Wall clock time and date at job start Wed Apr 1 2020 02:10:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42905 * 113.99757 * 2 1 4 4 C 1.52999 * 109.46724 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.47099 * 179.97438 * 4 3 2 6 6 C 1.35466 * 124.79284 * 265.02721 * 5 4 3 7 7 C 1.36370 * 109.77195 * 179.97438 * 6 5 4 8 8 C 1.46909 * 126.76718 * 180.02562 * 7 6 5 9 9 O 1.21679 * 120.00120 * 180.02562 * 8 7 6 10 10 N 1.34775 * 120.00454 * 0.02562 * 8 7 6 11 11 C 1.47578 * 134.49450 * 179.97438 * 10 8 7 12 12 C 1.53950 * 86.11711 * 204.63842 * 11 10 8 13 13 O 1.42905 * 113.73786 * 90.74298 * 12 11 10 14 14 C 1.50702 * 113.74361 * 221.94119 * 12 11 10 15 15 H 1.07997 * 119.99716 * 358.07712 * 14 12 11 16 16 C 1.37877 * 119.99683 * 178.07946 * 14 12 11 17 17 N 1.31508 * 120.00243 * 359.97438 * 16 14 12 18 18 Si 1.86800 * 119.99629 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.47107 * 0.02562 * 18 16 14 20 20 H 1.48506 * 109.47073 * 119.99658 * 18 16 14 21 21 H 1.48494 * 109.47295 * 239.99842 * 18 16 14 22 22 C 1.47930 * 134.50005 * 0.02562 * 10 8 7 23 23 C 1.47440 * 106.45990 * 0.26174 * 7 6 5 24 24 C 1.39288 * 134.00143 * 180.59229 * 23 7 6 25 25 C 1.37751 * 119.66581 * 179.55341 * 24 23 7 26 26 C 1.38745 * 120.30625 * 359.64381 * 25 24 23 27 27 C 1.37762 * 120.63561 * 0.02562 * 26 25 24 28 28 C 1.37969 * 124.78026 * 84.98698 * 5 4 3 29 29 H 1.08999 * 109.47099 * 300.00660 * 1 2 3 30 30 H 1.09005 * 109.46871 * 60.00107 * 1 2 3 31 31 H 1.08996 * 109.47373 * 180.02562 * 1 2 3 32 32 H 1.08989 * 109.47399 * 60.00148 * 3 2 1 33 33 H 1.08998 * 109.47327 * 299.99254 * 3 2 1 34 34 H 1.09005 * 109.47025 * 60.00139 * 4 3 2 35 35 H 1.08994 * 109.47564 * 299.99981 * 4 3 2 36 36 H 1.08000 * 125.11122 * 359.96144 * 6 5 4 37 37 H 1.09007 * 113.76850 * 90.34613 * 11 10 8 38 38 H 1.08993 * 113.77344 * 318.94486 * 11 10 8 39 39 H 0.96696 * 114.00036 * 181.92461 * 13 12 11 40 40 H 0.97001 * 119.99758 * 179.97438 * 17 16 14 41 41 H 1.09003 * 113.86941 * 41.08934 * 22 10 8 42 42 H 1.09003 * 113.76390 * 269.60255 * 22 10 8 43 43 H 1.07995 * 120.16349 * 359.20316 * 24 23 7 44 44 H 1.08004 * 119.84166 * 179.67688 * 25 24 23 45 45 H 1.08003 * 119.68500 * 180.02562 * 26 25 24 46 46 H 1.08003 * 120.03826 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 4.1313 2.5230 0.0000 6 6 4.5342 3.1892 -1.1085 7 6 5.0413 4.4054 -0.7570 8 6 5.5825 5.4276 -1.6629 9 8 6.0062 6.4759 -1.2134 10 7 5.6098 5.2042 -2.9917 11 6 6.0658 5.9795 -4.1617 12 6 5.0664 5.1388 -4.9768 13 8 3.7651 5.7222 -5.0696 14 6 5.6022 4.6829 -6.3096 15 1 6.5922 4.9791 -6.6234 16 6 4.8284 3.8879 -7.1282 17 7 3.6230 3.5270 -6.7458 18 14 5.4922 3.3234 -8.7805 19 1 6.8630 3.8613 -8.9731 20 1 5.5339 1.8394 -8.8164 21 1 4.6080 3.8202 -9.8651 22 6 5.1938 4.0838 -3.8635 23 6 4.9447 4.4896 0.7118 24 6 5.2797 5.4639 1.6492 25 6 5.0480 5.2310 2.9870 26 6 4.4772 4.0362 3.4011 27 6 4.1347 3.0668 2.4841 28 6 4.3606 3.2830 1.1285 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.6886 1.8464 0.8899 33 1 1.6887 1.8464 -0.8900 34 1 3.8574 0.6436 -0.8892 35 1 3.8567 0.6440 0.8908 36 1 4.4645 2.8136 -2.1187 37 1 7.1080 5.8022 -4.4271 38 1 5.8121 7.0384 -4.1130 39 1 3.1263 5.1833 -5.5559 40 1 3.0785 2.9680 -7.3219 41 1 4.2447 3.6308 -3.5769 42 1 5.9802 3.3503 -4.0414 43 1 5.7240 6.3947 1.3293 44 1 5.3115 5.9823 3.7168 45 1 4.2996 3.8643 4.4525 46 1 3.6912 2.1401 2.8172 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000193979610.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:10:15 Heat of formation + Delta-G solvation = -42.657146 kcal Electronic energy + Delta-G solvation = -30110.173021 eV Core-core repulsion = 25966.380783 eV Total energy + Delta-G solvation = -4143.792238 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.64733 -40.95414 -39.09497 -38.76994 -38.03684 -35.78961 -34.43955 -34.14254 -31.76355 -30.98425 -30.04634 -29.23860 -27.40914 -27.11888 -26.78562 -24.57179 -23.95863 -23.09153 -21.96264 -21.24230 -20.00407 -19.26765 -18.34128 -18.07524 -17.50494 -17.13261 -16.98673 -16.84010 -16.56167 -16.51235 -16.20630 -15.96480 -15.80025 -15.26837 -14.96348 -14.87232 -14.75000 -14.41601 -14.20351 -13.95820 -13.72457 -13.62161 -13.41529 -13.30899 -12.82185 -12.76774 -12.62469 -12.47536 -12.43512 -12.24386 -12.18533 -12.17481 -11.94737 -11.39092 -10.95104 -10.80112 -10.68701 -10.63641 -10.23401 -9.58622 -9.29805 -8.74389 -8.25754 -6.42154 -0.04400 0.54101 0.94982 1.42976 1.45953 1.51617 1.61144 1.97712 2.35844 2.42884 2.79536 2.95788 2.97369 3.49235 3.57990 3.65174 3.70953 3.87001 3.87512 4.14193 4.14326 4.18799 4.22172 4.25578 4.45351 4.46476 4.50792 4.54015 4.57199 4.62305 4.63459 4.64870 4.76892 4.79362 4.82587 4.87378 5.02197 5.13816 5.25806 5.43808 5.55424 5.67129 5.69808 5.73793 5.94170 5.96686 6.07493 6.19298 6.63423 6.85881 7.23885 7.31993 7.45701 8.80375 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.009730 B = 0.003548 C = 0.002731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2877.044936 B = 7889.159255 C =10248.543807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.401 6.401 3 C 0.049 3.951 4 C 0.108 3.892 5 N -0.459 5.459 6 C 0.123 3.877 7 C -0.255 4.255 8 C 0.594 3.406 9 O -0.604 6.604 10 N -0.634 5.634 11 C 0.112 3.888 12 C 0.223 3.777 13 O -0.586 6.586 14 C -0.555 4.555 15 H 0.071 0.929 16 C 0.037 3.963 17 N -0.914 5.914 18 Si 0.966 3.034 19 H -0.270 1.270 20 H -0.275 1.275 21 H -0.283 1.283 22 C 0.090 3.910 23 C -0.093 4.093 24 C -0.096 4.096 25 C -0.135 4.135 26 C -0.096 4.096 27 C -0.119 4.119 28 C 0.079 3.921 29 H 0.053 0.947 30 H 0.043 0.957 31 H 0.105 0.895 32 H 0.061 0.939 33 H 0.047 0.953 34 H 0.114 0.886 35 H 0.120 0.880 36 H 0.192 0.808 37 H 0.102 0.898 38 H 0.056 0.944 39 H 0.387 0.613 40 H 0.276 0.724 41 H 0.074 0.926 42 H 0.096 0.904 43 H 0.106 0.894 44 H 0.148 0.852 45 H 0.166 0.834 46 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.602 -10.699 16.678 20.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.320 6.320 3 C -0.029 4.029 4 C -0.013 4.013 5 N -0.141 5.141 6 C -0.009 4.009 7 C -0.266 4.266 8 C 0.388 3.612 9 O -0.489 6.489 10 N -0.366 5.366 11 C -0.010 4.010 12 C 0.182 3.818 13 O -0.398 6.398 14 C -0.593 4.593 15 H 0.089 0.911 16 C -0.164 4.164 17 N -0.554 5.554 18 Si 0.792 3.208 19 H -0.194 1.194 20 H -0.201 1.201 21 H -0.209 1.209 22 C -0.032 4.032 23 C -0.097 4.097 24 C -0.115 4.115 25 C -0.154 4.154 26 C -0.115 4.115 27 C -0.139 4.139 28 C -0.025 4.025 29 H 0.071 0.929 30 H 0.062 0.938 31 H 0.124 0.876 32 H 0.079 0.921 33 H 0.066 0.934 34 H 0.132 0.868 35 H 0.138 0.862 36 H 0.208 0.792 37 H 0.120 0.880 38 H 0.075 0.925 39 H 0.241 0.759 40 H 0.085 0.915 41 H 0.092 0.908 42 H 0.114 0.886 43 H 0.124 0.876 44 H 0.165 0.835 45 H 0.183 0.817 46 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -4.315 -10.264 17.399 20.657 hybrid contribution -0.190 0.034 -1.706 1.717 sum -4.505 -10.229 15.693 19.266 Atomic orbital electron populations 1.22974 0.78873 1.04294 1.00843 1.87762 1.21827 1.26725 1.95638 1.22745 0.93207 0.85495 1.01417 1.21804 0.91967 0.79895 1.07615 1.43690 1.50803 1.15658 1.03989 1.22690 0.94563 0.91121 0.92554 1.19995 1.16508 0.97053 0.93015 1.17365 0.77638 0.85974 0.80188 1.90648 1.52532 1.29211 1.76487 1.50069 1.61197 1.21861 1.03492 1.23451 0.99394 0.96825 0.81329 1.20072 0.81548 0.88339 0.91885 1.86074 1.22940 1.51455 1.79282 1.21730 1.02639 1.31935 1.02991 0.91122 1.25675 0.94877 0.94527 1.01288 1.69458 1.10037 1.36962 1.38936 0.85381 0.78517 0.78000 0.78953 1.19420 1.20057 1.20920 1.24288 0.99138 0.92062 0.87754 1.19042 1.03533 0.95866 0.91257 1.20723 0.99665 0.97841 0.93288 1.21275 1.00804 0.99097 0.94200 1.21251 0.97429 0.92186 1.00623 1.20416 1.04024 1.01885 0.87616 1.18522 1.03228 0.91121 0.89591 0.92854 0.93831 0.87626 0.92050 0.93432 0.86757 0.86162 0.79170 0.88014 0.92521 0.75858 0.91458 0.90790 0.88581 0.87628 0.83473 0.81680 0.82990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 11.01 113.37 1.25 1.60 16 2 O -0.40 -7.29 10.70 -148.98 -1.59 -8.88 16 3 C 0.05 0.89 6.26 71.98 0.45 1.34 16 4 C 0.11 1.88 6.32 86.38 0.55 2.43 16 5 N -0.46 -11.54 2.74 -515.29 -1.41 -12.95 16 6 C 0.12 3.84 10.39 83.70 0.87 4.70 16 7 C -0.26 -9.90 6.27 -19.02 -0.12 -10.02 16 8 C 0.59 27.39 8.03 86.51 0.69 28.08 16 9 O -0.60 -31.41 16.89 -4.28 -0.07 -31.48 16 10 N -0.63 -28.16 3.62 -843.84 -3.05 -31.21 16 11 C 0.11 5.09 8.23 86.49 0.71 5.80 16 12 C 0.22 10.62 1.40 -10.89 -0.02 10.61 16 13 O -0.59 -30.41 13.48 -148.98 -2.01 -32.42 16 14 C -0.55 -27.21 8.61 25.60 0.22 -26.99 16 15 H 0.07 3.41 7.81 -2.91 -0.02 3.38 16 16 C 0.04 1.78 5.39 84.66 0.46 2.24 16 17 N -0.91 -44.27 11.20 21.45 0.24 -44.03 16 18 Si 0.97 38.48 29.54 68.60 2.03 40.51 16 19 H -0.27 -10.67 7.11 99.48 0.71 -9.96 16 20 H -0.28 -10.63 7.11 99.48 0.71 -9.92 16 21 H -0.28 -11.34 7.11 99.48 0.71 -10.64 16 22 C 0.09 3.74 6.56 86.40 0.57 4.30 16 23 C -0.09 -3.26 6.27 -20.08 -0.13 -3.38 16 24 C -0.10 -3.17 9.85 22.41 0.22 -2.95 16 25 C -0.14 -3.16 10.03 22.28 0.22 -2.93 16 26 C -0.10 -1.76 10.01 22.28 0.22 -1.54 16 27 C -0.12 -2.39 9.97 22.37 0.22 -2.16 16 28 C 0.08 2.14 6.79 38.91 0.26 2.41 16 29 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.04 0.60 8.14 -2.38 -0.02 0.58 16 31 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.11 1.81 8.11 -2.38 -0.02 1.79 16 35 H 0.12 1.60 8.14 -2.39 -0.02 1.59 16 36 H 0.19 5.54 4.99 -2.91 -0.01 5.53 16 37 H 0.10 4.19 8.09 -2.38 -0.02 4.17 16 38 H 0.06 2.67 8.14 -2.39 -0.02 2.66 16 39 H 0.39 20.05 6.60 -74.06 -0.49 19.56 16 40 H 0.28 12.61 8.31 -92.71 -0.77 11.84 16 41 H 0.07 2.96 6.28 -2.39 -0.01 2.94 16 42 H 0.10 3.73 8.09 -2.39 -0.02 3.71 16 43 H 0.11 3.92 7.45 -2.91 -0.02 3.89 16 44 H 0.15 2.60 8.06 -2.91 -0.02 2.57 16 45 H 0.17 1.70 8.06 -2.91 -0.02 1.67 16 46 H 0.15 2.00 8.06 -2.91 -0.02 1.97 16 Total: -1.00 -67.34 387.78 1.31 -66.03 By element: Atomic # 1 Polarization: 40.39 SS G_CDS: 0.52 Total: 40.92 kcal Atomic # 6 Polarization: 6.86 SS G_CDS: 6.66 Total: 13.52 kcal Atomic # 7 Polarization: -83.97 SS G_CDS: -4.22 Total: -88.19 kcal Atomic # 8 Polarization: -69.11 SS G_CDS: -3.68 Total: -72.78 kcal Atomic # 14 Polarization: 38.48 SS G_CDS: 2.03 Total: 40.51 kcal Total: -67.34 1.31 -66.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193979610.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.376 kcal (2) G-P(sol) polarization free energy of solvation -67.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds