Wall clock time and date at job start Wed Apr 1 2020 03:07:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.47364 * 0.02562 * 3 2 1 5 5 H 1.48508 * 109.46883 * 120.00272 * 3 2 1 6 6 H 1.48497 * 109.46870 * 240.00082 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.07998 * 120.00063 * 179.72354 * 7 2 1 9 9 C 1.50706 * 120.00434 * 359.72891 * 7 2 1 10 10 N 1.46500 * 109.47299 * 180.02562 * 9 7 2 11 11 C 1.34966 * 125.97782 * 124.71059 * 10 9 7 12 12 C 1.35238 * 107.85507 * 179.89559 * 11 10 9 13 13 C 1.40405 * 107.87064 * 0.36692 * 12 11 10 14 14 N 1.40196 * 125.97001 * 179.74102 * 13 12 11 15 15 C 1.34768 * 120.00423 * 0.02562 * 14 13 12 16 16 O 1.21591 * 120.00079 * 0.02562 * 15 14 13 17 17 N 1.34780 * 120.00283 * 180.02562 * 15 14 13 18 18 C 1.46501 * 119.99982 * 180.02562 * 17 15 14 19 19 C 1.52998 * 109.46819 * 179.97438 * 18 17 15 20 20 C 1.50703 * 109.47165 * 180.02562 * 19 18 17 21 21 C 1.38235 * 120.00047 * 269.72986 * 20 19 18 22 22 C 1.38234 * 119.99873 * 179.76592 * 21 20 19 23 23 C 1.38238 * 120.00121 * 0.50573 * 22 21 20 24 24 C 1.50694 * 119.99807 * 179.73007 * 23 22 21 25 25 O 1.42906 * 109.46825 * 270.01554 * 24 23 22 26 26 C 1.38233 * 119.99870 * 359.74402 * 23 22 21 27 27 C 1.38237 * 119.99746 * 89.99886 * 20 19 18 28 28 N 1.31207 * 108.05174 * 359.77109 * 13 12 11 29 29 H 0.97000 * 120.00236 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46434 * 299.99667 * 9 7 2 31 31 H 1.08993 * 109.47348 * 59.99490 * 9 7 2 32 32 H 1.07999 * 126.06995 * 0.02562 * 11 10 9 33 33 H 1.08004 * 126.06640 * 180.13892 * 12 11 10 34 34 H 0.97000 * 119.99746 * 180.02562 * 14 13 12 35 35 H 0.96994 * 120.00039 * 0.02562 * 17 15 14 36 36 H 1.08997 * 109.47335 * 299.99969 * 18 17 15 37 37 H 1.09001 * 109.46861 * 60.00214 * 18 17 15 38 38 H 1.09000 * 109.47148 * 299.99675 * 19 18 17 39 39 H 1.09001 * 109.47403 * 60.00103 * 19 18 17 40 40 H 1.08000 * 119.99989 * 359.97438 * 21 20 19 41 41 H 1.08001 * 119.99694 * 180.22986 * 22 21 20 42 42 H 1.08993 * 109.47758 * 30.01729 * 24 23 22 43 43 H 1.09000 * 109.47231 * 150.02566 * 24 23 22 44 44 H 0.96698 * 113.99831 * 180.02562 * 25 24 23 45 45 H 1.07998 * 120.00121 * 179.97438 * 26 23 22 46 46 H 1.07997 * 120.00305 * 0.02562 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2841 2.7465 0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1028 1.6964 -1.2125 7 6 2.0045 -1.1940 -0.0057 8 1 3.0845 -1.1940 -0.0103 9 6 1.2510 -2.4992 -0.0059 10 7 2.2030 -3.6127 -0.0119 11 6 2.2489 -4.6215 0.8836 12 6 3.2635 -5.4432 0.5308 13 6 3.8673 -4.9126 -0.6204 14 7 4.9616 -5.4614 -1.3036 15 6 5.5284 -6.6018 -0.8627 16 8 5.0903 -7.1552 0.1274 17 7 6.5808 -7.1291 -1.5193 18 6 7.1965 -8.3691 -1.0403 19 6 8.3609 -8.7477 -1.9576 20 6 8.9939 -10.0237 -1.4654 21 6 10.0352 -9.9732 -0.5575 22 6 10.6126 -11.1438 -0.1023 23 6 10.1557 -12.3645 -0.5629 24 6 10.7893 -13.6403 -0.0712 25 8 11.8768 -13.9932 -0.9285 26 6 9.1179 -12.4148 -1.4746 27 6 8.5370 -11.2443 -1.9259 28 7 3.2287 -3.8133 -0.9445 29 1 -0.4850 -0.8400 0.0004 30 1 0.6281 -2.5591 0.8866 31 1 0.6207 -2.5548 -0.8933 32 1 1.5908 -4.7508 1.7301 33 1 3.5593 -6.3454 1.0457 34 1 5.3109 -5.0201 -2.0937 35 1 6.9305 -6.6875 -2.3089 36 1 7.5657 -8.2230 -0.0253 37 1 6.4553 -9.1684 -1.0458 38 1 7.9913 -8.8940 -2.9725 39 1 9.1022 -7.9485 -1.9526 40 1 10.3953 -9.0194 -0.2014 41 1 11.4236 -11.1045 0.6098 42 1 11.1591 -13.4948 0.9437 43 1 10.0482 -14.4397 -0.0768 44 1 12.3321 -14.8067 -0.6716 45 1 8.7612 -13.3684 -1.8347 46 1 7.7267 -11.2836 -2.6388 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000305805359.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:07:07 Heat of formation + Delta-G solvation = -3.427761 kcal Electronic energy + Delta-G solvation = -27393.120158 eV Core-core repulsion = 23283.321786 eV Total energy + Delta-G solvation = -4109.798373 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.29500 -40.99271 -40.43343 -37.79768 -36.75606 -36.18419 -35.51786 -33.91728 -32.56885 -31.85385 -31.01794 -30.25513 -28.15848 -26.63782 -25.12295 -23.98153 -23.67979 -22.88349 -22.12945 -21.69422 -21.19703 -19.30358 -19.15567 -18.37307 -18.28627 -17.29938 -17.11832 -16.99281 -16.62064 -16.27240 -15.97200 -15.75290 -15.60811 -15.54657 -15.17483 -14.91658 -14.58618 -14.49243 -14.23971 -14.08486 -13.89714 -13.78397 -13.68802 -13.22436 -13.11065 -12.62420 -12.61423 -12.48436 -12.01511 -11.94591 -11.88441 -11.83289 -11.67997 -11.18462 -10.99848 -10.99300 -10.68485 -10.24393 -9.83506 -9.79725 -9.61248 -9.14077 -8.75946 -6.54906 0.26890 0.49135 0.99328 1.09039 1.51936 1.58433 1.64591 1.79946 2.03568 2.36418 2.49678 2.70987 3.02213 3.12295 3.58719 3.84619 3.86004 3.95019 4.03750 4.11215 4.11548 4.15428 4.19988 4.39650 4.51029 4.57106 4.58886 4.59903 4.71555 4.73523 4.78701 4.86844 4.94024 4.97767 5.09994 5.13735 5.17838 5.40742 5.47551 5.56010 5.64904 5.67427 5.81006 5.86214 5.96240 6.07268 6.28218 6.42779 6.69973 6.88187 7.08996 7.21125 7.40438 8.59373 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.032034 B = 0.001408 C = 0.001383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.873881 B =19884.716837 C =20238.398206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.018 4.018 3 Si 1.120 2.880 4 H -0.275 1.275 5 H -0.272 1.272 6 H -0.275 1.275 7 C -0.622 4.622 8 H 0.045 0.955 9 C 0.260 3.740 10 N -0.345 5.345 11 C 0.055 3.945 12 C -0.291 4.291 13 C 0.287 3.713 14 N -0.636 5.636 15 C 0.711 3.289 16 O -0.603 6.603 17 N -0.720 5.720 18 C 0.148 3.852 19 C -0.080 4.080 20 C -0.083 4.083 21 C -0.125 4.125 22 C -0.112 4.112 23 C -0.114 4.114 24 C 0.115 3.885 25 O -0.591 6.591 26 C -0.112 4.112 27 C -0.124 4.124 28 N -0.347 5.347 29 H 0.261 0.739 30 H 0.054 0.946 31 H 0.017 0.983 32 H 0.201 0.799 33 H 0.168 0.832 34 H 0.422 0.578 35 H 0.416 0.584 36 H 0.059 0.941 37 H 0.060 0.940 38 H 0.097 0.903 39 H 0.097 0.903 40 H 0.137 0.863 41 H 0.133 0.867 42 H 0.067 0.933 43 H 0.067 0.933 44 H 0.399 0.601 45 H 0.133 0.867 46 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.330 -27.158 -3.085 35.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.218 4.218 3 Si 0.941 3.059 4 H -0.200 1.200 5 H -0.197 1.197 6 H -0.200 1.200 7 C -0.660 4.660 8 H 0.064 0.936 9 C 0.140 3.860 10 N -0.126 5.126 11 C -0.093 4.093 12 C -0.322 4.322 13 C 0.031 3.969 14 N -0.288 5.288 15 C 0.410 3.590 16 O -0.481 6.481 17 N -0.377 5.377 18 C 0.025 3.975 19 C -0.118 4.118 20 C -0.083 4.083 21 C -0.143 4.143 22 C -0.130 4.130 23 C -0.114 4.114 24 C 0.038 3.962 25 O -0.400 6.400 26 C -0.130 4.130 27 C -0.142 4.142 28 N -0.178 5.178 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.034 0.966 32 H 0.218 0.782 33 H 0.185 0.815 34 H 0.259 0.741 35 H 0.254 0.746 36 H 0.077 0.923 37 H 0.078 0.922 38 H 0.116 0.884 39 H 0.115 0.885 40 H 0.155 0.845 41 H 0.151 0.849 42 H 0.085 0.915 43 H 0.085 0.915 44 H 0.249 0.751 45 H 0.151 0.849 46 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 22.427 -24.481 -3.320 33.366 hybrid contribution 0.312 -2.442 0.178 2.468 sum 22.739 -26.923 -3.142 35.381 Atomic orbital electron populations 1.70946 1.07468 1.30169 1.47369 1.27272 0.96419 1.06045 0.92039 0.82877 0.74133 0.71102 0.77795 1.20000 1.19685 1.20024 1.22302 0.94718 0.92153 1.56862 0.93620 1.19414 0.86419 0.82800 0.97331 1.48545 1.24136 1.20198 1.19757 1.23160 1.00604 0.88821 0.96677 1.21708 1.02179 1.06528 1.01775 1.19095 0.90914 0.92823 0.94070 1.41380 1.30444 1.25389 1.31574 1.15803 0.80727 0.79652 0.82831 1.90842 1.65814 1.63074 1.28386 1.44859 1.32163 1.28032 1.32686 1.21210 0.94379 0.84017 0.97935 1.20725 0.96416 0.95083 0.99573 1.19837 0.96351 0.94866 0.97290 1.21323 0.96549 0.99046 0.97350 1.21281 0.99613 0.92000 1.00080 1.19980 0.97325 0.95202 0.98922 1.21047 0.88814 0.93429 0.92890 1.86509 1.48396 1.48948 1.56152 1.21284 0.96130 0.99184 0.96359 1.21324 1.00369 0.91863 1.00660 1.77255 1.04931 1.18139 1.17455 0.92985 0.92866 0.96564 0.78216 0.81464 0.74054 0.74630 0.92305 0.92192 0.88415 0.88495 0.84486 0.84925 0.91490 0.91460 0.75064 0.84876 0.84408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.16 13.65 21.45 0.29 -53.87 16 2 C -0.02 -1.02 5.46 84.65 0.46 -0.55 16 3 Si 1.12 49.74 29.90 68.60 2.05 51.79 16 4 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 5 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 6 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 7 C -0.62 -35.64 9.24 25.60 0.24 -35.40 16 8 H 0.05 2.73 7.81 -2.91 -0.02 2.71 16 9 C 0.26 13.49 5.57 85.64 0.48 13.97 16 10 N -0.34 -16.41 3.67 -351.84 -1.29 -17.71 16 11 C 0.06 2.23 11.44 83.52 0.96 3.18 16 12 C -0.29 -11.64 9.61 22.11 0.21 -11.43 16 13 C 0.29 11.61 8.11 133.31 1.08 12.69 16 14 N -0.64 -19.10 5.45 -321.24 -1.75 -20.85 16 15 C 0.71 19.90 8.53 179.06 1.53 21.43 16 16 O -0.60 -21.56 13.47 -4.00 -0.05 -21.61 16 17 N -0.72 -12.32 5.56 -478.54 -2.66 -14.98 16 18 C 0.15 2.30 5.66 86.38 0.49 2.79 16 19 C -0.08 -0.76 5.46 29.85 0.16 -0.60 16 20 C -0.08 -1.08 5.13 -19.86 -0.10 -1.18 16 21 C -0.12 -1.70 9.70 22.27 0.22 -1.48 16 22 C -0.11 -1.59 9.70 22.27 0.22 -1.38 16 23 C -0.11 -1.66 5.51 -19.87 -0.11 -1.77 16 24 C 0.12 1.17 7.17 71.23 0.51 1.68 16 25 O -0.59 -6.97 13.64 -148.98 -2.03 -9.00 16 26 C -0.11 -1.57 9.70 22.27 0.22 -1.36 16 27 C -0.12 -1.66 9.70 22.27 0.22 -1.45 16 28 N -0.35 -16.34 12.42 -54.43 -0.68 -17.02 16 29 H 0.26 15.13 7.22 -92.71 -0.67 14.46 16 30 H 0.05 2.65 7.94 -2.39 -0.02 2.63 16 31 H 0.02 0.90 8.00 -2.39 -0.02 0.88 16 32 H 0.20 6.34 8.06 -2.91 -0.02 6.32 16 33 H 0.17 6.56 5.91 -2.91 -0.02 6.54 16 34 H 0.42 9.85 8.84 -92.71 -0.82 9.03 16 35 H 0.42 4.14 8.49 -92.71 -0.79 3.36 16 36 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.10 0.66 8.08 -2.39 -0.02 0.64 16 39 H 0.10 0.67 8.08 -2.39 -0.02 0.66 16 40 H 0.14 1.43 8.06 -2.91 -0.02 1.41 16 41 H 0.13 1.48 8.06 -2.91 -0.02 1.46 16 42 H 0.07 0.49 8.09 -2.39 -0.02 0.47 16 43 H 0.07 0.48 8.09 -2.39 -0.02 0.46 16 44 H 0.40 0.75 9.12 -74.06 -0.68 0.08 16 45 H 0.13 1.45 8.06 -2.91 -0.02 1.43 16 46 H 0.14 1.38 8.06 -2.91 -0.02 1.36 16 Total: -1.00 -80.38 397.02 -0.50 -80.88 By element: Atomic # 1 Polarization: 24.38 SS G_CDS: -1.14 Total: 23.23 kcal Atomic # 6 Polarization: -7.63 SS G_CDS: 6.77 Total: -0.87 kcal Atomic # 7 Polarization: -118.34 SS G_CDS: -6.09 Total: -124.43 kcal Atomic # 8 Polarization: -28.52 SS G_CDS: -2.09 Total: -30.61 kcal Atomic # 14 Polarization: 49.74 SS G_CDS: 2.05 Total: 51.79 kcal Total: -80.38 -0.50 -80.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000305805359.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.450 kcal (2) G-P(sol) polarization free energy of solvation -80.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds