Wall clock time and date at job start Wed Apr 1 2020 02:10:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42905 * 113.99757 * 2 1 4 4 C 1.52999 * 109.46724 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.47099 * 179.97438 * 4 3 2 6 6 C 1.35466 * 124.79284 * 265.02721 * 5 4 3 7 7 C 1.36370 * 109.77195 * 179.97438 * 6 5 4 8 8 C 1.46909 * 126.76718 * 180.02562 * 7 6 5 9 9 O 1.21679 * 120.00120 * 180.02562 * 8 7 6 10 10 N 1.34775 * 120.00454 * 0.02562 * 8 7 6 11 11 C 1.47578 * 134.49450 * 179.97438 * 10 8 7 12 12 C 1.53950 * 86.11711 * 204.63842 * 11 10 8 13 13 O 1.42905 * 113.73786 * 90.74298 * 12 11 10 14 14 C 1.50702 * 113.74361 * 221.94119 * 12 11 10 15 15 H 1.07997 * 119.99716 * 358.07712 * 14 12 11 16 16 C 1.37877 * 119.99683 * 178.07946 * 14 12 11 17 17 N 1.31508 * 120.00243 * 359.97438 * 16 14 12 18 18 Si 1.86800 * 119.99629 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.47107 * 0.02562 * 18 16 14 20 20 H 1.48506 * 109.47073 * 119.99658 * 18 16 14 21 21 H 1.48494 * 109.47295 * 239.99842 * 18 16 14 22 22 C 1.47930 * 134.50005 * 0.02562 * 10 8 7 23 23 C 1.47440 * 106.45990 * 0.26174 * 7 6 5 24 24 C 1.39288 * 134.00143 * 180.59229 * 23 7 6 25 25 C 1.37751 * 119.66581 * 179.55341 * 24 23 7 26 26 C 1.38745 * 120.30625 * 359.64381 * 25 24 23 27 27 C 1.37762 * 120.63561 * 0.02562 * 26 25 24 28 28 C 1.37969 * 124.78026 * 84.98698 * 5 4 3 29 29 H 1.08999 * 109.47099 * 300.00660 * 1 2 3 30 30 H 1.09005 * 109.46871 * 60.00107 * 1 2 3 31 31 H 1.08996 * 109.47373 * 180.02562 * 1 2 3 32 32 H 1.08989 * 109.47399 * 60.00148 * 3 2 1 33 33 H 1.08998 * 109.47327 * 299.99254 * 3 2 1 34 34 H 1.09005 * 109.47025 * 60.00139 * 4 3 2 35 35 H 1.08994 * 109.47564 * 299.99981 * 4 3 2 36 36 H 1.08000 * 125.11122 * 359.96144 * 6 5 4 37 37 H 1.09007 * 113.76850 * 90.34613 * 11 10 8 38 38 H 1.08993 * 113.77344 * 318.94486 * 11 10 8 39 39 H 0.96696 * 114.00036 * 181.92461 * 13 12 11 40 40 H 0.97001 * 119.99758 * 179.97438 * 17 16 14 41 41 H 1.09003 * 113.86941 * 41.08934 * 22 10 8 42 42 H 1.09003 * 113.76390 * 269.60255 * 22 10 8 43 43 H 1.07995 * 120.16349 * 359.20316 * 24 23 7 44 44 H 1.08004 * 119.84166 * 179.67688 * 25 24 23 45 45 H 1.08003 * 119.68500 * 180.02562 * 26 25 24 46 46 H 1.08003 * 120.03826 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 4.1313 2.5230 0.0000 6 6 4.5342 3.1892 -1.1085 7 6 5.0413 4.4054 -0.7570 8 6 5.5825 5.4276 -1.6629 9 8 6.0062 6.4759 -1.2134 10 7 5.6098 5.2042 -2.9917 11 6 6.0658 5.9795 -4.1617 12 6 5.0664 5.1388 -4.9768 13 8 3.7651 5.7222 -5.0696 14 6 5.6022 4.6829 -6.3096 15 1 6.5922 4.9791 -6.6234 16 6 4.8284 3.8879 -7.1282 17 7 3.6230 3.5270 -6.7458 18 14 5.4922 3.3234 -8.7805 19 1 6.8630 3.8613 -8.9731 20 1 5.5339 1.8394 -8.8164 21 1 4.6080 3.8202 -9.8651 22 6 5.1938 4.0838 -3.8635 23 6 4.9447 4.4896 0.7118 24 6 5.2797 5.4639 1.6492 25 6 5.0480 5.2310 2.9870 26 6 4.4772 4.0362 3.4011 27 6 4.1347 3.0668 2.4841 28 6 4.3606 3.2830 1.1285 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.6886 1.8464 0.8899 33 1 1.6887 1.8464 -0.8900 34 1 3.8574 0.6436 -0.8892 35 1 3.8567 0.6440 0.8908 36 1 4.4645 2.8136 -2.1187 37 1 7.1080 5.8022 -4.4271 38 1 5.8121 7.0384 -4.1130 39 1 3.1263 5.1833 -5.5559 40 1 3.0785 2.9680 -7.3219 41 1 4.2447 3.6308 -3.5769 42 1 5.9802 3.3503 -4.0414 43 1 5.7240 6.3947 1.3293 44 1 5.3115 5.9823 3.7168 45 1 4.2996 3.8643 4.4525 46 1 3.6912 2.1401 2.8172 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000193979610.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:10:16 Heat of formation + Delta-G solvation = -23.421223 kcal Electronic energy + Delta-G solvation = -30109.338888 eV Core-core repulsion = 25966.380783 eV Total energy + Delta-G solvation = -4142.958106 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.51395 -39.26098 -38.29337 -37.05622 -37.03808 -33.92934 -33.38246 -32.24689 -30.77933 -29.54753 -28.99768 -27.86905 -26.49575 -25.39649 -25.26615 -23.62979 -22.75685 -21.88894 -20.84079 -19.66239 -18.46717 -17.55519 -17.12668 -16.90210 -16.41204 -16.20430 -15.83821 -15.47006 -15.26709 -15.23084 -14.74396 -14.57090 -14.23673 -14.05087 -13.92948 -13.78414 -13.38495 -13.09755 -12.80068 -12.51796 -12.38123 -12.18745 -11.96811 -11.86742 -11.73148 -11.59575 -11.56204 -11.24951 -11.11718 -11.00755 -10.86653 -10.52069 -10.30471 -10.06868 -9.62868 -9.54887 -9.18457 -8.79305 -8.41316 -8.22719 -7.88014 -7.55514 -6.42457 -4.52282 1.09290 1.59221 2.20616 2.44728 3.11381 3.21471 3.25372 3.53261 3.63075 3.78806 4.14870 4.19385 4.38262 4.61035 4.66955 4.81004 4.82765 4.93446 4.97431 5.00509 5.06385 5.12237 5.15220 5.30554 5.34893 5.39197 5.53759 5.56652 5.65456 5.75591 5.78137 5.92282 6.10321 6.23352 6.36993 6.45223 6.47287 6.60020 6.62348 6.66223 6.69671 6.75504 6.87634 7.08788 7.15238 7.20372 7.60289 7.80241 8.51690 8.54204 8.92137 9.19310 9.40621 10.64106 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.009730 B = 0.003548 C = 0.002731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2877.044936 B = 7889.159255 C =10248.543807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.389 6.389 3 C 0.044 3.956 4 C 0.111 3.889 5 N -0.471 5.471 6 C 0.102 3.898 7 C -0.209 4.209 8 C 0.602 3.398 9 O -0.565 6.565 10 N -0.631 5.631 11 C 0.115 3.885 12 C 0.239 3.761 13 O -0.571 6.571 14 C -0.535 4.535 15 H 0.072 0.928 16 C 0.072 3.928 17 N -0.899 5.899 18 Si 0.906 3.094 19 H -0.270 1.270 20 H -0.281 1.281 21 H -0.281 1.281 22 C 0.073 3.927 23 C -0.061 4.061 24 C -0.059 4.059 25 C -0.148 4.148 26 C -0.103 4.103 27 C -0.129 4.129 28 C 0.087 3.913 29 H 0.042 0.958 30 H 0.046 0.954 31 H 0.089 0.911 32 H 0.057 0.943 33 H 0.061 0.939 34 H 0.104 0.896 35 H 0.097 0.903 36 H 0.185 0.815 37 H 0.086 0.914 38 H 0.071 0.929 39 H 0.391 0.609 40 H 0.272 0.728 41 H 0.068 0.932 42 H 0.083 0.917 43 H 0.133 0.867 44 H 0.122 0.878 45 H 0.123 0.877 46 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.857 -7.861 14.833 17.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.307 6.307 3 C -0.034 4.034 4 C -0.011 4.011 5 N -0.155 5.155 6 C -0.027 4.027 7 C -0.219 4.219 8 C 0.394 3.606 9 O -0.447 6.447 10 N -0.364 5.364 11 C -0.007 4.007 12 C 0.198 3.802 13 O -0.382 6.382 14 C -0.573 4.573 15 H 0.090 0.910 16 C -0.130 4.130 17 N -0.539 5.539 18 Si 0.733 3.267 19 H -0.194 1.194 20 H -0.207 1.207 21 H -0.207 1.207 22 C -0.050 4.050 23 C -0.066 4.066 24 C -0.078 4.078 25 C -0.167 4.167 26 C -0.123 4.123 27 C -0.150 4.150 28 C -0.017 4.017 29 H 0.061 0.939 30 H 0.064 0.936 31 H 0.107 0.893 32 H 0.075 0.925 33 H 0.080 0.920 34 H 0.122 0.878 35 H 0.115 0.885 36 H 0.202 0.798 37 H 0.104 0.896 38 H 0.089 0.911 39 H 0.245 0.755 40 H 0.082 0.918 41 H 0.086 0.914 42 H 0.101 0.899 43 H 0.151 0.849 44 H 0.140 0.860 45 H 0.141 0.859 46 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -3.554 -7.395 15.533 17.567 hybrid contribution -0.349 -0.834 -1.230 1.527 sum -3.904 -8.230 14.302 16.956 Atomic orbital electron populations 1.22784 0.80108 1.03021 1.00431 1.87786 1.20459 1.26908 1.95583 1.22861 0.93311 0.85419 1.01818 1.21541 0.92026 0.81661 1.05891 1.43560 1.51979 1.14962 1.04964 1.22746 0.96192 0.92061 0.91678 1.20141 1.13179 0.96240 0.92307 1.16802 0.78185 0.85665 0.79990 1.90696 1.50641 1.27436 1.75902 1.50043 1.61114 1.21796 1.03462 1.23413 0.98722 0.97620 0.80898 1.19838 0.82220 0.87028 0.91140 1.86083 1.22083 1.50839 1.79243 1.21565 1.02405 1.31229 1.02141 0.90956 1.25055 0.94665 0.94611 0.98663 1.69407 1.09506 1.36963 1.38063 0.86304 0.79336 0.78321 0.82715 1.19415 1.20730 1.20659 1.24448 0.98454 0.92671 0.89430 1.18804 1.01971 0.94020 0.91785 1.20732 0.97158 0.98364 0.91530 1.20931 1.02492 0.97824 0.95421 1.20754 0.99336 0.93539 0.98625 1.19947 1.05479 1.00521 0.89039 1.18274 1.03070 0.91968 0.88344 0.93926 0.93556 0.89251 0.92522 0.92050 0.87766 0.88491 0.79799 0.89644 0.91070 0.75486 0.91805 0.91410 0.89876 0.84892 0.85964 0.85903 0.86473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 11.01 101.05 1.11 1.37 16 2 O -0.39 -4.03 10.70 -35.23 -0.38 -4.41 16 3 C 0.04 0.45 6.26 37.16 0.23 0.68 16 4 C 0.11 1.12 6.32 -4.04 -0.03 1.10 16 5 N -0.47 -6.30 2.74 -114.22 -0.31 -6.61 16 6 C 0.10 1.60 10.39 -16.62 -0.17 1.43 16 7 C -0.21 -3.89 6.27 -103.31 -0.65 -4.54 16 8 C 0.60 13.12 8.03 -12.75 -0.10 13.02 16 9 O -0.57 -13.70 16.89 5.21 0.09 -13.61 16 10 N -0.63 -13.50 3.62 -179.49 -0.65 -14.15 16 11 C 0.12 2.51 8.23 -2.97 -0.02 2.49 16 12 C 0.24 5.59 1.40 -90.86 -0.13 5.46 16 13 O -0.57 -14.38 13.48 -35.23 -0.48 -14.86 16 14 C -0.54 -13.05 8.61 -34.44 -0.30 -13.34 16 15 H 0.07 1.73 7.81 -52.49 -0.41 1.32 16 16 C 0.07 1.75 5.39 -17.82 -0.10 1.65 16 17 N -0.90 -21.90 11.20 55.43 0.62 -21.28 16 18 Si 0.91 18.98 29.54 -169.99 -5.02 13.96 16 19 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 20 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 21 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 22 C 0.07 1.49 6.56 -2.80 -0.02 1.48 16 23 C -0.06 -1.05 6.27 -104.95 -0.66 -1.71 16 24 C -0.06 -0.94 9.85 -39.37 -0.39 -1.33 16 25 C -0.15 -1.86 10.03 -39.57 -0.40 -2.25 16 26 C -0.10 -1.16 10.01 -39.57 -0.40 -1.55 16 27 C -0.13 -1.54 9.97 -39.43 -0.39 -1.94 16 28 C 0.09 1.26 6.79 -83.97 -0.57 0.69 16 29 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.06 0.57 8.14 -51.94 -0.42 0.14 16 33 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.10 0.96 8.11 -51.93 -0.42 0.54 16 35 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.19 2.71 4.99 -52.49 -0.26 2.45 16 37 H 0.09 1.71 8.09 -51.92 -0.42 1.29 16 38 H 0.07 1.59 8.14 -51.93 -0.42 1.16 16 39 H 0.39 9.85 6.60 45.56 0.30 10.15 16 40 H 0.27 6.30 8.31 -40.82 -0.34 5.96 16 41 H 0.07 1.35 6.28 -51.93 -0.33 1.02 16 42 H 0.08 1.62 8.09 -51.93 -0.42 1.20 16 43 H 0.13 2.23 7.45 -52.49 -0.39 1.84 16 44 H 0.12 1.22 8.06 -52.48 -0.42 0.80 16 45 H 0.12 1.01 8.06 -52.48 -0.42 0.58 16 46 H 0.12 1.11 8.06 -52.48 -0.42 0.68 16 LS Contribution 387.78 15.07 5.84 5.84 Total: -1.00 -29.94 387.78 -8.96 -38.90 By element: Atomic # 1 Polarization: 19.23 SS G_CDS: -5.71 Total: 13.51 kcal Atomic # 6 Polarization: 5.66 SS G_CDS: -2.97 Total: 2.69 kcal Atomic # 7 Polarization: -41.70 SS G_CDS: -0.34 Total: -42.04 kcal Atomic # 8 Polarization: -32.11 SS G_CDS: -0.76 Total: -32.88 kcal Atomic # 14 Polarization: 18.98 SS G_CDS: -5.02 Total: 13.96 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -29.94 -8.96 -38.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193979610.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.482 kcal (2) G-P(sol) polarization free energy of solvation -29.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds