26 25 24 28 28 O 1.34404 * 126.18930 * 269.71583 * 18 17 16 29 29 H 0.96995 * 120.00606 * 0.02562 * 1 2 3 30 30 H 1.09004 * 109.46640 * 60.00153 * 9 7 2 31 31 H 1.08994 * 109.47192 * 299.99973 * 9 7 2 32 32 H 1.08994 * 109.47425 * 60.00044 * 10 9 7 33 33 H 1.09003 * 109.47122 * 300.00289 * 10 9 7 34 34 H 1.09004 * 109.47218 * 59.99574 * 11 10 9 35 35 H 1.09004 * 109.46609 * 300.00347 * 11 10 9 36 36 H 0.97004 * 120.00364 * 359.97438 * 12 11 10 37 37 H 0.97004 * 120.00228 * 0.02562 * 15 13 12 38 38 H 1.09002 * 109.47129 * 59.99747 * 16 15 13 39 39 H 1.08998 * 109.46845 * 300.00553 * 16 15 13 40 40 H 1.09002 * 109.47153 * 59.99757 * 17 16 15 41 41 H 1.09001 * 109.46832 * 299.99948 * 17 16 15 42 42 H 1.07994 * 120.07574 * 0.02764 * 23 22 21 43 43 H 1.08000 * 119.92532 * 180.29997 * 24 23 22 44 44 H 1.08000 * 119.85992 * 179.72468 * 25 24 23 45 45 H 1.08000 * 119.92678 * 180.02562 * 26 25 24 46 46 H 1.08007 * 120.07125 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1028 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4802 -4.9872 -0.0001 12 7 2.4322 -6.1006 0.0005 13 6 1.9830 -7.3713 0.0006 14 8 0.7875 -7.5935 0.0007 15 7 2.8588 -8.3957 0.0007 16 6 2.3705 -9.7770 0.0002 17 6 3.5604 -10.7386 0.0010 18 6 3.0581 -12.1595 0.0012 19 7 2.8024 -12.8856 -1.0511 20 7 2.3917 -14.0478 -0.6821 21 6 2.3717 -14.1034 0.6289 22 6 1.9617 -15.2617 1.4513 23 6 1.9971 -15.1798 2.8440 24 6 1.6079 -16.2623 3.6057 25 6 1.1946 -17.4313 2.9917 26 6 1.1627 -17.5208 1.6114 27 6 1.5438 -16.4436 0.8383 28 8 2.7981 -12.9092 1.0860 29 1 -0.4851 0.8399 -0.0004 30 1 0.6247 -2.5571 -0.8897 31 1 0.6240 -2.5568 0.8902 32 1 2.8719 -3.6044 0.8905 33 1 2.8719 -3.6044 -0.8894 34 1 0.8538 -5.0447 -0.8903 35 1 0.8532 -5.0451 0.8897 36 1 3.3859 -5.9234 0.0008 37 1 3.8125 -8.2185 0.0010 38 1 1.7652 -9.9481 -0.8900 39 1 1.7646 -9.9484 0.8899 40 1 4.1654 -10.5674 0.8914 41 1 4.1666 -10.5673 -0.8885 42 1 2.3238 -14.2695 3.3245 43 1 1.6302 -16.1986 4.6836 44 1 0.8951 -18.2773 3.5924 45 1 0.8386 -18.4360 1.1382 46 1 1.5181 -16.5147 -0.2392 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000178743405.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:12 Heat of formation + Delta-G solvation = 19.348655 kcal Electronic energy + Delta-G solvation = -26916.258146 eV Core-core repulsion = 22807.447433 eV Total energy + Delta-G solvation = -4108.810713 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -44.62848 -39.91045 -39.69862 -36.64948 -36.35942 -35.20481 -33.69408 -33.28324 -32.05739 -31.65669 -30.98539 -29.06867 -26.71667 -25.05187 -24.67671 -23.33054 -22.81071 -22.23164 -22.12606 -20.93608 -20.43578 -18.52748 -18.16867 -17.84337 -17.04519 -16.61590 -16.45407 -16.14527 -15.89139 -15.53645 -14.98959 -14.83618 -14.51706 -14.49964 -14.29117 -14.11133 -13.82739 -13.81829 -13.60830 -12.90921 -12.68335 -12.36542 -12.35106 -12.27514 -12.11390 -11.82210 -11.81449 -11.66087 -11.37320 -10.88588 -10.75252 -10.72819 -10.62435 -10.19421 -9.86228 -9.65057 -9.45210 -9.34451 -9.14248 -9.11813 -8.66604 -8.36861 -6.01555 -4.04866 -0.10678 0.71709 1.08982 1.59750 1.98087 2.65360 3.14493 3.25226 3.29788 3.31947 3.36915 3.38629 3.77455 4.13041 4.21128 4.27995 4.32436 4.42196 4.45415 4.47089 4.67073 4.69033 4.74602 4.83082 4.95279 5.09499 5.19513 5.34151 5.36310 5.38391 5.46536 5.69318 5.73023 5.74303 5.80363 5.81866 6.16213 6.19744 6.24506 6.49588 6.61376 6.74976 6.99247 7.01442 7.63564 7.76565 7.79270 7.97074 8.06826 8.37844 8.67521 9.01613 9.59264 11.09708 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.031353 B = 0.001225 C = 0.001206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.831836 B =22852.998979 C =23209.192342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.524 4.524 8 H 0.055 0.945 9 C 0.024 3.976 10 C -0.120 4.120 11 C 0.134 3.866 12 N -0.739 5.739 13 C 0.702 3.298 14 O -0.590 6.590 15 N -0.751 5.751 16 C 0.144 3.856 17 C -0.035 4.035 18 C 0.174 3.826 19 N -0.273 5.273 20 N -0.273 5.273 21 C 0.209 3.791 22 C -0.027 4.027 23 C -0.083 4.083 24 C -0.121 4.121 25 C -0.094 4.094 26 C -0.121 4.121 27 C -0.066 4.066 28 O -0.217 6.217 29 H 0.262 0.738 30 H 0.019 0.981 31 H 0.019 0.981 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.394 0.606 37 H 0.397 0.603 38 H 0.078 0.922 39 H 0.072 0.928 40 H 0.107 0.893 41 H 0.122 0.878 42 H 0.133 0.867 43 H 0.134 0.866 44 H 0.131 0.869 45 H 0.135 0.865 46 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.885 -37.075 6.104 38.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.562 4.562 8 H 0.073 0.927 9 C -0.014 4.014 10 C -0.158 4.158 11 C 0.011 3.989 12 N -0.394 5.394 13 C 0.401 3.599 14 O -0.467 6.467 15 N -0.409 5.409 16 C 0.018 3.982 17 C -0.074 4.074 18 C -0.037 4.037 19 N -0.120 5.120 20 N -0.121 5.121 21 C 0.002 3.998 22 C -0.029 4.029 23 C -0.103 4.103 24 C -0.139 4.139 25 C -0.113 4.113 26 C -0.139 4.139 27 C -0.086 4.086 28 O -0.096 6.096 29 H 0.071 0.929 30 H 0.038 0.962 31 H 0.038 0.962 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.228 0.772 37 H 0.231 0.769 38 H 0.096 0.904 39 H 0.090 0.910 40 H 0.126 0.874 41 H 0.140 0.860 42 H 0.151 0.849 43 H 0.152 0.848 44 H 0.149 0.851 45 H 0.153 0.847 46 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 7.467 -37.453 4.834 38.495 hybrid contribution 1.498 1.506 1.207 2.443 sum 8.964 -35.946 6.041 37.536 Atomic orbital electron populations 1.69950 1.06064 1.26812 1.50411 1.25021 0.94841 0.99265 0.95248 0.86648 0.79569 0.83128 0.78573 1.20242 1.21263 1.20261 1.21168 0.92945 0.90966 1.51146 0.92709 1.19024 0.93856 0.90782 0.97713 1.21893 0.99802 0.93294 1.00845 1.21538 0.91288 0.84081 1.01982 1.45370 1.10545 1.04316 1.79123 1.15943 0.85168 0.80744 0.78019 1.90945 1.14106 1.84062 1.57624 1.44920 1.09165 1.04701 1.82112 1.20992 0.94327 0.79084 1.03792 1.20353 0.98757 0.81436 1.06860 1.27588 0.99570 0.97174 0.79371 1.74458 1.14208 0.98154 1.25219 1.74752 1.16463 1.12701 1.08168 1.25494 0.98281 0.85436 0.90593 1.17244 1.05025 0.89061 0.91530 1.21308 0.97537 0.99588 0.91841 1.21140 0.99402 0.92845 1.00489 1.21467 0.96913 0.97917 0.94972 1.21169 1.00151 0.98709 0.93843 1.21235 0.95353 0.90758 1.01232 1.84828 1.63865 1.22909 1.37989 0.92860 0.96228 0.96236 0.92749 0.92726 0.91856 0.91900 0.77224 0.76911 0.90417 0.90985 0.87445 0.86009 0.84916 0.84847 0.85118 0.84685 0.84144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.76 13.29 55.43 0.74 -26.02 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 3 Si 0.89 21.38 29.54 -169.99 -5.02 16.36 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.52 -14.55 9.11 -34.44 -0.31 -14.86 16 8 H 0.05 1.46 7.74 -52.48 -0.41 1.05 16 9 C 0.02 0.60 4.97 -27.89 -0.14 0.47 16 10 C -0.12 -2.31 5.27 -26.73 -0.14 -2.45 16 11 C 0.13 2.35 5.67 -4.05 -0.02 2.33 16 12 N -0.74 -10.23 5.56 -65.23 -0.36 -10.60 16 13 C 0.70 10.26 8.57 -86.92 -0.74 9.52 16 14 O -0.59 -11.48 16.34 5.29 0.09 -11.40 16 15 N -0.75 -7.08 5.56 -65.23 -0.36 -7.44 16 16 C 0.14 1.28 5.66 -4.04 -0.02 1.26 16 17 C -0.04 -0.20 5.96 -27.88 -0.17 -0.37 16 18 C 0.17 1.61 7.73 -12.89 -0.10 1.51 16 19 N -0.27 -3.22 12.22 32.58 0.40 -2.83 16 20 N -0.27 -3.25 11.92 32.07 0.38 -2.87 16 21 C 0.21 2.11 7.99 -13.87 -0.11 2.00 16 22 C -0.03 -0.21 5.87 -104.98 -0.62 -0.83 16 23 C -0.08 -0.51 9.73 -39.19 -0.38 -0.89 16 24 C -0.12 -0.54 10.03 -39.64 -0.40 -0.94 16 25 C -0.09 -0.37 10.04 -39.50 -0.40 -0.76 16 26 C -0.12 -0.54 10.03 -39.64 -0.40 -0.94 16 27 C -0.07 -0.43 9.70 -39.19 -0.38 -0.81 16 28 O -0.22 -2.07 10.67 4.06 0.04 -2.03 16 29 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 30 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 33 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 34 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 36 H 0.39 4.16 8.49 -40.82 -0.35 3.81 16 37 H 0.40 2.27 8.49 -40.82 -0.35 1.92 16 38 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 39 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 40 H 0.11 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.12 0.51 8.14 -51.93 -0.42 0.08 16 42 H 0.13 0.69 7.93 -52.49 -0.42 0.27 16 43 H 0.13 0.31 8.06 -52.49 -0.42 -0.11 16 44 H 0.13 0.21 8.06 -52.49 -0.42 -0.22 16 45 H 0.14 0.30 8.06 -52.49 -0.42 -0.12 16 46 H 0.14 0.88 7.87 -52.48 -0.41 0.46 16 LS Contribution 402.61 15.07 6.07 6.07 Total: -1.00 -36.81 402.61 -9.02 -45.83 By element: Atomic # 1 Polarization: 5.73 SS G_CDS: -6.56 Total: -0.83 kcal Atomic # 6 Polarization: 0.19 SS G_CDS: -4.43 Total: -4.24 kcal Atomic # 7 Polarization: -50.55 SS G_CDS: 0.79 Total: -49.76 kcal Atomic # 8 Polarization: -13.55 SS G_CDS: 0.13 Total: -13.42 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -36.81 -9.02 -45.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178743405.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.175 kcal (2) G-P(sol) polarization free energy of solvation -36.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.827 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds