Wall clock time and date at job start Wed Apr 1 2020 02:06:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42898 * 113.99785 * 2 1 4 4 C 1.50707 * 109.54376 * 300.00196 * 3 2 1 5 5 N 1.29944 * 126.28565 * 239.84843 * 4 3 2 6 6 O 1.21298 * 110.25133 * 179.68408 * 5 4 3 7 7 C 1.33646 * 109.80865 * 0.46556 * 6 5 4 8 8 C 1.50703 * 126.55032 * 179.79810 * 7 6 5 9 9 C 1.50695 * 109.47182 * 269.69222 * 8 7 6 10 10 C 1.37641 * 120.12837 * 265.26133 * 9 8 7 11 11 C 1.38621 * 120.24936 * 180.27864 * 10 9 8 12 12 C 1.38661 * 120.49798 * 359.75825 * 11 10 9 13 13 C 1.37602 * 120.24774 * 359.96061 * 12 11 10 14 14 C 1.40698 * 120.12827 * 85.00023 * 9 8 7 15 15 C 1.41390 * 120.24178 * 359.97438 * 14 9 8 16 16 H 1.07998 * 120.00490 * 26.50551 * 15 14 9 17 17 C 1.39952 * 120.00094 * 206.51251 * 15 14 9 18 18 N 1.30828 * 119.99507 * 25.27182 * 17 15 14 19 19 Si 1.86799 * 120.00246 * 205.28165 * 17 15 14 20 20 H 1.48497 * 109.47254 * 179.97438 * 19 17 15 21 21 H 1.48507 * 109.46661 * 299.99520 * 19 17 15 22 22 H 1.48497 * 109.47132 * 59.99159 * 19 17 15 23 23 N 1.31128 * 106.89803 * 359.54159 * 7 6 5 24 24 C 1.53178 * 109.61609 * 60.22179 * 3 2 1 25 25 C 1.53093 * 109.15937 * 62.93183 * 24 3 2 26 26 O 1.42897 * 109.41705 * 57.60687 * 25 24 3 27 27 C 1.42897 * 114.10020 * 298.84156 * 26 25 24 28 28 C 1.53094 * 109.41736 * 61.15616 * 27 26 25 29 29 H 1.08996 * 109.46776 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47014 * 299.99431 * 1 2 3 31 31 H 1.08994 * 109.47175 * 60.00159 * 1 2 3 32 32 H 1.09006 * 109.46535 * 149.69408 * 8 7 6 33 33 H 1.09002 * 109.47108 * 29.69595 * 8 7 6 34 34 H 1.07999 * 119.87762 * 0.02562 * 10 9 8 35 35 H 1.07995 * 119.74851 * 179.74034 * 11 10 9 36 36 H 1.07997 * 119.87168 * 179.97438 * 12 11 10 37 37 H 1.07994 * 120.12393 * 179.97438 * 13 12 11 38 38 H 0.96997 * 120.00253 * 5.86706 * 18 17 15 39 39 H 1.09003 * 109.52007 * 182.83418 * 24 3 2 40 40 H 1.08992 * 109.52829 * 303.02420 * 24 3 2 41 41 H 1.09000 * 109.48412 * 297.62063 * 25 24 3 42 42 H 1.09005 * 109.48627 * 177.59609 * 25 24 3 43 43 H 1.09002 * 109.47810 * 301.17489 * 27 26 25 44 44 H 1.09002 * 109.49260 * 181.14671 * 27 26 25 45 45 H 1.08999 * 109.52505 * 182.48997 * 28 27 26 46 46 H 1.09000 * 109.57044 * 62.33059 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 1.5665 2.0549 -1.2299 5 7 2.3387 2.5354 -2.1580 6 8 1.6756 3.0783 -3.0165 7 6 0.3787 3.0018 -2.7030 8 6 -0.7722 3.5550 -3.5034 9 6 -1.0622 4.9650 -3.0576 10 6 -2.0300 5.2044 -2.1087 11 6 -2.3029 6.5009 -1.7010 12 6 -1.6025 7.5698 -2.2391 13 6 -0.6267 7.3536 -3.1848 14 6 -0.3409 6.0415 -3.6058 15 6 0.6598 5.8072 -4.5769 16 1 0.6056 4.9325 -5.2080 17 6 1.7207 6.7086 -4.7201 18 7 2.0841 7.4567 -3.7102 19 14 2.6175 6.8439 -6.3531 20 1 3.6921 7.8630 -6.2448 21 1 3.2146 5.5292 -6.7002 22 1 1.6584 7.2472 -7.4126 23 7 0.2986 2.3486 -1.5688 24 6 1.5647 2.0667 1.2524 25 6 2.0873 1.3402 2.4944 26 8 3.5106 1.2363 2.4204 27 6 3.9837 0.4940 1.2948 28 6 3.5374 1.1865 0.0044 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -1.6551 2.9354 -3.3461 33 1 -0.5120 3.5548 -4.5619 34 1 -2.5818 4.3793 -1.6830 35 1 -3.0669 6.6797 -0.9590 36 1 -1.8236 8.5758 -1.9144 37 1 -0.0827 8.1876 -3.6029 38 1 1.6766 7.3276 -2.8395 39 1 1.9679 3.0791 1.2259 40 1 0.4761 2.1080 1.2856 41 1 1.6520 0.3420 2.5418 42 1 1.8097 1.9005 3.3872 43 1 3.5732 -0.5153 1.3264 44 1 5.0723 0.4447 1.3230 45 1 3.8594 0.5982 -0.8549 46 1 3.9804 2.1810 -0.0484 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000351016189.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:06:58 Heat of formation + Delta-G solvation = -8.820685 kcal Electronic energy + Delta-G solvation = -31202.586618 eV Core-core repulsion = 27060.261640 eV Total energy + Delta-G solvation = -4142.324979 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -45.10468 -40.21686 -38.13510 -37.42596 -35.19626 -34.01808 -33.79024 -32.39249 -31.39896 -30.48493 -29.40002 -27.06382 -26.78550 -25.72898 -25.06459 -23.85826 -22.87811 -21.87287 -21.09341 -20.35051 -19.62972 -17.93928 -17.64035 -17.32744 -16.65513 -16.16295 -15.89917 -15.53458 -15.29793 -15.14251 -14.65367 -14.58209 -14.34094 -14.14144 -13.86246 -13.28189 -13.02887 -12.87085 -12.48798 -12.46538 -12.36735 -12.17764 -12.02111 -11.76590 -11.46338 -11.42926 -11.33009 -11.25585 -10.99389 -10.89229 -10.70750 -10.62917 -10.52202 -10.44700 -9.98031 -9.84335 -9.61645 -9.57784 -9.28630 -9.05943 -7.76936 -7.71205 -7.28373 -4.58520 1.62856 2.41772 2.64629 2.71311 3.12982 3.22222 3.31438 3.44237 3.63708 3.66089 3.84393 3.96213 4.15146 4.47900 4.55219 4.73419 4.84579 5.06916 5.15297 5.25393 5.30816 5.31629 5.43143 5.50836 5.53619 5.60240 5.66116 5.71244 5.76383 5.81441 5.83342 5.96443 6.03241 6.04505 6.08306 6.21130 6.23883 6.39932 6.52029 6.83779 6.95292 7.00870 7.03941 7.25607 7.50929 7.65231 7.68143 7.79041 8.03594 8.15537 8.57590 8.62044 8.75057 9.95010 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.012173 B = 0.003755 C = 0.003348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2299.709669 B = 7454.391162 C = 8360.149256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.369 6.369 3 C 0.220 3.780 4 C 0.132 3.868 5 N -0.379 5.379 6 O 0.096 5.904 7 C 0.223 3.777 8 C 0.038 3.962 9 C -0.224 4.224 10 C -0.054 4.054 11 C -0.258 4.258 12 C -0.079 4.079 13 C -0.215 4.215 14 C 0.111 3.889 15 C -0.514 4.514 16 H 0.081 0.919 17 C 0.043 3.957 18 N -0.788 5.788 19 Si 1.059 2.941 20 H -0.274 1.274 21 H -0.273 1.273 22 H -0.273 1.273 23 N -0.496 5.496 24 C -0.176 4.176 25 C 0.069 3.931 26 O -0.382 6.382 27 C 0.067 3.933 28 C -0.136 4.136 29 H 0.082 0.918 30 H 0.045 0.955 31 H 0.073 0.927 32 H 0.094 0.906 33 H 0.100 0.900 34 H 0.092 0.908 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.106 0.894 38 H 0.298 0.702 39 H 0.084 0.916 40 H 0.090 0.910 41 H 0.057 0.943 42 H 0.097 0.903 43 H 0.061 0.939 44 H 0.098 0.902 45 H 0.087 0.913 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.657 -11.398 5.690 12.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.286 6.286 3 C 0.178 3.822 4 C -0.142 4.142 5 N -0.087 5.087 6 O 0.036 5.964 7 C 0.004 3.996 8 C -0.001 4.001 9 C -0.226 4.226 10 C -0.073 4.073 11 C -0.277 4.277 12 C -0.098 4.098 13 C -0.235 4.235 14 C 0.107 3.893 15 C -0.541 4.541 16 H 0.099 0.901 17 C -0.180 4.180 18 N -0.411 5.411 19 Si 0.883 3.117 20 H -0.198 1.198 21 H -0.198 1.198 22 H -0.199 1.199 23 N -0.231 5.231 24 C -0.214 4.214 25 C -0.007 4.007 26 O -0.301 6.301 27 C -0.010 4.010 28 C -0.174 4.174 29 H 0.100 0.900 30 H 0.064 0.936 31 H 0.091 0.909 32 H 0.112 0.888 33 H 0.119 0.881 34 H 0.110 0.890 35 H 0.108 0.892 36 H 0.108 0.892 37 H 0.124 0.876 38 H 0.112 0.888 39 H 0.103 0.897 40 H 0.108 0.892 41 H 0.076 0.924 42 H 0.115 0.885 43 H 0.079 0.921 44 H 0.116 0.884 45 H 0.105 0.895 46 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 1.473 -10.912 5.459 12.289 hybrid contribution -1.856 -0.398 0.493 1.961 sum -0.383 -11.309 5.952 12.786 Atomic orbital electron populations 1.23093 0.80101 1.02303 1.02610 1.87936 1.21033 1.25095 1.94523 1.19485 0.93901 0.81939 0.86858 1.26186 0.86267 1.02015 0.99743 1.74547 1.20401 1.12850 1.00926 1.85380 1.17832 1.55048 1.38129 1.29268 0.87022 0.91258 0.92004 1.18872 0.88970 0.94538 0.97673 1.19014 1.06479 0.91355 1.05760 1.20436 0.96058 0.95627 0.95147 1.20309 1.06526 0.92996 1.07867 1.20681 0.95752 0.96870 0.96463 1.21162 1.02243 0.96616 1.03437 1.17462 0.91252 0.90504 0.90037 1.20576 1.07011 1.09998 1.16518 0.90139 1.26977 0.95823 0.91116 1.04064 1.70459 1.35346 1.32594 1.02669 0.83710 0.76661 0.77856 0.73508 1.19835 1.19827 1.19859 1.71792 1.20937 1.18065 1.12269 1.22750 1.03293 1.00879 0.94504 1.22498 0.81291 0.99900 0.97061 1.87917 1.21193 1.75052 1.45935 1.22549 0.99699 0.94522 0.84237 1.22161 0.91250 1.03882 1.00147 0.89972 0.93632 0.90883 0.88754 0.88143 0.88951 0.89198 0.89175 0.87603 0.88806 0.89700 0.89201 0.92425 0.88458 0.92108 0.88391 0.89451 0.88968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.19 10.18 101.05 1.03 1.22 16 2 O -0.37 -5.29 9.31 -35.23 -0.33 -5.61 16 3 C 0.22 3.31 0.69 -91.59 -0.06 3.25 16 4 C 0.13 2.40 6.37 -156.37 -1.00 1.41 16 5 N -0.38 -7.62 11.47 30.90 0.35 -7.27 16 6 O 0.10 2.01 11.31 18.09 0.20 2.22 16 7 C 0.22 4.34 7.75 -13.06 -0.10 4.24 16 8 C 0.04 0.70 5.49 -29.04 -0.16 0.54 16 9 C -0.22 -4.81 5.17 -103.91 -0.54 -5.35 16 10 C -0.05 -1.12 9.66 -39.66 -0.38 -1.51 16 11 C -0.26 -5.42 10.05 -39.28 -0.39 -5.81 16 12 C -0.08 -1.74 10.02 -39.66 -0.40 -2.14 16 13 C -0.22 -5.19 7.96 -38.87 -0.31 -5.50 16 14 C 0.11 2.66 5.27 -106.83 -0.56 2.09 16 15 C -0.51 -12.33 8.38 -37.74 -0.32 -12.65 16 16 H 0.08 1.83 6.44 -52.49 -0.34 1.50 16 17 C 0.04 1.04 4.93 -17.34 -0.09 0.96 16 18 N -0.79 -20.27 12.36 55.55 0.69 -19.59 16 19 Si 1.06 20.77 30.00 -169.99 -5.10 15.67 16 20 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 21 H -0.27 -5.13 7.11 56.52 0.40 -4.73 16 22 H -0.27 -5.11 7.11 56.52 0.40 -4.71 16 23 N -0.50 -9.21 9.08 -9.87 -0.09 -9.30 16 24 C -0.18 -2.42 4.63 -26.59 -0.12 -2.54 16 25 C 0.07 0.80 6.69 37.21 0.25 1.05 16 26 O -0.38 -4.97 10.76 -35.23 -0.38 -5.35 16 27 C 0.07 0.77 6.69 37.21 0.25 1.02 16 28 C -0.14 -1.87 4.65 -26.59 -0.12 -2.00 16 29 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.05 0.53 6.37 -51.93 -0.33 0.20 16 31 H 0.07 1.07 5.52 -51.93 -0.29 0.78 16 32 H 0.09 1.45 8.06 -51.93 -0.42 1.04 16 33 H 0.10 1.75 6.49 -51.93 -0.34 1.41 16 34 H 0.09 1.69 8.06 -52.49 -0.42 1.27 16 35 H 0.09 1.69 8.06 -52.49 -0.42 1.26 16 36 H 0.09 1.78 8.06 -52.49 -0.42 1.35 16 37 H 0.11 2.65 6.60 -52.49 -0.35 2.30 16 38 H 0.30 7.97 6.74 -40.82 -0.28 7.70 16 39 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 40 H 0.09 1.22 6.41 -51.93 -0.33 0.88 16 41 H 0.06 0.62 7.82 -51.93 -0.41 0.22 16 42 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 43 H 0.06 0.67 7.82 -51.93 -0.41 0.26 16 44 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 45 H 0.09 1.19 8.14 -51.93 -0.42 0.76 16 46 H 0.09 1.36 8.13 -51.93 -0.42 0.94 16 LS Contribution 371.51 15.07 5.60 5.60 Total: -1.00 -27.46 371.51 -8.16 -35.62 By element: Atomic # 1 Polarization: 15.82 SS G_CDS: -6.08 Total: 9.74 kcal Atomic # 6 Polarization: -18.69 SS G_CDS: -3.03 Total: -21.72 kcal Atomic # 7 Polarization: -37.11 SS G_CDS: 0.95 Total: -36.16 kcal Atomic # 8 Polarization: -8.24 SS G_CDS: -0.50 Total: -8.74 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.10 Total: 15.67 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -27.46 -8.16 -35.62 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351016189.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.801 kcal (2) G-P(sol) polarization free energy of solvation -27.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds