Wall clock time and date at job start Wed Apr 1 2020 03:05:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86795 * 120.00193 * 2 1 4 4 H 1.48501 * 109.47470 * 239.99881 * 3 2 1 5 5 H 1.48505 * 109.47054 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.47251 * 119.99425 * 3 2 1 7 7 C 1.37885 * 119.99757 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99409 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00278 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47134 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47226 * 180.02562 * 10 9 7 12 12 N 1.46490 * 109.47285 * 180.02562 * 11 10 9 13 13 C 1.34773 * 120.00326 * 179.97438 * 12 11 10 14 14 O 1.21591 * 120.00000 * 359.97438 * 13 12 11 15 15 N 1.34777 * 120.00462 * 179.97438 * 13 12 11 16 16 C 1.46500 * 120.00376 * 180.02562 * 15 13 12 17 17 C 1.52997 * 109.47473 * 180.02562 * 16 15 13 18 18 C 1.50701 * 109.47212 * 179.97438 * 17 16 15 19 19 N 1.30381 * 126.18401 * 90.02317 * 18 17 16 20 20 N 1.28666 * 109.52796 * 179.97438 * 19 18 17 21 21 C 1.31238 * 109.24390 * 359.97438 * 20 19 18 22 22 C 1.47852 * 126.37636 * 179.97438 * 21 20 19 23 23 C 1.39558 * 120.13665 * 179.70041 * 22 21 20 24 24 C 1.37969 * 119.84821 * 179.73003 * 23 22 21 25 25 C 1.38353 * 120.14594 * 0.57616 * 24 23 22 26 26 C 1.38357 * 120.28705 * 359.69783 * 25 24 23 27 27 C 1.37965 * 120.14155 * 0.02562 * 26 25 24 28 28 O 1.34404 * 126.18930 * 269.71583 * 18 17 16 29 29 H 0.96995 * 120.00606 * 0.02562 * 1 2 3 30 30 H 1.09004 * 109.46640 * 60.00153 * 9 7 2 31 31 H 1.08994 * 109.47192 * 299.99973 * 9 7 2 32 32 H 1.08994 * 109.47425 * 60.00044 * 10 9 7 33 33 H 1.09003 * 109.47122 * 300.00289 * 10 9 7 34 34 H 1.09004 * 109.47218 * 59.99574 * 11 10 9 35 35 H 1.09004 * 109.46609 * 300.00347 * 11 10 9 36 36 H 0.97004 * 120.00364 * 359.97438 * 12 11 10 37 37 H 0.97004 * 120.00228 * 0.02562 * 15 13 12 38 38 H 1.09002 * 109.47129 * 59.99747 * 16 15 13 39 39 H 1.08998 * 109.46845 * 300.00553 * 16 15 13 40 40 H 1.09002 * 109.47153 * 59.99757 * 17 16 15 41 41 H 1.09001 * 109.46832 * 299.99948 * 17 16 15 42 42 H 1.07994 * 120.07574 * 0.02764 * 23 22 21 43 43 H 1.08000 * 119.92532 * 180.29997 * 24 23 22 44 44 H 1.08000 * 119.85992 * 179.72468 * 25 24 23 45 45 H 1.08000 * 119.92678 * 180.02562 * 26 25 24 46 46 H 1.08007 * 120.07125 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1028 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4802 -4.9872 -0.0001 12 7 2.4322 -6.1006 0.0005 13 6 1.9830 -7.3713 0.0006 14 8 0.7875 -7.5935 0.0007 15 7 2.8588 -8.3957 0.0007 16 6 2.3705 -9.7770 0.0002 17 6 3.5604 -10.7386 0.0010 18 6 3.0581 -12.1595 0.0012 19 7 2.8024 -12.8856 -1.0511 20 7 2.3917 -14.0478 -0.6821 21 6 2.3717 -14.1034 0.6289 22 6 1.9617 -15.2617 1.4513 23 6 1.9971 -15.1798 2.8440 24 6 1.6079 -16.2623 3.6057 25 6 1.1946 -17.4313 2.9917 26 6 1.1627 -17.5208 1.6114 27 6 1.5438 -16.4436 0.8383 28 8 2.7981 -12.9092 1.0860 29 1 -0.4851 0.8399 -0.0004 30 1 0.6247 -2.5571 -0.8897 31 1 0.6240 -2.5568 0.8902 32 1 2.8719 -3.6044 0.8905 33 1 2.8719 -3.6044 -0.8894 34 1 0.8538 -5.0447 -0.8903 35 1 0.8532 -5.0451 0.8897 36 1 3.3859 -5.9234 0.0008 37 1 3.8125 -8.2185 0.0010 38 1 1.7652 -9.9481 -0.8900 39 1 1.7646 -9.9484 0.8899 40 1 4.1654 -10.5674 0.8914 41 1 4.1666 -10.5673 -0.8885 42 1 2.3238 -14.2695 3.3245 43 1 1.6302 -16.1986 4.6836 44 1 0.8951 -18.2773 3.5924 45 1 0.8386 -18.4360 1.1382 46 1 1.5181 -16.5147 -0.2392 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000178743405.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:12 Heat of formation + Delta-G solvation = -9.918010 kcal Electronic energy + Delta-G solvation = -26917.527244 eV Core-core repulsion = 22807.447433 eV Total energy + Delta-G solvation = -4110.079811 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -45.36249 -41.07190 -40.09804 -37.42053 -37.39567 -36.55786 -35.19037 -34.37678 -33.15223 -32.26797 -32.03787 -29.86285 -28.40597 -25.90790 -25.45478 -24.65079 -23.62193 -22.76573 -22.74927 -22.29524 -21.93086 -19.44460 -18.92374 -18.65794 -18.46652 -17.67151 -17.35023 -17.04456 -16.79777 -16.50201 -16.16544 -16.04595 -15.62670 -15.38208 -15.16243 -14.94087 -14.85109 -14.47071 -14.22880 -14.06830 -13.72215 -13.68280 -13.55143 -13.33971 -13.13240 -12.88430 -12.69535 -12.53158 -12.52057 -12.38266 -12.23992 -11.98852 -11.68168 -11.63953 -11.38263 -11.31034 -11.15186 -10.52877 -10.45751 -10.03590 -9.81525 -9.66197 -8.17510 -6.29124 -0.67434 0.33771 0.48222 0.93594 1.27151 1.43167 1.46163 1.53905 1.67030 2.11244 2.43520 2.59034 2.73781 3.13838 3.16402 3.39380 3.59761 3.63096 3.90235 3.95566 4.05314 4.08481 4.13467 4.19316 4.25524 4.26067 4.40412 4.48000 4.52686 4.58741 4.73552 4.78650 4.80569 4.98435 5.01122 5.01582 5.19733 5.30990 5.33390 5.38277 5.46176 5.47758 5.55907 5.73663 5.85676 5.86426 5.99400 6.24497 6.88333 7.04257 7.10933 7.40565 7.55606 8.94449 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.031353 B = 0.001225 C = 0.001206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.831836 B =22852.998979 C =23209.192342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.002 4.002 3 Si 0.966 3.034 4 H -0.265 1.265 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.542 4.542 8 H 0.068 0.932 9 C 0.022 3.978 10 C -0.100 4.100 11 C 0.149 3.851 12 N -0.726 5.726 13 C 0.698 3.302 14 O -0.643 6.643 15 N -0.724 5.724 16 C 0.147 3.853 17 C -0.021 4.021 18 C 0.177 3.823 19 N -0.307 5.307 20 N -0.308 5.308 21 C 0.213 3.787 22 C -0.056 4.056 23 C -0.090 4.090 24 C -0.122 4.122 25 C -0.087 4.087 26 C -0.122 4.122 27 C -0.079 4.079 28 O -0.219 6.219 29 H 0.263 0.737 30 H -0.009 1.009 31 H -0.008 1.008 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.045 0.955 35 H 0.046 0.954 36 H 0.415 0.585 37 H 0.420 0.580 38 H 0.056 0.944 39 H 0.059 0.941 40 H 0.142 0.858 41 H 0.145 0.855 42 H 0.137 0.863 43 H 0.158 0.842 44 H 0.161 0.839 45 H 0.158 0.842 46 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.493 -38.028 7.501 40.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.200 4.200 3 Si 0.791 3.209 4 H -0.190 1.190 5 H -0.213 1.213 6 H -0.190 1.190 7 C -0.580 4.580 8 H 0.086 0.914 9 C -0.015 4.015 10 C -0.138 4.138 11 C 0.024 3.976 12 N -0.382 5.382 13 C 0.398 3.602 14 O -0.524 6.524 15 N -0.383 5.383 16 C 0.021 3.979 17 C -0.060 4.060 18 C -0.034 4.034 19 N -0.153 5.153 20 N -0.155 5.155 21 C 0.005 3.995 22 C -0.058 4.058 23 C -0.110 4.110 24 C -0.140 4.140 25 C -0.105 4.105 26 C -0.139 4.139 27 C -0.099 4.099 28 O -0.099 6.099 29 H 0.071 0.929 30 H 0.009 0.991 31 H 0.010 0.990 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.063 0.937 35 H 0.065 0.935 36 H 0.252 0.748 37 H 0.258 0.742 38 H 0.074 0.926 39 H 0.078 0.922 40 H 0.160 0.840 41 H 0.163 0.837 42 H 0.155 0.845 43 H 0.176 0.824 44 H 0.179 0.821 45 H 0.176 0.824 46 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 10.171 -38.439 6.215 40.245 hybrid contribution 0.632 1.676 0.834 1.976 sum 10.803 -36.762 7.050 38.960 Atomic orbital electron populations 1.70105 1.07992 1.27824 1.51668 1.26014 0.95695 1.03525 0.94765 0.85481 0.78193 0.77957 0.79289 1.19008 1.21287 1.18962 1.21671 0.93804 0.91992 1.50533 0.91396 1.18948 0.94506 0.93026 0.95051 1.21586 0.98404 0.91524 1.02276 1.21082 0.91402 0.84696 1.00438 1.44962 1.10994 1.03299 1.78924 1.16120 0.84926 0.81485 0.77696 1.90919 1.16760 1.84850 1.59893 1.44592 1.09752 1.03713 1.80226 1.20919 0.95547 0.79211 1.02223 1.20456 0.97464 0.78351 1.09705 1.28173 0.98478 0.97964 0.78808 1.74369 1.15600 0.98717 1.26629 1.74678 1.18235 1.13270 1.09288 1.25994 0.97081 0.85943 0.90463 1.17477 1.07104 0.88916 0.92253 1.21475 0.97732 1.00566 0.91222 1.21490 0.98436 0.92354 1.01682 1.21884 0.95189 0.98547 0.94914 1.21485 0.99341 0.98777 0.94321 1.21343 0.95999 0.91229 1.01282 1.84838 1.64054 1.22923 1.38093 0.92863 0.99057 0.98970 0.91128 0.91227 0.93653 0.93535 0.74825 0.74152 0.92604 0.92231 0.84016 0.83726 0.84505 0.82406 0.82116 0.82393 0.84890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.19 13.29 21.45 0.28 -56.91 16 2 C 0.00 -0.13 5.46 84.66 0.46 0.33 16 3 Si 0.97 43.47 29.54 68.60 2.03 45.49 16 4 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 5 H -0.29 -12.82 7.11 99.48 0.71 -12.11 16 6 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 7 C -0.54 -30.00 9.11 25.60 0.23 -29.77 16 8 H 0.07 3.50 7.74 -2.91 -0.02 3.47 16 9 C 0.02 1.16 4.97 29.85 0.15 1.31 16 10 C -0.10 -3.75 5.27 30.59 0.16 -3.59 16 11 C 0.15 5.21 5.67 86.38 0.49 5.70 16 12 N -0.73 -19.00 5.56 -478.55 -2.66 -21.66 16 13 C 0.70 19.83 8.57 179.06 1.53 21.36 16 14 O -0.64 -25.51 16.34 -4.00 -0.07 -25.58 16 15 N -0.72 -12.21 5.56 -478.54 -2.66 -14.87 16 16 C 0.15 2.49 5.66 86.38 0.49 2.98 16 17 C -0.02 -0.20 5.96 29.85 0.18 -0.02 16 18 C 0.18 3.23 7.73 88.32 0.68 3.91 16 19 N -0.31 -7.50 12.22 -165.34 -2.02 -9.52 16 20 N -0.31 -7.78 11.92 -166.30 -1.98 -9.76 16 21 C 0.21 4.49 7.99 87.33 0.70 5.19 16 22 C -0.06 -0.90 5.87 -20.10 -0.12 -1.01 16 23 C -0.09 -1.05 9.73 22.52 0.22 -0.83 16 24 C -0.12 -0.83 10.03 22.23 0.22 -0.61 16 25 C -0.09 -0.46 10.04 22.33 0.22 -0.23 16 26 C -0.12 -0.92 10.03 22.23 0.22 -0.69 16 27 C -0.08 -1.05 9.70 22.52 0.22 -0.83 16 28 O -0.22 -4.22 10.67 -8.39 -0.09 -4.31 16 29 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 30 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 31 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 32 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 33 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 34 H 0.05 1.75 8.14 -2.39 -0.02 1.74 16 35 H 0.05 1.79 8.14 -2.38 -0.02 1.77 16 36 H 0.41 7.49 8.49 -92.71 -0.79 6.70 16 37 H 0.42 3.30 8.49 -92.71 -0.79 2.51 16 38 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 40 H 0.14 0.43 8.14 -2.39 -0.02 0.41 16 41 H 0.14 0.77 8.14 -2.39 -0.02 0.75 16 42 H 0.14 1.36 7.93 -2.91 -0.02 1.34 16 43 H 0.16 0.26 8.06 -2.91 -0.02 0.24 16 44 H 0.16 -0.12 8.06 -2.91 -0.02 -0.14 16 45 H 0.16 0.38 8.06 -2.91 -0.02 0.36 16 46 H 0.13 1.85 7.87 -2.91 -0.02 1.83 16 Total: -1.00 -84.11 402.61 -1.66 -85.77 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: -0.56 Total: 8.16 kcal Atomic # 6 Polarization: -2.89 SS G_CDS: 6.06 Total: 3.18 kcal Atomic # 7 Polarization: -103.68 SS G_CDS: -9.04 Total: -112.72 kcal Atomic # 8 Polarization: -29.73 SS G_CDS: -0.15 Total: -29.89 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.49 kcal Total: -84.11 -1.66 -85.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178743405.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.851 kcal (2) G-P(sol) polarization free energy of solvation -84.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds