Wall clock time and date at job start Wed Apr 1 2020 02:06:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42898 * 113.99785 * 2 1 4 4 C 1.50707 * 109.54376 * 300.00196 * 3 2 1 5 5 N 1.29944 * 126.28565 * 239.84843 * 4 3 2 6 6 O 1.21298 * 110.25133 * 179.68408 * 5 4 3 7 7 C 1.33646 * 109.80865 * 0.46556 * 6 5 4 8 8 C 1.50703 * 126.55032 * 179.79810 * 7 6 5 9 9 C 1.50695 * 109.47182 * 269.69222 * 8 7 6 10 10 C 1.37641 * 120.12837 * 265.26133 * 9 8 7 11 11 C 1.38621 * 120.24936 * 180.27864 * 10 9 8 12 12 C 1.38661 * 120.49798 * 359.75825 * 11 10 9 13 13 C 1.37602 * 120.24774 * 359.96061 * 12 11 10 14 14 C 1.40698 * 120.12827 * 85.00023 * 9 8 7 15 15 C 1.41390 * 120.24178 * 359.97438 * 14 9 8 16 16 H 1.07998 * 120.00490 * 26.50551 * 15 14 9 17 17 C 1.39952 * 120.00094 * 206.51251 * 15 14 9 18 18 N 1.30828 * 119.99507 * 25.27182 * 17 15 14 19 19 Si 1.86799 * 120.00246 * 205.28165 * 17 15 14 20 20 H 1.48497 * 109.47254 * 179.97438 * 19 17 15 21 21 H 1.48507 * 109.46661 * 299.99520 * 19 17 15 22 22 H 1.48497 * 109.47132 * 59.99159 * 19 17 15 23 23 N 1.31128 * 106.89803 * 359.54159 * 7 6 5 24 24 C 1.53178 * 109.61609 * 60.22179 * 3 2 1 25 25 C 1.53093 * 109.15937 * 62.93183 * 24 3 2 26 26 O 1.42897 * 109.41705 * 57.60687 * 25 24 3 27 27 C 1.42897 * 114.10020 * 298.84156 * 26 25 24 28 28 C 1.53094 * 109.41736 * 61.15616 * 27 26 25 29 29 H 1.08996 * 109.46776 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47014 * 299.99431 * 1 2 3 31 31 H 1.08994 * 109.47175 * 60.00159 * 1 2 3 32 32 H 1.09006 * 109.46535 * 149.69408 * 8 7 6 33 33 H 1.09002 * 109.47108 * 29.69595 * 8 7 6 34 34 H 1.07999 * 119.87762 * 0.02562 * 10 9 8 35 35 H 1.07995 * 119.74851 * 179.74034 * 11 10 9 36 36 H 1.07997 * 119.87168 * 179.97438 * 12 11 10 37 37 H 1.07994 * 120.12393 * 179.97438 * 13 12 11 38 38 H 0.96997 * 120.00253 * 5.86706 * 18 17 15 39 39 H 1.09003 * 109.52007 * 182.83418 * 24 3 2 40 40 H 1.08992 * 109.52829 * 303.02420 * 24 3 2 41 41 H 1.09000 * 109.48412 * 297.62063 * 25 24 3 42 42 H 1.09005 * 109.48627 * 177.59609 * 25 24 3 43 43 H 1.09002 * 109.47810 * 301.17489 * 27 26 25 44 44 H 1.09002 * 109.49260 * 181.14671 * 27 26 25 45 45 H 1.08999 * 109.52505 * 182.48997 * 28 27 26 46 46 H 1.09000 * 109.57044 * 62.33059 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 1.5665 2.0549 -1.2299 5 7 2.3387 2.5354 -2.1580 6 8 1.6756 3.0783 -3.0165 7 6 0.3787 3.0018 -2.7030 8 6 -0.7722 3.5550 -3.5034 9 6 -1.0622 4.9650 -3.0576 10 6 -2.0300 5.2044 -2.1087 11 6 -2.3029 6.5009 -1.7010 12 6 -1.6025 7.5698 -2.2391 13 6 -0.6267 7.3536 -3.1848 14 6 -0.3409 6.0415 -3.6058 15 6 0.6598 5.8072 -4.5769 16 1 0.6056 4.9325 -5.2080 17 6 1.7207 6.7086 -4.7201 18 7 2.0841 7.4567 -3.7102 19 14 2.6175 6.8439 -6.3531 20 1 3.6921 7.8630 -6.2448 21 1 3.2146 5.5292 -6.7002 22 1 1.6584 7.2472 -7.4126 23 7 0.2986 2.3486 -1.5688 24 6 1.5647 2.0667 1.2524 25 6 2.0873 1.3402 2.4944 26 8 3.5106 1.2363 2.4204 27 6 3.9837 0.4940 1.2948 28 6 3.5374 1.1865 0.0044 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -1.6551 2.9354 -3.3461 33 1 -0.5120 3.5548 -4.5619 34 1 -2.5818 4.3793 -1.6830 35 1 -3.0669 6.6797 -0.9590 36 1 -1.8236 8.5758 -1.9144 37 1 -0.0827 8.1876 -3.6029 38 1 1.6766 7.3276 -2.8395 39 1 1.9679 3.0791 1.2259 40 1 0.4761 2.1080 1.2856 41 1 1.6520 0.3420 2.5418 42 1 1.8097 1.9005 3.3872 43 1 3.5732 -0.5153 1.3264 44 1 5.0723 0.4447 1.3230 45 1 3.8594 0.5982 -0.8549 46 1 3.9804 2.1810 -0.0484 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000351016189.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:06:57 Heat of formation + Delta-G solvation = -24.356606 kcal Electronic energy + Delta-G solvation = -31203.260307 eV Core-core repulsion = 27060.261640 eV Total energy + Delta-G solvation = -4142.998667 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -46.61023 -41.29423 -39.85728 -38.47340 -36.64798 -35.77275 -35.24220 -33.67137 -32.42311 -31.99585 -31.16543 -28.53961 -27.94666 -26.91258 -26.82380 -25.00988 -24.18790 -23.22946 -22.83384 -21.88173 -20.91072 -19.67810 -19.12896 -18.73044 -17.72787 -17.30507 -17.02449 -16.89729 -16.62048 -16.34651 -16.29972 -16.01600 -15.71606 -15.49386 -15.45024 -14.47346 -14.19287 -14.10887 -13.99897 -13.87819 -13.80029 -13.62804 -13.48826 -13.02807 -12.92893 -12.82449 -12.73103 -12.62397 -12.45866 -12.30068 -12.08420 -11.99945 -11.95898 -11.63321 -11.55949 -11.28225 -10.89735 -10.88952 -10.79895 -10.65377 -9.52856 -9.49278 -9.12763 -6.43182 0.09928 0.78060 0.95299 1.12153 1.51383 1.64662 1.76806 1.94993 2.33758 2.37680 2.53997 2.70977 2.84110 2.88550 3.42927 3.48454 3.61476 3.80599 3.96350 4.12134 4.17146 4.22592 4.24870 4.32608 4.35843 4.44407 4.46690 4.51341 4.55202 4.60282 4.62906 4.67537 4.70176 4.78680 4.83906 4.87838 4.92306 4.99431 5.03705 5.09003 5.26560 5.47562 5.72373 5.83187 5.85822 5.91246 6.02615 6.11995 6.24683 6.39014 6.78085 6.97339 7.10199 8.06025 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.012173 B = 0.003755 C = 0.003348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2299.709669 B = 7454.391162 C = 8360.149256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.369 6.369 3 C 0.216 3.784 4 C 0.135 3.865 5 N -0.400 5.400 6 O 0.068 5.932 7 C 0.216 3.784 8 C 0.041 3.959 9 C -0.221 4.221 10 C -0.060 4.060 11 C -0.253 4.253 12 C -0.088 4.088 13 C -0.241 4.241 14 C 0.086 3.914 15 C -0.535 4.535 16 H 0.086 0.914 17 C 0.008 3.992 18 N -0.820 5.820 19 Si 1.104 2.896 20 H -0.279 1.279 21 H -0.259 1.259 22 H -0.257 1.257 23 N -0.490 5.490 24 C -0.172 4.172 25 C 0.072 3.928 26 O -0.395 6.395 27 C 0.071 3.929 28 C -0.136 4.136 29 H 0.109 0.891 30 H 0.057 0.943 31 H 0.053 0.947 32 H 0.128 0.872 33 H 0.105 0.895 34 H 0.124 0.876 35 H 0.119 0.881 36 H 0.109 0.891 37 H 0.084 0.916 38 H 0.279 0.721 39 H 0.063 0.937 40 H 0.092 0.908 41 H 0.072 0.928 42 H 0.117 0.883 43 H 0.072 0.928 44 H 0.119 0.881 45 H 0.085 0.915 46 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.919 -13.503 6.779 15.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.286 6.286 3 C 0.175 3.825 4 C -0.139 4.139 5 N -0.112 5.112 6 O 0.013 5.987 7 C -0.002 4.002 8 C 0.002 3.998 9 C -0.223 4.223 10 C -0.078 4.078 11 C -0.272 4.272 12 C -0.106 4.106 13 C -0.260 4.260 14 C 0.083 3.917 15 C -0.563 4.563 16 H 0.104 0.896 17 C -0.209 4.209 18 N -0.443 5.443 19 Si 0.922 3.078 20 H -0.204 1.204 21 H -0.183 1.183 22 H -0.182 1.182 23 N -0.225 5.225 24 C -0.210 4.210 25 C -0.004 4.004 26 O -0.314 6.314 27 C -0.005 4.005 28 C -0.174 4.174 29 H 0.127 0.873 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.146 0.854 33 H 0.124 0.876 34 H 0.142 0.858 35 H 0.137 0.863 36 H 0.127 0.873 37 H 0.102 0.898 38 H 0.091 0.909 39 H 0.082 0.918 40 H 0.111 0.889 41 H 0.090 0.910 42 H 0.135 0.865 43 H 0.090 0.910 44 H 0.137 0.863 45 H 0.103 0.897 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 0.178 -13.016 6.529 14.563 hybrid contribution -1.641 0.191 0.277 1.675 sum -1.463 -12.825 6.806 14.593 Atomic orbital electron populations 1.23231 0.79115 1.03976 1.02141 1.87942 1.22074 1.24228 1.94393 1.19707 0.94697 0.82248 0.85890 1.26926 0.85983 1.00921 1.00032 1.74547 1.20999 1.14023 1.01610 1.85350 1.18571 1.55859 1.38913 1.29523 0.86862 0.91419 0.92437 1.18978 0.89829 0.93194 0.97758 1.19369 1.05565 0.92351 1.05054 1.20826 0.95800 0.96601 0.94599 1.20731 1.06211 0.92782 1.07478 1.20960 0.95234 0.98502 0.95937 1.21151 1.03456 0.96376 1.05066 1.17792 0.91993 0.91269 0.90615 1.20712 1.07448 1.10659 1.17448 0.89598 1.28202 0.96332 0.90423 1.05920 1.70579 1.36676 1.34690 1.02381 0.83177 0.75866 0.78257 0.70543 1.20436 1.18341 1.18184 1.71843 1.21041 1.17798 1.11770 1.22733 1.03390 0.99895 0.95030 1.22612 0.80701 1.00639 0.96470 1.87909 1.21942 1.75357 1.46206 1.22639 1.00999 0.94348 0.82547 1.22166 0.90459 1.03202 1.01587 0.87301 0.92462 0.92879 0.85362 0.87650 0.85846 0.86295 0.87322 0.89815 0.90868 0.91787 0.88941 0.90981 0.86512 0.91017 0.86338 0.89655 0.90715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.25 10.18 113.37 1.15 1.40 16 2 O -0.37 -9.80 9.31 -148.98 -1.39 -11.19 16 3 C 0.22 6.30 0.69 -11.42 -0.01 6.29 16 4 C 0.14 4.92 6.37 138.47 0.88 5.80 16 5 N -0.40 -16.38 11.47 -60.33 -0.69 -17.07 16 6 O 0.07 2.92 11.31 74.81 0.85 3.77 16 7 C 0.22 8.33 7.75 88.38 0.68 9.02 16 8 C 0.04 1.43 5.49 29.10 0.16 1.59 16 9 C -0.22 -9.32 5.17 -19.41 -0.10 -9.42 16 10 C -0.06 -2.34 9.66 22.22 0.21 -2.13 16 11 C -0.25 -10.07 10.05 22.46 0.23 -9.85 16 12 C -0.09 -3.85 10.02 22.22 0.22 -3.62 16 13 C -0.24 -11.97 7.96 22.73 0.18 -11.79 16 14 C 0.09 4.22 5.27 -21.29 -0.11 4.10 16 15 C -0.53 -26.37 8.38 23.46 0.20 -26.18 16 16 H 0.09 3.99 6.44 -2.91 -0.02 3.97 16 17 C 0.01 0.39 4.93 85.26 0.42 0.81 16 18 N -0.82 -44.33 12.36 21.83 0.27 -44.06 16 19 Si 1.10 42.73 30.00 68.60 2.06 44.79 16 20 H -0.28 -10.96 7.11 99.48 0.71 -10.26 16 21 H -0.26 -9.35 7.11 99.48 0.71 -8.64 16 22 H -0.26 -9.22 7.11 99.48 0.71 -8.51 16 23 N -0.49 -17.75 9.08 -303.20 -2.75 -20.50 16 24 C -0.17 -4.51 4.63 30.68 0.14 -4.36 16 25 C 0.07 1.50 6.69 72.01 0.48 1.98 16 26 O -0.40 -9.45 10.76 -148.98 -1.60 -11.05 16 27 C 0.07 1.51 6.69 72.01 0.48 1.99 16 28 C -0.14 -3.65 4.65 30.68 0.14 -3.51 16 29 H 0.11 1.87 8.14 -2.39 -0.02 1.86 16 30 H 0.06 1.16 6.37 -2.39 -0.02 1.14 16 31 H 0.05 1.44 5.52 -2.39 -0.01 1.43 16 32 H 0.13 3.58 8.06 -2.38 -0.02 3.56 16 33 H 0.11 3.59 6.49 -2.39 -0.02 3.57 16 34 H 0.12 4.03 8.06 -2.91 -0.02 4.01 16 35 H 0.12 4.03 8.06 -2.91 -0.02 4.00 16 36 H 0.11 4.22 8.06 -2.91 -0.02 4.20 16 37 H 0.08 4.44 6.60 -2.91 -0.02 4.43 16 38 H 0.28 15.89 6.74 -92.71 -0.63 15.26 16 39 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 40 H 0.09 2.34 6.41 -2.39 -0.02 2.32 16 41 H 0.07 1.31 7.82 -2.39 -0.02 1.29 16 42 H 0.12 1.96 8.14 -2.38 -0.02 1.94 16 43 H 0.07 1.38 7.82 -2.39 -0.02 1.36 16 44 H 0.12 2.00 8.14 -2.39 -0.02 1.98 16 45 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 46 H 0.07 2.25 8.13 -2.39 -0.02 2.23 16 Total: -1.00 -61.12 371.51 3.26 -57.86 By element: Atomic # 1 Polarization: 34.18 SS G_CDS: 1.15 Total: 35.33 kcal Atomic # 6 Polarization: -43.25 SS G_CDS: 5.37 Total: -37.87 kcal Atomic # 7 Polarization: -78.46 SS G_CDS: -3.18 Total: -81.63 kcal Atomic # 8 Polarization: -16.33 SS G_CDS: -2.14 Total: -18.48 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.06 Total: 44.79 kcal Total: -61.12 3.26 -57.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351016189.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.504 kcal (2) G-P(sol) polarization free energy of solvation -61.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds