Wall clock time and date at job start Wed Apr 1 2020 02:21:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45207 * 1 3 3 C 1.34225 * 117.00220 * 2 1 4 4 O 1.20830 * 119.99893 * 0.02562 * 3 2 1 5 5 C 1.50696 * 120.00168 * 179.97438 * 3 2 1 6 6 H 1.09002 * 109.46540 * 60.00608 * 5 3 2 7 7 C 1.52998 * 109.47522 * 300.00522 * 5 3 2 8 8 C 1.50697 * 109.47439 * 174.99704 * 7 5 3 9 9 C 1.34243 * 126.50247 * 265.02943 * 8 7 5 10 10 N 1.36827 * 109.92901 * 179.97438 * 9 8 7 11 11 H 0.97003 * 125.06122 * 180.02562 * 10 9 8 12 12 C 1.37685 * 109.87448 * 359.97438 * 10 9 8 13 13 C 1.39130 * 133.50113 * 180.02562 * 12 10 9 14 14 C 1.37749 * 119.77561 * 179.97438 * 13 12 10 15 15 C 1.38835 * 120.66656 * 359.97438 * 14 13 12 16 16 C 1.36629 * 120.52707 * 0.02562 * 15 14 13 17 17 C 1.39631 * 119.76688 * 359.69162 * 16 15 14 18 18 N 1.46496 * 109.47365 * 179.97438 * 5 3 2 19 19 C 1.34777 * 120.00258 * 275.00798 * 18 5 3 20 20 O 1.21279 * 120.00166 * 359.97438 * 19 18 5 21 21 C 1.50706 * 119.99762 * 179.97438 * 19 18 5 22 22 C 1.53002 * 109.46925 * 179.97438 * 21 19 18 23 23 C 1.50696 * 109.47300 * 180.02562 * 22 21 19 24 24 H 1.07999 * 119.99822 * 0.02562 * 23 22 21 25 25 C 1.37876 * 120.00339 * 179.97438 * 23 22 21 26 26 N 1.31514 * 120.00355 * 179.97438 * 25 23 22 27 27 Si 1.86803 * 119.99771 * 0.02562 * 25 23 22 28 28 H 1.48498 * 109.47174 * 89.99890 * 27 25 23 29 29 H 1.48506 * 109.46994 * 210.00195 * 27 25 23 30 30 H 1.48504 * 109.46913 * 329.99640 * 27 25 23 31 31 H 1.08998 * 109.46968 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.46672 * 299.99791 * 1 2 3 33 33 H 1.09002 * 109.47000 * 59.99622 * 1 2 3 34 34 H 1.08998 * 109.47261 * 294.99944 * 7 5 3 35 35 H 1.09000 * 109.47285 * 54.99698 * 7 5 3 36 36 H 1.08001 * 125.03442 * 359.97438 * 9 8 7 37 37 H 1.07994 * 120.11389 * 359.94132 * 13 12 10 38 38 H 1.07992 * 119.66766 * 179.97438 * 14 13 12 39 39 H 1.08000 * 119.73761 * 179.97438 * 15 14 13 40 40 H 1.07998 * 120.11536 * 180.02562 * 16 15 14 41 41 H 0.96999 * 119.99694 * 95.00188 * 18 5 3 42 42 H 1.09000 * 109.47318 * 299.99141 * 21 19 18 43 43 H 1.09000 * 109.47161 * 59.99772 * 21 19 18 44 44 H 1.09004 * 109.46930 * 299.99901 * 22 21 19 45 45 H 1.09004 * 109.47059 * 59.99503 * 22 21 19 46 46 H 0.96991 * 119.99891 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 0.0006 6 1 3.9563 0.7805 -0.8892 7 6 4.1130 0.5814 1.2501 8 6 5.6185 0.5519 1.1903 9 6 6.3800 -0.4545 0.7326 10 7 7.7032 -0.1215 0.8341 11 1 8.4428 -0.6890 0.5658 12 6 7.8287 1.1394 1.3727 13 6 8.9205 1.9436 1.6838 14 6 8.7170 3.1929 2.2274 15 6 7.4318 3.6596 2.4682 16 6 6.3455 2.8864 2.1703 17 6 6.5284 1.6192 1.6131 18 7 3.9818 2.6796 -0.0002 19 6 4.0757 3.3540 -1.1633 20 8 3.8167 2.7978 -2.2094 21 6 4.5025 4.7994 -1.1638 22 6 4.5278 5.3231 -2.6012 23 6 4.9552 6.7681 -2.6020 24 1 5.1862 7.2634 -1.6704 25 6 5.0524 7.4578 -3.7919 26 7 5.4249 8.7190 -3.7925 27 14 4.6536 6.6009 -5.4032 28 1 3.2105 6.7700 -5.7098 29 1 5.4648 7.1971 -6.4949 30 1 4.9686 5.1544 -5.2858 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8901 33 1 -0.3633 0.5139 -0.8900 34 1 3.7953 1.1285 2.1376 35 1 3.7312 -0.4385 1.2960 36 1 6.0038 -1.3885 0.3421 37 1 9.9241 1.5895 1.5003 38 1 9.5657 3.8156 2.4686 39 1 7.2897 4.6413 2.8953 40 1 5.3487 3.2562 2.3600 41 1 4.1892 3.1244 0.8365 42 1 3.7977 5.3866 -0.5752 43 1 5.4984 4.8843 -0.7290 44 1 5.2328 4.7357 -3.1896 45 1 3.5320 5.2380 -3.0365 46 1 5.4936 9.2040 -4.6296 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293262141.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:21:17 Heat of formation + Delta-G solvation = -95.533686 kcal Electronic energy + Delta-G solvation = -30199.582662 eV Core-core repulsion = 26053.497526 eV Total energy + Delta-G solvation = -4146.085137 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.26838 -41.68639 -40.48626 -37.79085 -37.63247 -36.69628 -35.55075 -33.73789 -33.18916 -31.75693 -30.20310 -29.67749 -28.47860 -27.68674 -25.44162 -23.69291 -23.50553 -22.62913 -21.84370 -21.32478 -20.29659 -19.30080 -18.81830 -18.70222 -17.99876 -17.72783 -17.29766 -17.16288 -16.74285 -16.28506 -16.26309 -16.19745 -15.32475 -15.01181 -14.90754 -14.78424 -14.69543 -14.56270 -14.45071 -14.18248 -13.87006 -13.52959 -13.41578 -13.20943 -12.97394 -12.93480 -12.69783 -12.48666 -12.19864 -12.12627 -11.99328 -11.83830 -11.80531 -11.79547 -11.61155 -11.41779 -10.86404 -10.78961 -10.47293 -10.29781 -9.05898 -8.50444 -8.32027 -6.34601 0.28327 0.77976 1.08599 1.31432 1.32335 1.33347 1.48150 1.76486 1.87020 2.25918 2.34040 2.35906 3.03325 3.05314 3.65216 3.84139 3.86225 3.89663 4.01529 4.15652 4.21909 4.30256 4.32617 4.33210 4.36383 4.45265 4.51356 4.54527 4.68526 4.71151 4.87025 4.88218 4.95481 5.00422 5.07621 5.21877 5.30052 5.30850 5.37384 5.41564 5.59516 5.65003 5.78045 5.83527 5.89237 6.23002 6.32420 6.43596 6.66191 6.70780 6.78432 7.20106 7.30323 8.83790 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.007446 B = 0.004170 C = 0.002976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3759.757988 B = 6712.673410 C = 9406.911805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.352 6.352 3 C 0.448 3.552 4 O -0.533 6.533 5 C 0.162 3.838 6 H 0.119 0.881 7 C -0.028 4.028 8 C -0.199 4.199 9 C 0.077 3.923 10 N -0.587 5.587 11 H 0.429 0.571 12 C 0.071 3.929 13 C -0.136 4.136 14 C -0.113 4.113 15 C -0.152 4.152 16 C -0.092 4.092 17 C -0.112 4.112 18 N -0.696 5.696 19 C 0.524 3.476 20 O -0.580 6.580 21 C -0.115 4.115 22 C 0.009 3.991 23 C -0.528 4.528 24 H 0.051 0.949 25 C 0.017 3.983 26 N -0.942 5.942 27 Si 0.936 3.064 28 H -0.270 1.270 29 H -0.274 1.274 30 H -0.263 1.263 31 H 0.139 0.861 32 H 0.065 0.935 33 H 0.047 0.953 34 H 0.088 0.912 35 H 0.129 0.871 36 H 0.208 0.792 37 H 0.136 0.864 38 H 0.140 0.860 39 H 0.133 0.867 40 H 0.126 0.874 41 H 0.413 0.587 42 H 0.097 0.903 43 H 0.102 0.898 44 H 0.011 0.989 45 H 0.004 0.996 46 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.400 -26.326 16.964 31.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.268 6.268 3 C 0.290 3.710 4 O -0.422 6.422 5 C 0.055 3.945 6 H 0.137 0.863 7 C -0.066 4.066 8 C -0.206 4.206 9 C -0.051 4.051 10 N -0.191 5.191 11 H 0.268 0.732 12 C -0.036 4.036 13 C -0.157 4.157 14 C -0.132 4.132 15 C -0.171 4.171 16 C -0.111 4.111 17 C -0.117 4.117 18 N -0.350 5.350 19 C 0.313 3.687 20 O -0.459 6.459 21 C -0.155 4.155 22 C -0.029 4.029 23 C -0.566 4.566 24 H 0.069 0.931 25 C -0.181 4.181 26 N -0.582 5.582 27 Si 0.760 3.240 28 H -0.195 1.195 29 H -0.200 1.200 30 H -0.187 1.187 31 H 0.157 0.843 32 H 0.084 0.916 33 H 0.066 0.934 34 H 0.107 0.893 35 H 0.147 0.853 36 H 0.225 0.775 37 H 0.153 0.847 38 H 0.157 0.843 39 H 0.151 0.849 40 H 0.143 0.857 41 H 0.252 0.748 42 H 0.115 0.885 43 H 0.120 0.880 44 H 0.029 0.971 45 H 0.023 0.977 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.113 -26.395 16.076 30.925 hybrid contribution 0.017 0.579 -0.773 0.966 sum 1.131 -25.816 15.302 30.032 Atomic orbital electron populations 1.23555 0.75024 1.05872 1.02110 1.86471 1.24708 1.31953 1.83622 1.24817 0.93162 0.81649 0.71412 1.90685 1.67662 1.37806 1.46043 1.20712 0.85086 0.84294 1.04442 0.86317 1.20066 0.89987 1.03009 0.93543 1.19994 0.93924 0.94884 1.11843 1.22244 0.81775 1.00798 1.00274 1.41782 1.08254 1.13995 1.55040 0.73185 1.18483 0.95691 0.87633 1.01798 1.20314 0.97037 0.94650 1.03652 1.21107 0.97823 0.95276 0.99013 1.20935 0.92706 1.00699 1.02780 1.20409 0.99301 0.92720 0.98628 1.19326 0.92743 0.95530 1.04090 1.45725 1.68354 1.11421 1.09469 1.21164 0.74860 0.89493 0.83176 1.90615 1.51218 1.70825 1.33290 1.21470 1.03568 0.90278 1.00195 1.19187 0.95928 0.94359 0.93429 1.21389 1.45267 0.95704 0.94220 0.93120 1.25754 0.94495 0.95263 1.02596 1.70015 1.49530 1.10456 1.28241 0.85872 0.78845 0.79612 0.79654 1.19546 1.19956 1.18700 0.84265 0.91646 0.93390 0.89333 0.85303 0.77496 0.84655 0.84258 0.84942 0.85666 0.74810 0.88483 0.88023 0.97078 0.97724 0.92329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 10.56 113.37 1.20 1.64 16 2 O -0.35 -7.28 10.37 -51.36 -0.53 -7.81 16 3 C 0.45 12.00 7.29 71.23 0.52 12.52 16 4 O -0.53 -18.63 16.07 21.95 0.35 -18.28 16 5 C 0.16 3.83 2.47 44.24 0.11 3.94 16 6 H 0.12 3.02 7.58 -2.39 -0.02 3.01 16 7 C -0.03 -0.42 5.25 29.85 0.16 -0.26 16 8 C -0.20 -3.44 5.32 -18.63 -0.10 -3.54 16 9 C 0.08 1.00 11.73 83.00 0.97 1.97 16 10 N -0.59 -8.38 6.07 -187.61 -1.14 -9.52 16 11 H 0.43 3.50 8.96 -92.71 -0.83 2.67 16 12 C 0.07 1.45 7.28 39.03 0.28 1.74 16 13 C -0.14 -2.67 10.08 22.37 0.23 -2.44 16 14 C -0.11 -2.29 10.01 22.30 0.22 -2.06 16 15 C -0.15 -3.26 9.97 22.04 0.22 -3.04 16 16 C -0.09 -2.00 9.25 22.23 0.21 -1.79 16 17 C -0.11 -2.44 6.17 -20.20 -0.12 -2.56 16 18 N -0.70 -20.00 4.16 -446.11 -1.86 -21.85 16 19 C 0.52 20.51 7.66 87.66 0.67 21.18 16 20 O -0.58 -27.05 15.64 -3.03 -0.05 -27.10 16 21 C -0.12 -4.83 5.64 29.85 0.17 -4.66 16 22 C 0.01 0.47 3.33 29.85 0.10 0.57 16 23 C -0.53 -31.70 9.66 25.60 0.25 -31.45 16 24 H 0.05 3.19 7.99 -2.91 -0.02 3.17 16 25 C 0.02 1.02 5.47 84.65 0.46 1.49 16 26 N -0.94 -60.23 13.96 21.45 0.30 -59.93 16 27 Si 0.94 48.26 27.47 68.60 1.88 50.14 16 28 H -0.27 -13.57 7.11 99.48 0.71 -12.87 16 29 H -0.27 -13.41 7.11 99.48 0.71 -12.70 16 30 H -0.26 -13.51 6.54 99.48 0.65 -12.86 16 31 H 0.14 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.06 1.02 8.13 -2.38 -0.02 1.00 16 33 H 0.05 0.93 8.13 -2.39 -0.02 0.91 16 34 H 0.09 1.21 8.14 -2.39 -0.02 1.20 16 35 H 0.13 1.16 7.99 -2.39 -0.02 1.14 16 36 H 0.21 1.00 8.06 -2.91 -0.02 0.98 16 37 H 0.14 2.00 8.06 -2.91 -0.02 1.98 16 38 H 0.14 2.23 8.06 -2.91 -0.02 2.21 16 39 H 0.13 2.45 8.06 -2.91 -0.02 2.43 16 40 H 0.13 2.32 6.66 -2.91 -0.02 2.30 16 41 H 0.41 10.03 6.23 -92.71 -0.58 9.45 16 42 H 0.10 3.84 8.14 -2.39 -0.02 3.82 16 43 H 0.10 3.93 8.14 -2.39 -0.02 3.91 16 44 H 0.01 0.60 7.16 -2.38 -0.02 0.58 16 45 H 0.00 0.24 7.53 -2.39 -0.02 0.22 16 46 H 0.27 15.96 8.31 -92.71 -0.77 15.19 16 Total: -1.00 -86.36 391.13 4.06 -82.30 By element: Atomic # 1 Polarization: 19.26 SS G_CDS: -0.44 Total: 18.82 kcal Atomic # 6 Polarization: -12.30 SS G_CDS: 5.54 Total: -6.76 kcal Atomic # 7 Polarization: -88.60 SS G_CDS: -2.70 Total: -91.30 kcal Atomic # 8 Polarization: -52.96 SS G_CDS: -0.23 Total: -53.19 kcal Atomic # 14 Polarization: 48.26 SS G_CDS: 1.88 Total: 50.14 kcal Total: -86.36 4.06 -82.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293262141.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.238 kcal (2) G-P(sol) polarization free energy of solvation -86.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds