Wall clock time and date at job start Wed Apr 1 2020 02:17:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34719 * 116.99544 * 2 1 4 4 O 1.21465 * 120.00111 * 359.97438 * 3 2 1 5 5 C 1.47757 * 119.99672 * 180.27956 * 3 2 1 6 6 C 1.39719 * 119.98373 * 359.43975 * 5 3 2 7 7 C 1.37640 * 120.02155 * 179.76826 * 6 5 3 8 8 C 1.39888 * 119.97620 * 0.50967 * 7 6 5 9 9 C 1.47264 * 120.01460 * 179.76349 * 8 7 6 10 10 C 1.34732 * 120.00175 * 38.26744 * 9 8 7 11 11 C 1.46629 * 119.99711 * 15.74419 * 10 9 8 12 12 O 1.21669 * 120.00047 * 7.40746 * 11 10 9 13 13 N 1.34780 * 119.99637 * 187.41159 * 11 10 9 14 14 C 1.46963 * 120.59147 * 354.61278 * 13 11 10 15 15 C 1.53813 * 108.39744 * 124.75905 * 14 13 11 16 16 N 1.46969 * 108.57870 * 49.63513 * 15 14 13 17 17 C 1.36941 * 120.59582 * 124.67018 * 16 15 14 18 18 H 1.07993 * 119.99657 * 323.47499 * 17 16 15 19 19 C 1.38811 * 120.00070 * 143.47439 * 17 16 15 20 20 N 1.31613 * 119.99988 * 172.31645 * 19 17 16 21 21 Si 1.86808 * 119.99989 * 352.31601 * 19 17 16 22 22 H 1.48500 * 109.47106 * 87.33929 * 21 19 17 23 23 H 1.48500 * 109.46990 * 207.33722 * 21 19 17 24 24 H 1.48503 * 109.46748 * 327.33900 * 21 19 17 25 25 C 1.46968 * 118.80881 * 304.64809 * 16 15 14 26 26 C 1.46962 * 120.59120 * 174.89119 * 13 11 10 27 27 C 1.39886 * 119.96306 * 359.74771 * 8 7 6 28 28 C 1.37632 * 119.98096 * 359.97438 * 27 8 7 29 29 H 1.09000 * 109.46589 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47105 * 300.00095 * 1 2 3 31 31 H 1.08997 * 109.47267 * 60.00790 * 1 2 3 32 32 H 1.08007 * 119.98918 * 0.02752 * 6 5 3 33 33 H 1.08000 * 120.00988 * 180.28452 * 7 6 5 34 34 H 1.08004 * 120.00032 * 218.26514 * 9 8 7 35 35 H 1.07992 * 119.99886 * 195.73899 * 10 9 8 36 36 H 1.09002 * 109.60832 * 244.53881 * 14 13 11 37 37 H 1.08997 * 109.61348 * 5.05405 * 14 13 11 38 38 H 1.08997 * 109.74433 * 289.85133 * 15 14 13 39 39 H 1.08997 * 109.53755 * 169.29440 * 15 14 13 40 40 H 0.97005 * 120.00373 * 180.02562 * 20 19 17 41 41 H 1.08997 * 109.61111 * 295.47641 * 25 16 15 42 42 H 1.09005 * 109.74957 * 175.05970 * 25 16 15 43 43 H 1.09002 * 109.61250 * 354.94978 * 26 13 11 44 44 H 1.09003 * 109.60900 * 115.45991 * 26 13 11 45 45 H 1.07997 * 120.00911 * 180.02562 * 27 8 7 46 46 H 1.08002 * 119.99085 * 179.97438 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2004 0.0000 4 8 1.4019 2.2191 -0.0005 5 6 3.5391 1.2778 -0.0062 6 6 4.2998 0.1058 -0.0003 7 6 5.6743 0.1770 -0.0109 8 6 6.3097 1.4232 -0.0169 9 6 7.7803 1.5003 -0.0230 10 6 8.4981 0.6188 -0.7461 11 6 7.8430 -0.1841 -1.7835 12 8 6.6854 0.0386 -2.0848 13 7 8.5232 -1.1689 -2.4033 14 6 9.9537 -1.3732 -2.1353 15 6 10.1606 -2.8302 -1.6880 16 7 9.4865 -3.7151 -2.6484 17 6 10.1775 -4.7157 -3.2782 18 1 11.2045 -4.5595 -3.5734 19 6 9.5580 -5.9306 -3.5370 20 7 10.1667 -6.8361 -4.2729 21 14 7.8602 -6.2804 -2.8406 22 1 6.8265 -5.7721 -3.7777 23 1 7.6901 -7.7449 -2.6630 24 1 7.7145 -5.6022 -1.5275 25 6 8.0572 -3.5072 -2.9206 26 6 7.8491 -2.0538 -3.3637 27 6 5.5473 2.5961 -0.0174 28 6 4.1729 2.5230 -0.0126 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5137 -0.8900 32 1 3.8090 -0.8563 0.0084 33 1 6.2621 -0.7291 -0.0110 34 1 8.2834 2.2635 0.5521 35 1 9.5559 0.5036 -0.5617 36 1 10.5269 -1.1813 -3.0423 37 1 10.2780 -0.6966 -1.3446 38 1 9.7337 -2.9748 -0.6955 39 1 11.2264 -3.0573 -1.6672 40 1 9.7337 -7.6850 -4.4541 41 1 7.4807 -3.7000 -2.0159 42 1 7.7312 -4.1814 -3.7126 43 1 6.7832 -1.8267 -3.3845 44 1 8.2758 -1.9092 -4.3562 45 1 6.0370 3.5586 -0.0224 46 1 3.5842 3.4285 -0.0125 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000255197796.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:17:40 Heat of formation + Delta-G solvation = -40.313636 kcal Electronic energy + Delta-G solvation = -29818.393478 eV Core-core repulsion = 25674.702862 eV Total energy + Delta-G solvation = -4143.690616 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.71241 -41.25949 -39.80624 -38.52915 -37.56275 -35.66600 -34.99055 -33.51837 -32.45361 -32.05688 -31.17349 -29.04850 -28.53617 -26.11084 -25.32220 -24.73056 -23.67586 -23.21409 -22.19230 -21.40177 -19.65642 -19.14534 -18.89847 -18.34707 -18.03875 -17.45544 -17.12186 -17.02425 -16.42645 -15.99889 -15.99009 -15.85201 -15.49446 -15.32643 -15.03815 -14.60037 -14.54422 -14.52274 -14.36820 -14.17131 -13.94807 -13.88050 -13.58551 -13.40628 -13.09566 -12.88762 -12.66883 -12.38359 -12.26932 -12.10980 -11.99244 -11.89634 -11.79208 -11.70921 -11.61182 -11.04359 -10.86423 -10.69427 -10.03312 -9.67770 -9.23973 -8.73325 -8.18713 -5.64893 -0.71117 0.41236 0.51672 1.27466 1.37707 1.45643 1.51409 1.64989 2.07014 2.33529 2.37053 2.84105 3.10426 3.25512 3.56464 3.66618 3.75115 3.86597 3.95217 4.09094 4.13403 4.22818 4.26585 4.26888 4.33140 4.39655 4.40606 4.51999 4.57491 4.62916 4.68393 4.69961 4.79952 4.85442 4.95335 4.99266 5.04063 5.14778 5.20274 5.21637 5.28940 5.40841 5.50041 5.63317 5.85874 5.89683 6.13310 6.54387 6.57532 6.88139 7.22865 7.55039 7.99655 9.00164 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.012884 B = 0.002923 C = 0.002461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2172.641203 B = 9577.471780 C =11373.367899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.362 6.362 3 C 0.510 3.490 4 O -0.535 6.535 5 C -0.142 4.142 6 C -0.083 4.083 7 C -0.067 4.067 8 C -0.035 4.035 9 C -0.023 4.023 10 C -0.206 4.206 11 C 0.527 3.473 12 O -0.571 6.571 13 N -0.599 5.599 14 C 0.095 3.905 15 C 0.128 3.872 16 N -0.621 5.621 17 C -0.248 4.248 18 H 0.057 0.943 19 C -0.028 4.028 20 N -0.959 5.959 21 Si 0.951 3.049 22 H -0.276 1.276 23 H -0.312 1.312 24 H -0.261 1.261 25 C 0.110 3.890 26 C 0.108 3.892 27 C -0.108 4.108 28 C -0.071 4.071 29 H 0.131 0.869 30 H 0.068 0.932 31 H 0.063 0.937 32 H 0.132 0.868 33 H 0.112 0.888 34 H 0.188 0.812 35 H 0.174 0.826 36 H 0.068 0.932 37 H 0.130 0.870 38 H 0.039 0.961 39 H 0.080 0.920 40 H 0.262 0.738 41 H 0.031 0.969 42 H 0.059 0.941 43 H 0.084 0.916 44 H 0.063 0.937 45 H 0.167 0.833 46 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.989 20.621 13.111 26.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.278 6.278 3 C 0.357 3.643 4 O -0.427 6.427 5 C -0.143 4.143 6 C -0.101 4.101 7 C -0.085 4.085 8 C -0.035 4.035 9 C -0.042 4.042 10 C -0.226 4.226 11 C 0.320 3.680 12 O -0.453 6.453 13 N -0.331 5.331 14 C -0.028 4.028 15 C 0.002 3.998 16 N -0.346 5.346 17 C -0.378 4.378 18 H 0.074 0.926 19 C -0.224 4.224 20 N -0.605 5.605 21 Si 0.781 3.219 22 H -0.203 1.203 23 H -0.240 1.240 24 H -0.185 1.185 25 C -0.015 4.015 26 C -0.017 4.017 27 C -0.126 4.126 28 C -0.090 4.090 29 H 0.149 0.851 30 H 0.086 0.914 31 H 0.081 0.919 32 H 0.150 0.850 33 H 0.130 0.870 34 H 0.205 0.795 35 H 0.192 0.808 36 H 0.087 0.913 37 H 0.147 0.853 38 H 0.057 0.943 39 H 0.098 0.902 40 H 0.071 0.929 41 H 0.049 0.951 42 H 0.077 0.923 43 H 0.102 0.898 44 H 0.081 0.919 45 H 0.185 0.815 46 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -9.801 20.823 12.878 26.372 hybrid contribution -1.043 -1.208 -0.510 1.676 sum -10.844 19.615 12.367 25.599 Atomic orbital electron populations 1.23595 0.74205 1.05841 1.02789 1.86569 1.25422 1.32059 1.83788 1.21506 0.89633 0.81388 0.71752 1.90780 1.67426 1.36724 1.47779 1.19226 0.88411 0.95820 1.10813 1.21274 0.94078 0.97814 0.96950 1.21150 0.93897 0.97380 0.96101 1.19539 0.94694 0.93103 0.96211 1.22826 0.90574 0.95517 0.95304 1.23338 1.02927 0.98514 0.97787 1.19234 0.85874 0.79841 0.83089 1.90844 1.18253 1.69413 1.66835 1.48082 1.11540 1.30897 1.42539 1.22591 0.79487 0.98007 1.02755 1.21656 0.97878 0.88992 0.91224 1.44370 1.05921 1.36174 1.48185 1.18822 0.97318 0.90640 1.31034 0.92552 1.26107 1.01781 0.95405 0.99088 1.69869 1.40423 1.08262 1.41929 0.85894 0.81015 0.75136 0.79835 1.20275 1.24050 1.18521 1.21748 0.86178 0.95371 0.98244 1.21865 0.98162 0.89559 0.92124 1.21488 0.92455 0.98960 0.99675 1.21260 0.95374 0.96149 0.96179 0.85087 0.91363 0.91868 0.84977 0.86974 0.79475 0.80850 0.91323 0.85257 0.94325 0.90206 0.92865 0.95100 0.92252 0.89752 0.91886 0.81512 0.83997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 10.56 113.37 1.20 1.65 16 2 O -0.36 -8.54 9.80 -56.29 -0.55 -9.09 16 3 C 0.51 13.56 7.90 70.34 0.56 14.12 16 4 O -0.54 -15.89 16.12 19.95 0.32 -15.57 16 5 C -0.14 -3.59 5.88 -20.04 -0.12 -3.71 16 6 C -0.08 -2.12 9.60 22.49 0.22 -1.91 16 7 C -0.07 -1.67 6.66 22.53 0.15 -1.52 16 8 C -0.04 -0.71 4.64 -20.11 -0.09 -0.80 16 9 C -0.02 -0.31 9.81 23.84 0.23 -0.08 16 10 C -0.21 -3.41 9.16 23.66 0.22 -3.19 16 11 C 0.53 14.14 6.44 86.43 0.56 14.69 16 12 O -0.57 -18.80 11.82 -4.25 -0.05 -18.85 16 13 N -0.60 -17.46 2.94 -821.96 -2.42 -19.88 16 14 C 0.09 2.33 6.54 86.57 0.57 2.90 16 15 C 0.13 4.17 6.69 86.56 0.58 4.75 16 16 N -0.62 -27.25 2.68 -697.35 -1.87 -29.12 16 17 C -0.25 -13.38 10.04 84.03 0.84 -12.54 16 18 H 0.06 3.31 8.06 -2.91 -0.02 3.28 16 19 C -0.03 -1.62 5.40 84.86 0.46 -1.16 16 20 N -0.96 -59.06 13.97 21.65 0.30 -58.75 16 21 Si 0.95 46.10 24.30 68.60 1.67 47.76 16 22 H -0.28 -12.77 6.58 99.48 0.65 -12.12 16 23 H -0.31 -15.42 7.11 99.48 0.71 -14.71 16 24 H -0.26 -12.08 6.29 99.48 0.63 -11.46 16 25 C 0.11 4.55 4.29 86.41 0.37 4.92 16 26 C 0.11 3.77 6.58 86.41 0.57 4.34 16 27 C -0.11 -1.90 9.77 22.53 0.22 -1.68 16 28 C -0.07 -1.53 9.57 22.49 0.22 -1.32 16 29 H 0.13 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.13 3.26 7.59 -2.91 -0.02 3.24 16 33 H 0.11 2.99 6.75 -2.91 -0.02 2.97 16 34 H 0.19 0.82 8.06 -2.91 -0.02 0.79 16 35 H 0.17 1.64 5.86 -2.91 -0.02 1.63 16 36 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 37 H 0.13 1.91 5.29 -2.39 -0.01 1.90 16 38 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.08 2.55 7.93 -2.39 -0.02 2.53 16 40 H 0.26 15.43 8.31 -92.70 -0.77 14.66 16 41 H 0.03 1.29 6.81 -2.39 -0.02 1.27 16 42 H 0.06 2.70 4.58 -2.38 -0.01 2.69 16 43 H 0.08 2.96 7.02 -2.39 -0.02 2.94 16 44 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 45 H 0.17 1.67 8.06 -2.91 -0.02 1.65 16 46 H 0.14 2.76 7.64 -2.91 -0.02 2.74 16 Total: -1.00 -76.65 371.92 5.01 -71.63 By element: Atomic # 1 Polarization: 11.52 SS G_CDS: 0.87 Total: 12.40 kcal Atomic # 6 Polarization: 12.74 SS G_CDS: 6.74 Total: 19.47 kcal Atomic # 7 Polarization: -103.77 SS G_CDS: -3.98 Total: -107.76 kcal Atomic # 8 Polarization: -43.23 SS G_CDS: -0.28 Total: -43.51 kcal Atomic # 14 Polarization: 46.10 SS G_CDS: 1.67 Total: 47.76 kcal Total: -76.65 5.01 -71.63 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255197796.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.318 kcal (2) G-P(sol) polarization free energy of solvation -76.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds