Wall clock time and date at job start Wed Apr 1 2020 03:07:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.47364 * 0.02562 * 3 2 1 5 5 H 1.48508 * 109.46883 * 120.00272 * 3 2 1 6 6 H 1.48497 * 109.46870 * 240.00082 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.07998 * 120.00063 * 179.72354 * 7 2 1 9 9 C 1.50706 * 120.00434 * 359.72891 * 7 2 1 10 10 N 1.46500 * 109.47299 * 180.02562 * 9 7 2 11 11 C 1.34966 * 125.97782 * 124.71059 * 10 9 7 12 12 C 1.35238 * 107.85507 * 179.89559 * 11 10 9 13 13 C 1.40405 * 107.87064 * 0.36692 * 12 11 10 14 14 N 1.40196 * 125.97001 * 179.74102 * 13 12 11 15 15 C 1.34768 * 120.00423 * 0.02562 * 14 13 12 16 16 O 1.21591 * 120.00079 * 0.02562 * 15 14 13 17 17 N 1.34780 * 120.00283 * 180.02562 * 15 14 13 18 18 C 1.46501 * 119.99982 * 180.02562 * 17 15 14 19 19 C 1.52998 * 109.46819 * 179.97438 * 18 17 15 20 20 C 1.50703 * 109.47165 * 180.02562 * 19 18 17 21 21 C 1.38235 * 120.00047 * 269.72986 * 20 19 18 22 22 C 1.38234 * 119.99873 * 179.76592 * 21 20 19 23 23 C 1.38238 * 120.00121 * 0.50573 * 22 21 20 24 24 C 1.50694 * 119.99807 * 179.73007 * 23 22 21 25 25 O 1.42906 * 109.46825 * 270.01554 * 24 23 22 26 26 C 1.38233 * 119.99870 * 359.74402 * 23 22 21 27 27 C 1.38237 * 119.99746 * 89.99886 * 20 19 18 28 28 N 1.31207 * 108.05174 * 359.77109 * 13 12 11 29 29 H 0.97000 * 120.00236 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46434 * 299.99667 * 9 7 2 31 31 H 1.08993 * 109.47348 * 59.99490 * 9 7 2 32 32 H 1.07999 * 126.06995 * 0.02562 * 11 10 9 33 33 H 1.08004 * 126.06640 * 180.13892 * 12 11 10 34 34 H 0.97000 * 119.99746 * 180.02562 * 14 13 12 35 35 H 0.96994 * 120.00039 * 0.02562 * 17 15 14 36 36 H 1.08997 * 109.47335 * 299.99969 * 18 17 15 37 37 H 1.09001 * 109.46861 * 60.00214 * 18 17 15 38 38 H 1.09000 * 109.47148 * 299.99675 * 19 18 17 39 39 H 1.09001 * 109.47403 * 60.00103 * 19 18 17 40 40 H 1.08000 * 119.99989 * 359.97438 * 21 20 19 41 41 H 1.08001 * 119.99694 * 180.22986 * 22 21 20 42 42 H 1.08993 * 109.47758 * 30.01729 * 24 23 22 43 43 H 1.09000 * 109.47231 * 150.02566 * 24 23 22 44 44 H 0.96698 * 113.99831 * 180.02562 * 25 24 23 45 45 H 1.07998 * 120.00121 * 179.97438 * 26 23 22 46 46 H 1.07997 * 120.00305 * 0.02562 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2841 2.7465 0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1028 1.6964 -1.2125 7 6 2.0045 -1.1940 -0.0057 8 1 3.0845 -1.1940 -0.0103 9 6 1.2510 -2.4992 -0.0059 10 7 2.2030 -3.6127 -0.0119 11 6 2.2489 -4.6215 0.8836 12 6 3.2635 -5.4432 0.5308 13 6 3.8673 -4.9126 -0.6204 14 7 4.9616 -5.4614 -1.3036 15 6 5.5284 -6.6018 -0.8627 16 8 5.0903 -7.1552 0.1274 17 7 6.5808 -7.1291 -1.5193 18 6 7.1965 -8.3691 -1.0403 19 6 8.3609 -8.7477 -1.9576 20 6 8.9939 -10.0237 -1.4654 21 6 10.0352 -9.9732 -0.5575 22 6 10.6126 -11.1438 -0.1023 23 6 10.1557 -12.3645 -0.5629 24 6 10.7893 -13.6403 -0.0712 25 8 11.8768 -13.9932 -0.9285 26 6 9.1179 -12.4148 -1.4746 27 6 8.5370 -11.2443 -1.9259 28 7 3.2287 -3.8133 -0.9445 29 1 -0.4850 -0.8400 0.0004 30 1 0.6281 -2.5591 0.8866 31 1 0.6207 -2.5548 -0.8933 32 1 1.5908 -4.7508 1.7301 33 1 3.5593 -6.3454 1.0457 34 1 5.3109 -5.0201 -2.0937 35 1 6.9305 -6.6875 -2.3089 36 1 7.5657 -8.2230 -0.0253 37 1 6.4553 -9.1684 -1.0458 38 1 7.9913 -8.8940 -2.9725 39 1 9.1022 -7.9485 -1.9526 40 1 10.3953 -9.0194 -0.2014 41 1 11.4236 -11.1045 0.6098 42 1 11.1591 -13.4948 0.9437 43 1 10.0482 -14.4397 -0.0768 44 1 12.3321 -14.8067 -0.6716 45 1 8.7612 -13.3684 -1.8347 46 1 7.7267 -11.2836 -2.6388 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000305805359.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:07:08 Heat of formation + Delta-G solvation = 23.045911 kcal Electronic energy + Delta-G solvation = -27391.972174 eV Core-core repulsion = 23283.321786 eV Total energy + Delta-G solvation = -4108.650388 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.77770 -40.06971 -39.53282 -37.32041 -35.81427 -34.71417 -33.70604 -33.12895 -31.34492 -30.88695 -29.59652 -29.29861 -26.46499 -25.80447 -23.54157 -23.16639 -22.89329 -21.66000 -21.10973 -20.52498 -19.85320 -18.05417 -17.96792 -17.16384 -16.83615 -16.64593 -16.41268 -15.85108 -15.68657 -15.35156 -14.74790 -14.56461 -14.45200 -14.15844 -13.99484 -13.89588 -13.77093 -13.60301 -13.25124 -13.09098 -12.59756 -12.42164 -12.25853 -12.07998 -11.89433 -11.79030 -11.39239 -11.34602 -11.14433 -10.80458 -10.61177 -10.43930 -10.15588 -10.12952 -9.72488 -9.33832 -9.26356 -9.08083 -8.96714 -8.56925 -8.16179 -7.45596 -6.56773 -4.30732 0.80156 1.02180 2.34315 2.60870 3.06810 3.21274 3.38462 3.40120 3.52263 3.59995 3.79720 3.95800 4.21687 4.31301 4.41949 4.46122 4.55718 4.57169 4.63887 4.66667 4.88390 4.89218 5.07370 5.15771 5.16951 5.24063 5.43234 5.52083 5.56673 5.68228 5.68542 5.73828 5.97124 6.15964 6.16075 6.19955 6.24537 6.44831 6.48726 6.57120 6.66855 6.78807 6.98173 7.06471 7.43991 7.64737 7.86736 7.91465 8.36164 8.56162 8.57832 8.65194 9.37521 10.80698 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.032034 B = 0.001408 C = 0.001383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.873881 B =19884.716837 C =20238.398206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.023 3.977 3 Si 1.077 2.923 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.285 1.285 7 C -0.608 4.608 8 H 0.063 0.937 9 C 0.250 3.750 10 N -0.319 5.319 11 C 0.050 3.950 12 C -0.284 4.284 13 C 0.277 3.723 14 N -0.644 5.644 15 C 0.713 3.287 16 O -0.567 6.567 17 N -0.746 5.746 18 C 0.146 3.854 19 C -0.094 4.094 20 C -0.073 4.073 21 C -0.115 4.115 22 C -0.097 4.097 23 C -0.098 4.098 24 C 0.116 3.884 25 O -0.568 6.568 26 C -0.097 4.097 27 C -0.115 4.115 28 N -0.305 5.305 29 H 0.267 0.733 30 H 0.046 0.954 31 H 0.034 0.966 32 H 0.167 0.833 33 H 0.162 0.838 34 H 0.407 0.593 35 H 0.397 0.603 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.081 0.919 39 H 0.082 0.918 40 H 0.126 0.874 41 H 0.123 0.877 42 H 0.055 0.945 43 H 0.055 0.945 44 H 0.380 0.620 45 H 0.123 0.877 46 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.692 -26.596 -2.825 34.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.182 4.182 3 Si 0.904 3.096 4 H -0.205 1.205 5 H -0.213 1.213 6 H -0.212 1.212 7 C -0.646 4.646 8 H 0.081 0.919 9 C 0.132 3.868 10 N -0.101 5.101 11 C -0.099 4.099 12 C -0.315 4.315 13 C 0.023 3.977 14 N -0.294 5.294 15 C 0.412 3.588 16 O -0.442 6.442 17 N -0.403 5.403 18 C 0.022 3.978 19 C -0.131 4.131 20 C -0.073 4.073 21 C -0.133 4.133 22 C -0.115 4.115 23 C -0.098 4.098 24 C 0.039 3.961 25 O -0.374 6.374 26 C -0.115 4.115 27 C -0.133 4.133 28 N -0.136 5.136 29 H 0.077 0.923 30 H 0.064 0.936 31 H 0.052 0.948 32 H 0.185 0.815 33 H 0.180 0.820 34 H 0.242 0.758 35 H 0.231 0.769 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.100 0.900 39 H 0.100 0.900 40 H 0.144 0.856 41 H 0.141 0.859 42 H 0.073 0.927 43 H 0.073 0.927 44 H 0.227 0.773 45 H 0.141 0.859 46 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 20.730 -23.865 -3.019 31.755 hybrid contribution 0.725 -2.420 0.100 2.528 sum 21.455 -26.284 -2.920 34.055 Atomic orbital electron populations 1.70850 1.06777 1.30425 1.46016 1.25916 0.96312 1.02784 0.93154 0.83419 0.74800 0.74579 0.76818 1.20530 1.21255 1.21165 1.22113 0.95391 0.90476 1.56619 0.91854 1.19743 0.86320 0.82842 0.97939 1.48753 1.23455 1.19580 1.18300 1.22552 1.00488 0.90192 0.96712 1.21528 1.02069 1.06341 1.01588 1.18787 0.90716 0.93924 0.94258 1.41380 1.31578 1.25074 1.31341 1.15607 0.80051 0.80149 0.82973 1.90873 1.64502 1.62224 1.26621 1.45015 1.34128 1.28205 1.32910 1.21152 0.93845 0.85115 0.97671 1.20810 0.97380 0.95244 0.99693 1.19681 0.96163 0.94396 0.97100 1.21079 0.96399 0.98485 0.97324 1.21033 0.99099 0.91776 0.99619 1.19617 0.97101 0.94204 0.98880 1.20989 0.88628 0.93862 0.92625 1.86572 1.47953 1.47452 1.55462 1.21030 0.95904 0.98485 0.96130 1.21073 1.00057 0.91765 1.00411 1.77338 1.03767 1.16282 1.16239 0.92279 0.93644 0.94818 0.81548 0.82045 0.75828 0.76891 0.91179 0.91206 0.89995 0.89969 0.85613 0.85920 0.92677 0.92689 0.77269 0.85933 0.85636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.46 13.65 55.43 0.76 -25.71 16 2 C 0.02 0.64 5.46 -17.82 -0.10 0.55 16 3 Si 1.08 25.01 29.90 -169.99 -5.08 19.92 16 4 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 6 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.61 -17.23 9.24 -34.44 -0.32 -17.55 16 8 H 0.06 1.87 7.81 -52.49 -0.41 1.46 16 9 C 0.25 6.39 5.57 -5.19 -0.03 6.36 16 10 N -0.32 -7.57 3.67 -62.56 -0.23 -7.80 16 11 C 0.05 1.03 11.44 -17.24 -0.20 0.83 16 12 C -0.28 -5.78 9.61 -39.83 -0.38 -6.17 16 13 C 0.28 5.69 8.11 -154.36 -1.25 4.43 16 14 N -0.64 -10.07 5.45 -15.51 -0.08 -10.15 16 15 C 0.71 10.50 8.53 -86.92 -0.74 9.76 16 16 O -0.57 -10.38 13.47 5.29 0.07 -10.30 16 17 N -0.75 -7.19 5.56 -65.23 -0.36 -7.56 16 18 C 0.15 1.26 5.66 -4.04 -0.02 1.24 16 19 C -0.09 -0.56 5.46 -27.88 -0.15 -0.71 16 20 C -0.07 -0.53 5.13 -104.62 -0.54 -1.07 16 21 C -0.11 -0.85 9.70 -39.58 -0.38 -1.23 16 22 C -0.10 -0.73 9.70 -39.58 -0.38 -1.11 16 23 C -0.10 -0.75 5.51 -104.63 -0.58 -1.33 16 24 C 0.12 0.65 7.17 36.00 0.26 0.91 16 25 O -0.57 -3.65 13.64 -35.23 -0.48 -4.13 16 26 C -0.10 -0.73 9.70 -39.58 -0.38 -1.11 16 27 C -0.12 -0.84 9.70 -39.58 -0.38 -1.22 16 28 N -0.31 -7.16 12.42 31.44 0.39 -6.77 16 29 H 0.27 7.64 7.22 -40.82 -0.29 7.34 16 30 H 0.05 1.12 7.94 -51.93 -0.41 0.71 16 31 H 0.03 0.90 8.00 -51.93 -0.42 0.48 16 32 H 0.17 2.78 8.06 -52.49 -0.42 2.35 16 33 H 0.16 3.23 5.91 -52.48 -0.31 2.92 16 34 H 0.41 5.08 8.84 -40.82 -0.36 4.72 16 35 H 0.40 2.58 8.49 -40.82 -0.35 2.23 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 38 H 0.08 0.40 8.08 -51.93 -0.42 -0.02 16 39 H 0.08 0.41 8.08 -51.93 -0.42 -0.01 16 40 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 41 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 42 H 0.06 0.23 8.09 -51.93 -0.42 -0.19 16 43 H 0.05 0.23 8.09 -51.93 -0.42 -0.19 16 44 H 0.38 0.58 9.12 45.56 0.42 0.99 16 45 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 46 H 0.13 0.73 8.06 -52.49 -0.42 0.30 16 LS Contribution 397.02 15.07 5.98 5.98 Total: -1.00 -37.21 397.02 -10.19 -47.40 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: -5.57 Total: 6.53 kcal Atomic # 6 Polarization: -1.83 SS G_CDS: -5.58 Total: -7.42 kcal Atomic # 7 Polarization: -58.46 SS G_CDS: 0.47 Total: -57.99 kcal Atomic # 8 Polarization: -14.02 SS G_CDS: -0.41 Total: -14.43 kcal Atomic # 14 Polarization: 25.01 SS G_CDS: -5.08 Total: 19.92 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -37.21 -10.19 -47.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000305805359.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.448 kcal (2) G-P(sol) polarization free energy of solvation -37.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.402 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds